How to use get_field_dict method in autotest

Best Python code snippet using autotest_python

test_behaviors.py

Source:test_behaviors.py

...55                seo_title = 'name'56        class SharedModel2(SEO):57            class SEO:58                seo_title = 'asdf'59        get_field_dict(SharedModel1)['name']60        get_field_dict(SharedModel2)['asdf']61class TestMultiInheritMRO(unittest.TestCase):62    def test_improper_mro_multi_inheritance(self):63        class UpperBase(models.Model):64            pass65        with self.assertRaises(ImproperlyConfigured):66            class MultiInherited(UpperBase, Behavior):67                pass68    def test_proper_mro_multi_inheritance(self):69        class UpperBase(models.Model):70            pass71        class MultiInherited(Behavior, UpperBase):72            pass73def get_field_dict(model):74    """75    Make a dictionary of field name -> field class76    """77    return dict((field.name, field) for field in model._meta.fields)78class TestTimestampable(unittest.TestCase):79    def test_bare(self):80        class TestModel(Timestampable):81            pass82        x = TestModel()83        fields = get_field_dict(x)84        self.assertTrue(isinstance(fields['created_at'], models.DateTimeField))85        self.assertTrue(isinstance(fields['updated_at'], models.DateTimeField))86    #@unittest.expectedFailure87    #def test_same_name(self):88    #    # This is actually a problem with django, it won't let you have two89    #    # model classes with the same name in the same app90    #    class TestModel(Timestampable):91    #        class Timestampable:92    #            created_at = 'asdf'93    #94    #    x = TestModel()95    #96    #    fields = get_field_dict(x)97    #98    #    self.assertTrue(isinstance(fields['asdf'], models.DateTimeField))99    #    self.assertTrue(isinstance(fields['updated_at'], models.DateTimeField))100    def test_custom(self):101        # This tests fails if the models share a name. see test_same_name102        class Test2Model(Timestampable):103            class Timestampable:104                created_at = 'asdf'105        x = Test2Model()106        fields = get_field_dict(x)107        self.assertTrue(isinstance(fields['asdf'], models.DateTimeField))108        self.assertTrue(isinstance(fields['updated_at'], models.DateTimeField))109    def test_proxy(self):110        class TestProxyParentModel(Timestampable):111            pass112        class TestProxyProxyModel(TestProxyParentModel):113            class Meta:114                proxy = True115        field_names = [i.attname for i in TestProxyProxyModel._meta.fields]116        # without careful treatment, proxy models117        # could have fields added twice. verify that118        # there are no duplicate field names.119        self.assertTrue(len(set(field_names)) == len(field_names))120class TestValidation(unittest.TestCase):121    def test_bare(self):122        class ValidationTestModel(Validation):123            foo = models.CharField(max_length=1)124            def validate(self):125                raise ValidationError('Generic Error')126            def validate_foo(self):127                raise ValidationError('Foo Error')128        x = ValidationTestModel()129        self.assertFalse(x.is_valid())130        self.assertIsInstance(x.validation_errors(), dict)131        expected_errors = {132            NON_FIELD_ERRORS: [u'Generic Error'],133            'foo': [u'This field cannot be blank.', u'Foo Error']134        }135        self.assertEqual(x.validation_errors(), expected_errors)136        try:137            x.save()138            self.assertTrue(False)139        except ValidationError:140            pass141class TestMergedQuerySet(unittest.TestCase):142    def test_bare(self):143        from django.db.models.query import QuerySet144        class QuerySetTestModel_A(models.Model):145            class QuerySet(QuerySet):146                def foo(self):147                    pass148        class QuerySetTestModel_B(models.Model):149            class QuerySet(QuerySet):150                def bar(self):151                    pass152        class QuerySetTestModel_C(ManagedQuerySet, QuerySetTestModel_A, QuerySetTestModel_B):153            class QuerySet(QuerySet):154                def baz(self):155                    pass156        x = QuerySetTestModel_C()157        self.assertTrue(hasattr(x.QuerySet, 'foo'))158        self.assertTrue(hasattr(x.QuerySet, 'bar'))159        self.assertTrue(hasattr(x.QuerySet, 'baz'))160class TestSEO(unittest.TestCase):161    def test_bare(self):162        class Test3Model(SEO):163            pass164        x = Test3Model()165        fields = get_field_dict(x)166        self.assertTrue(isinstance(fields['seo_title'], models.CharField))167        self.assertTrue(isinstance(fields['seo_description'], models.TextField))168        self.assertTrue(isinstance(fields['seo_keywords'], models.TextField))169    def test_overridden_field(self):170        class Test14Model(SEO):171            seo_title = models.IntegerField()172        x = Test14Model()173        fields = get_field_dict(x)174        self.assertTrue(isinstance(fields['seo_title'], models.IntegerField))175        self.assertTrue(isinstance(fields['seo_description'], models.TextField))176        self.assertTrue(isinstance(fields['seo_keywords'], models.TextField))177    def