How to use pickle_dump method in autotest

Best Python code snippet using autotest_python

CombineBins.py

Source:CombineBins.py

...53        Y += data.y54        pos += data.pos55        print("[INFO] Data loaded: {}".format(absolute_file_path))56    return Data(x=X, y=Y, pos=pos, total=total)57def pickle_dump(obj, file):58    return pickle.dump(obj, file, protocol=pickle.HIGHEST_PROTOCOL)59def output_data(dst, data):60    print("[INFO] Output: {}".format(os.path.abspath(dst)))61    with open(dst, "wb") as f:62        pickle_dump(data.total, f)63        pickle_dump(data.x, f)64        pickle_dump(data.y, f)65        pickle_dump(data.pos, f)66def main():67    args = process_command()68    data = load_data_from(69        directory_path=args.src,70        need_shuffle_file_paths=args.shuffle_data71    )72    output_data(73        dst=os.path.join(args.dst, args.bin_name),74        data=data75    )76if __name__ == "__main__":...

Tensor2Bin.py

Source:Tensor2Bin.py

...3import pickle4from argparse import ArgumentParser5import clair.utils as utils6logging.basicConfig(format='%(message)s', level=logging.INFO)7def pickle_dump(obj, file):8    return pickle.dump(obj, file, protocol=pickle.HIGHEST_PROTOCOL)9def Run(args):10    utils.setup_environment()11    logging.info("Loading the dataset ...")12    total, XArrayCompressed, YArrayCompressed, posArrayCompressed = \13        utils.get_training_array(14            tensor_fn=args.tensor_fn,15            var_fn=args.var_fn,16            bed_fn=args.bed_fn,17            shuffle=args.shuffle,18            is_allow_duplicate_chr_pos=args.allow_duplicate_chr_pos19        )20    logging.info("Writing to binary ...")21    with open(args.bin_fn, 'wb') as fh:22        pickle_dump(total, fh)23        pickle_dump(XArrayCompressed, fh)24        pickle_dump(YArrayCompressed, fh)25        pickle_dump(posArrayCompressed, fh)26def main():27    parser = ArgumentParser(description="Generate a binary format input tensor")28    parser.add_argument('--tensor_fn', type=str, default="vartensors",29                        help="Tensor input")30    parser.add_argument('--var_fn', type=str, default="truthvars",31                        help="Truth variants list input")32    parser.add_argument('--bed_fn', type=str, default=None,33                        help="High confident genome regions input in the BED format")34    parser.add_argument('--bin_fn', type=str, default=None,35                        help="Output a binary tensor file")36    parser.add_argument('--shuffle', action='store_true',37                        help="Shuffle on building bin")38    parser.add_argument('--allow_duplicate_chr_pos', action='store_true',39                        help="Allow duplicate chromosome:position in tensor input")...

pickle_layer6.py

Source:pickle_layer6.py

1def pickle_layer6(dude_im_so_done_with_this):2  import pickle3  print("pickel encrypting")4  string_list = list(dude_im_so_done_with_this)5  pickle_dump = pickle.dumps(string_list)6  #dude_im_so_done_with_this = ("""import pickle;pickle_dump = {pickle_dump};exec(''.join(pickle.loads(pickle_dump)))""").format(pickle_dump=pickle_dump)7  dude_im_so_done_with_this = ("""import pickle;exec(''.join(pickle.loads({pickle_dump})))""").format(pickle_dump=pickle_dump)...

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