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How to use path_joiner method in autotest

Best Python code snippet using autotest_python

cca_cluster.py

Source:cca_cluster.py

...226            # As the function seeks to minimizes we convert to minus area227            loss_function = -sum(true_corr[perm_good] - median_corr[perm_good])228        gp_dict['x_iters'].append([audio_reg, visual_reg])229        gp_dict['func_vals'].append(loss_function)230        save_as_pickle(gp_dict, path_joiner('gp_dict'))231        df = pd.DataFrame(gp_dict)232        df.to_csv(path_joiner('gp_dict') + '.csv', index=False)233        if loss_function <= min(gp_dict['func_vals']):234            print('Save because it is best')235            save_as_pickle(cca, path_joiner('best_cca'))236            perm_dict['significant_comp'] = perm_good237            perm_dict['min_func'] = loss_function238            perm_dict['perm_corr'] = perm_corr239            perm_dict['true_corr'] = true_corr240            save_as_pickle(perm_dict, path_joiner('perm_dict'))241        objective_count.append(1)242        return loss_function243    n_calls = 10244    n_random_starts = 5245    try:246        gp_dict = load_pickle_file(path_joiner('gp_dict'))247        perm_dict = load_pickle_file(path_joiner('perm_dict'))248        x0 = gp_dict['x_iters']249        y0 = gp_dict['func_vals']250        function_gp = gp_minimize(objective, space, x0=x0, y0=y0, n_calls=n_calls, n_jobs=1, verbose=False,251                                  n_random_starts=n_random_starts, random_state=0)252    except FileNotFoundError:253        # Description of bayesian optimization https://distill.pub/2020/bayesian-optimization/254        function_gp = gp_minimize(objective, space, n_calls=n_calls, n_jobs=1, verbose=False,255                                  n_random_starts=n_random_starts, random_state=0)256    print('Best corr: ' + str(-function_gp['fun']) + '\n')257    print('with audio reg = ' + str(function_gp['x'][0]) + ', visual reg = ' + str(function_gp['x'][1]) + '\n\n')258    audio_reg = function_gp['x'][0]259    visual_reg = function_gp['x'][1]260    if save_fig:261        all_cv['reg_audio'].append(audio_reg)262        all_cv['reg_visual'].append(visual_reg)263        all_cv['largest_area'].append(-function_gp['fun'])264        all_cv['significant_comp'].append(perm_dict['significant_comp'])265        df = pd.DataFrame(all_cv)266        df.to_csv(path_joiner('area') + '.csv', index=False)267        save_as_pickle(perm_dict, path_joiner('perm_dict'))268    # Plot the permutations269    cca_perm_plot(audio_feature, visual_feature, audio_reg, visual_reg, save_kwargs, **perm_dict)270    return271def cca_perm_plot(audio_feature, visual_feature, audio_reg, visual_reg, save_kwargs,272                  perm_corr, true_corr, significant_comp, min_func):273    """274    Plots the correlation for each component along with the corresponding permutations. Further, the significant275    components are highlighted.276    :param audio_feature:277    :param visual_feature:278    :param audio_reg:279    :param visual_reg:280    :param save_kwargs:281    :param perm_corr:...