test_nonsense_config(self):178        class Test13Model(SEO):179            blahblah = 'foo'180            asdf = models.CharField(max_length=255)181        x = Test13Model()182        fields = get_field_dict(x)183        self.assertTrue(isinstance(fields['seo_title'], models.CharField))184        self.assertTrue(isinstance(fields['seo_description'], models.TextField))185        self.assertTrue(isinstance(fields['seo_keywords'], models.TextField))186    def test_override(self):187        class Test4Model(SEO):188            class SEO:189                seo_title = 'foo'190        x = Test4Model()191        fields = get_field_dict(x)192        self.assertTrue(isinstance(fields['foo'], models.CharField))193        self.assertTrue(isinstance(fields['seo_description'], models.TextField))194        self.assertTrue(isinstance(fields['seo_keywords'], models.TextField))195    def test_deep_inheritance(self):196        class ParentModel(SEO):197            class SEO:198                seo_title = 'foo'199        class Test7Model(ParentModel):200            class SEO:201                seo_keywords = 'asdfasdf'202        x = Test7Model()203        fields = get_field_dict(x)204        self.assertTrue(isinstance(fields['foo'], models.CharField))205        self.assertTrue(isinstance(fields['seo_description'], models.TextField))206        self.assertTrue(isinstance(fields['asdfasdf'], models.TextField))207    def test_deep_inheritance_abstract(self):208        class ParentModelAbstract(SEO):209            class SEO:210                seo_title = 'foo'211            class Meta:212                abstract = True213        class Test8Model(ParentModelAbstract):214            class SEO:215                seo_keywords = 'asdfasdf'216        x = Test8Model()217        fields = get_field_dict(x)218        self.assertTrue(isinstance(fields['foo'], models.CharField))219        self.assertTrue(isinstance(fields['seo_description'], models.TextField))220        self.assertTrue(isinstance(fields['asdfasdf'], models.TextField))221    def test_deep_inheritance_settings(self):222        class ParentModelNoSettings(SEO):223            class Meta:224                abstract = True225        class Test9Model(ParentModelNoSettings):226            class SEO:227                seo_keywords = 'asdfasdf'228        x = Test9Model()229        fields = get_field_dict(x)230        self.assertTrue(isinstance(fields['seo_title'], models.CharField))231        self.assertTrue(isinstance(fields['seo_description'], models.TextField))232        self.assertTrue(isinstance(fields['asdfasdf'], models.TextField))233class TestTwoBehaviors(unittest.TestCase):234    def test_bare(self):235        class Test5Model(SEO, Timestampable):236            pass237        x = Test5Model()238        fields = get_field_dict(x)239        self.assertTrue(isinstance(fields['seo_title'], models.CharField))240        self.assertTrue(isinstance(fields['seo_description'], models.TextField))241        self.assertTrue(isinstance(fields['seo_keywords'], models.TextField))242        self.assertTrue(isinstance(fields['created_at'], models.DateTimeField))243        self.assertTrue(isinstance(fields['updated_at'], models.DateTimeField))244    def test_override(self):245        class Test6Model(SEO, Timestampable):246            class SEO:247                seo_title = 'asdf'248            class Timestampable:249                updated_at = 'foo'250            pass251        x = Test6Model()252        fields = get_field_dict(x)253        self.assertTrue(isinstance(fields['asdf'], models.CharField))254        self.assertTrue(isinstance(fields['seo_description'], models.TextField))255        self.assertTrue(isinstance(fields['seo_keywords'], models.TextField))256        self.assertTrue(isinstance(fields['created_at'], models.DateTimeField))257        self.assertTrue(isinstance(fields['foo'], models.DateTimeField))258    def test_new_behavior(self):259        class SeoAndTime(SEO, Timestampable):260            class SEO:261                seo_title = 'seo_and_time_title'262            pass263        class Test10Model(SeoAndTime):264            class Timestampable:265                updated_at = 'asdf'266            class SEO:267                seo_description = 'foo'268        x = Test10Model()269        fields = get_field_dict(x)270        self.assertTrue(isinstance(fields['seo_and_time_title'], models.CharField))271        self.assertTrue(isinstance(fields['foo'], models.TextField))272        self.assertTrue(isinstance(fields['seo_keywords'], models.TextField))273        self.assertTrue(isinstance(fields['created_at'], models.DateTimeField))274        self.assertTrue(isinstance(fields['asdf'], models.DateTimeField))275    def test_namespacings(self):276        class SeoAndTime2(SEO, Timestampable):277            class SEO:278                seo_title = 'seo_and_time_title'279            pass280        class Test11Model(SeoAndTime2):281            class Timestampable:282                seo_description = 'asdf'283        x = Test11Model()284        fields = get_field_dict(x)285        self.assertTrue(isinstance(fields['seo_and_time_title'], models.CharField))286        self.assertTrue(isinstance(fields['seo_description'], models.TextField))287        self.assertTrue(isinstance(fields['seo_keywords'], models.TextField))288        self.assertTrue(isinstance(fields['created_at'], models.DateTimeField))...

