How to use _write_reports method in autotest

Best Python code snippet using autotest_python

app_svc.py

Source:app_svc.py

...106    async def teardown(self):107        await self._destroy_plugins()108        await self._save_configurations()109        await self._services.get('data_svc').save_state()110        await self._write_reports()111        self.log.debug('[!] shutting down server...good-bye')112    async def register_contacts(self):113        contact_svc = self.get_service('contact_svc')114        await contact_svc.register(Http(self.get_services()))115        await contact_svc.register(Udp(self.get_services()))116        await contact_svc.register(Tcp(self.get_services()))117        await contact_svc.register(WebSocket(self.get_services()))118        await contact_svc.register(Html(self.get_services()))119    """ PRIVATE """120    async def _save_configurations(self):121        for cfg in ['default', 'agents']:122            with open('conf/%s.yml' % cfg, 'w') as config:123                config.write(yaml.dump(self.get_config(name=cfg)))124    async def _destroy_plugins(self):125        for plugin in await self._services.get('data_svc').locate('plugins', dict(enabled=True)):126            await plugin.destroy(self.get_services())127    async def _write_reports(self):128        file_svc = self.get_service('file_svc')129        r_dir = await file_svc.create_exfil_sub_directory('%s/reports' % self.get_config('reports_dir'))130        report = json.dumps(dict(self.get_service('contact_svc').report)).encode()131        await file_svc.save_file('contact_reports', report, r_dir)132        for op in await self.get_service('data_svc').locate('operations'):133            report = json.dumps(op.report(self.get_service('file_svc')))...

mlst_reporter.py

Source:mlst_reporter.py

...59            self.any_allele_unsure = True60            allele_str += '*'61        details_list = [str(results[x]) for x in ['cov', 'pc', 'ctgs', 'depth', 'hetmin', 'hets']]62        return allele_str, '\t'.join(details_list)63    def _write_reports(self):64        f_out_all = pyfastaq.utils.open_file_write(self.outprefix + '.details.tsv')65        print('gene\tallele\tcov\tpc\tctgs\tdepth\thetmin\thets', file=f_out_all)66        out_simple = [str(self.sequence_type)]67        for gene in self.mlst_profile.genes_list:68            allele_str, detail_str = self._report_strings(self.gene_results[gene])69            out_simple.append(allele_str)70            print(gene, allele_str, detail_str, sep='\t', file=f_out_all)71        pyfastaq.utils.close(f_out_all)72        if self.sequence_type != 'ND' and self.any_allele_unsure:73            out_simple[0] += '*'74        f_out_simple = pyfastaq.utils.open_file_write(self.outprefix + '.tsv')75        print('ST', *self.mlst_profile.genes_list, sep='\t', file=f_out_simple)76        print(*out_simple, sep='\t', file=f_out_simple)77        pyfastaq.utils.close(f_out_simple)78    def run(self):79        self.summary_sample.run()80        self._call_genes()81        self._call_sequence_type()...

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