test_jinjawalk.py

Source:test_jinjawalk.py

...3import os4from jinjawalk import JinjaWalk5from typing import Callable, Dict6import shutil7def path_joiner(base: str) -> Callable[[str], str]:8    return lambda s: os.path.join(base, s)9def dump_string(file_path: str, s: str):10    with open(file_path, "w") as of:11        print(s, file=of)12def read_file(file_path: str) -> str:13    with open(file_path, "r") as f:14        content = f.read()15    return content16class TestJinjaWalk(TestCase):17    @staticmethod18    def write_dummy_template(destination: str,19                             conf: Dict[str, str],20                             section_name: str = 'section_name',21                             namespace: str = 'config') -> str:22        s = '\n'.join(["line" + str(i+1) + " with {{ " + namespace + "['" + section_name + "']['" + k + "'] }}"23                       for i, k in enumerate(conf)])24        dump_string(destination, s)25        expected_render = '\n'.join([f"line{i+1} with {conf[k]}" for i, k in enumerate(conf)])26        return expected_render27    @staticmethod28    def write_dummy_conf_file(destination: str, conf: Dict[str, str], section_name='section_name'):29        s = f"[{section_name}]\n" + '\n'.join([f"{k} = {conf[k]}" for k in conf])30        dump_string(destination, s)31class TestMultipleInPlace(TestJinjaWalk):32    def setUp(self) -> None:33        self.work_dir = tempfile.mkdtemp()34        conf1 = {"key1": "value1"}35        conf2 = {"key2": "value2"}36        conf3 = {"key3": "value3"}37        self.conf_file_path1 = path_joiner(self.work_dir)('conf1.ini')38        self.conf_file_path2 = path_joiner(self.work_dir)('conf2.ini')39        self.conf_file_path3 = path_joiner(self.work_dir)('conf3.ini')40        self.write_dummy_conf_file(self.conf_file_path1, conf1)41        self.write_dummy_conf_file(self.conf_file_path2, conf2)42        self.write_dummy_conf_file(self.conf_file_path3, conf3)43        self.expected_render = self.write_dummy_template(path_joiner(self.work_dir)('template.txt'),44                                                         {**conf1, **conf2, **conf3})45    def tearDown(self) -> None:46        shutil.rmtree(self.work_dir)47    def test_multiple_in_place(self):48        walker = JinjaWalk()49        walker.walk([self.conf_file_path1, self.conf_file_path2, self.conf_file_path3], self.work_dir, self.work_dir)50        rendered_template = read_file(path_joiner(self.work_dir)('template.txt'))51        self.assertEqual(self.expected_render, rendered_template.strip('\n'))52class TestDefaults(TestJinjaWalk):53    conf = {"key1": "value1", "key2": "value2"}54    list_of_dummy_subdirs = ['.', 'subdir1', 'subdir2']55    list_of_dummy_templates = ['template1.txt', 'template2.txt']56    def setUp(self) -> None:57        self.source_dir = tempfile.mkdtemp()58        self.conf_file_path = path_joiner(self.source_dir)('conf.ini')59        self.write_dummy_conf_file(self.conf_file_path, self.conf)60        subdirs_to_populate = map(path_joiner(self.source_dir), self.list_of_dummy_subdirs)61        for subdir in subdirs_to_populate:62            os.makedirs(subdir, exist_ok=True)63            templates_to_create = map(path_joiner(subdir), self.list_of_dummy_templates)64            for template_path in templates_to_create:65                self.expected_render = self.write_dummy_template(template_path, self.conf)66        self.output_dir = tempfile.mkdtemp()67    def tearDown(self) -> None:68        shutil.rmtree(self.source_dir)69        shutil.rmtree(self.output_dir)70    def test_subdirs(self):71        walker = JinjaWalk()72        walker.walk(self.conf_file_path, self.source_dir, self.output_dir)73        subdirs_to_check = map(path_joiner(self.output_dir), self.list_of_dummy_subdirs)74        for subdir in subdirs_to_check:75            rendered_templates_to_check = map(path_joiner(subdir), self.list_of_dummy_templates)76            for template_path in rendered_templates_to_check:77                with self.subTest(template=template_path):78                    rendered_template = read_file(template_path)...

main.py

Source:main.py

...39def create_python_package(40    path_joiner: Callable[..., Path],41    dirs: Sequence[str],42) -> None:43    dir_path = path_joiner(*dirs)44    dir_path.mkdir(parents=True, exist_ok=True)45    convert_dir_to_python_package(dir_path)46def render_with_ctx(47    jinja_env: Environment,48    template_data: TemplateData,49    context: dict[str, Any],50) -> str:51    return jinja_env.get_template(template_data.name).render(52        **extract_keys(context, template_data.context_keys)53    )54def create_from_template(55    path_joiner: Callable[..., Path],56    name_transformer: Callable[[str], str],57    jinja_env: Environment,58    template_data: TemplateData,59    context: dict[str, Any],60) -> None:61    actual = name_transformer(template_data.name)62    target_dir = template_data.target.format(**context)63    with path_joiner(target_dir, actual).open("w", encoding="utf-8") as f:64        f.write(render_with_ctx(jinja_env, template_data, context))65        f.write("\n")66@click.command()67@click.option(68    "--target-dir",69    "-t",70    default=".",71    type=str,72    show_default=True,73    help="Desired destination of the scaffolding.",74)75@click.option(76    "--line-length",77    "-l",...

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