make_tiledb_metadata_file.py

Source:make_tiledb_metadata_file.py

...40                outf.write('\t'+task_dict[task][field])41            except:42                print("not found:"+field+'\t'+task_dict[task]['cromwell_id']+'\t'+task)43                outf.write('\tNA')44def get_field_dict(text_field,args_field,task_dict,id_to_task):45    if args_field is None:46        for task in task_dict: 47            task_dict[task][text_field]=None48    else:49        for line in open(args_field,'r').read().strip().split('\n'):50            tokens=line.split('/')51            for token in tokens:52                if token in id_to_task:53                    cur_task=id_to_task[token]54                    if cur_task not in task_dict:55                        task_dict[cur_task]=dict()56                        task_dict[cur_task]['cromwell_id']=token 57                    task_dict[cur_task][text_field]=line58                    break59    return task_dict 60def main():61    args=parse_args()62    #create a dictionary of cromwell hash values to encode id's 63    id_to_task=pd.read_csv(args.id_to_task,header=None,sep='\t',index_col=0).to_dict()[1]64    65    #create a dictionary to keep track of task files66    task_dict=dict()67    #iterate through each of the fields68    task_dict=get_field_dict('fc_bigwig',args.fc_bigwig,task_dict,id_to_task)69    #print(task_dict)70    #print("parsed fc_bigwig") 71    task_dict=get_field_dict('pval_bigwig',args.pval_bigwig,task_dict,id_to_task)72    #print("parsed pval_bigwig")73    task_dict=get_field_dict('count_bigwig_plus_5p',args.count_bigwig_plus_5p,task_dict,id_to_task)74    #print("parsed count_bigwig_plus_5p") 75    task_dict=get_field_dict('count_bigwig_minus_5p',args.count_bigwig_minus_5p,task_dict,id_to_task)76    #print("parsed count_bigwig_minus_5p")77    task_dict=get_field_dict('count_bigwig_unstranded_5p',args.count_bigwig_unstranded_5p,task_dict,id_to_task)78    #print("parsed count_bigwig_unstranded_5p")79    task_dict=get_field_dict('idr_peak',args.idr_peak,task_dict,id_to_task)80    #print("parsed idr_peak") 81    task_dict=get_field_dict('overlap_peak',args.overlap_peak,task_dict,id_to_task)82    #print("parsed overlap_peak") 83    task_dict=get_field_dict('ambig_peak',args.ambig_peak,task_dict,id_to_task)84    #print("parsed ambig_peak")85    #print(task_dict)86    #generate output file(s)87    #pdb.set_trace() 88    if args.split_tasks_to_separate_files is True:89        for task in task_dict:90            write_output_file_per_task(args,task_dict,task)91    else:92        write_output_file_all_tasks(args,task_dict)93    94    95    96if __name__=="__main__":97    main()...

csv_parse.py

Source:csv_parse.py

...20def cmp_total_with_value_dict(table, field_dict):21    for field_name in table.field_name_list:22        if table.__getattribute__(field_name) != field_dict[field_name]:23            msg = "%s.%s does not match at field[%s]. table value[%s], db value[%s]." % (table.db_name, table.table_name, field_name, table.__getattribute__(field_name), field_dict[field_name])24            msg += "\ntable:" + table.get_field_dict().__str__()25            msg += "\ndb:" + field_dict.__str__()26            return False, msg27    return True, ""28def get_primary_key_value_dict(table):29    if len(table.primary_key_value_dict) == 0:30        for field_name in table.primary_key_name_list:31            table.primary_key_value_dict[field_name] = table.__getattribute__(field_name)32    return table.primary_key_value_dict33def get_field_dict(table):34    if len(table.field_dict) == 0:35        for field_name in table.field_name_list:36            table.field_dict[field_name] = table.__getattribute__(field_name)37    return table.field_dict38def parse_one_csv_file(file_path, db_name, table_name, tables, primary_key_name_list):39    tables[table_name] = []40    row = 041    Table = type(table_name, (object,), {})42    for line in open(file_path, "r"):43        line = common_utils.try_gbk2utf8(line)44        line = common_utils.trim_return(line)45        fields = line.split(",")46        if row == 0:47            Table.db_name = db_name...

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