How to use node_size method in avocado

Best Python code snippet using avocado_python

micro_level_delaunay.py

Source:micro_level_delaunay.py

1import networkx as nx2import matplotlib.pyplot as plt3import numpy as np4from math import sqrt5circ_color = [0.1,1,0.1]6node_color = '#F1F1F4'7border_color = 'white'8edge_color = 'white'9node_size = 20010bg_color = [0,0,0]11pause_time = 1.212def cercle_circonscrit(T):13    (x1, y1), (x2, y2), (x3, y3) = T14    A = np.array([[x3-x1,y3-y1],[x3-x2,y3-y2]])15    Y = np.array([(x3**2 + y3**2 - x1**2 - y1**2),(x3**2+y3**2 - x2**2-y2**2)])16    if np.linalg.det(A) == 0:17        return False18    Ainv = np.linalg.inv(A)19    X = 0.5*np.dot(Ainv,Y)20    x,y = X[0],X[1]21    r = sqrt((x-x1)**2+(y-y1)**2)22    return (x,y),r23def draw_circles(T):24    print("DRAW CIRCLES ")25    # T = (v1_c,v2_c, v3_c )26    my_circ = cercle_circonscrit(T)27    Drawing_uncolored_circle = plt.Circle( my_circ[0], my_circ[1] , fill = False, color=circ_color, linestyle = "dashed",linewidth=1,zorder=0)28    ax.add_artist( Drawing_uncolored_circle )29 30g = nx.Graph()31# fig, ax = plt.subplots()32fig = plt.figure()33ax = fig.add_subplot(111)34fig.set_size_inches(18.5, 10.5)35fig.set_dpi(100)36# plt.rcParams["figure.figsize"] = [7.00, 3.50]37# plt.rcParams["figure.autolayout"] = True38# plt.rcParams['axes.facecolor'] = 'black'39# plt.rcParams['figure.facecolor'] = 'black'40ax.set_xlim([-20,120])41ax.set_ylim([-20,120])42ax.set_aspect( 1 )43# ax.set_facecolor(bg_color) 44pos=nx.get_node_attributes(g,'pos')45nx.draw(g, pos, with_labels = True)46plt.pause(pause_time) 47plt.grid()48# ---------------------         SCENE 1         -----------------------------------------------------------49plt.cla()50g.add_node(1,pos=(20,20))51g.add_node(2,pos=(15,40))52g.add_node(3,pos = (17,60))53g.add_node(4,pos = (38,53))54g.add_node(5,pos = (35,35))55g.add_node(6,pos = (36,20))56g.add_node(7,pos = (60,20))57g.add_node(8,pos = (65,40))58g.add_node(9,pos = (46,64))59circle1 = plt.Circle((0, 0), 0.2, color='r')60g.add_edge(1, 2 , color=edge_color)61g.add_edge(2, 3 , color=edge_color)62g.add_edge(3, 4 , color=edge_color)63g.add_edge(2, 4 , color=edge_color)64g.add_edge(4, 5 , color=edge_color)65g.add_edge(2, 5)66g.add_edge(1, 5)67g.add_edge(1, 6)68g.add_edge(5, 6)69g.add_edge(6, 7)70g.add_edge(5, 7)71g.add_edge(8, 7)72g.add_edge(8, 5)73g.add_edge(8, 4)74g.add_edge(9, 4)75g.add_edge(9, 3)76g.add_edge(9, 8)77pos=nx.get_node_attributes(g,'pos')78colors = nx.get_edge_attributes(g,'color').values()79nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)80fig.set_facecolor(bg_color)81plt.pause(pause_time) 82# ---------------------         SCENE 2 - new point        -----------------------------------------------------------83plt.cla()84g.add_node(10,pos = (26,43))85pos=nx.get_node_attributes(g,'pos')86colors = nx.get_edge_attributes(g,'color').values()87nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)88fig.set_facecolor(bg_color)89plt.pause(pause_time) 90# ---------------------         SCENE 3 - new edges        -----------------------------------------------------------91plt.cla()92g.add_edge(10,2)93g.add_edge(10,4)94g.add_edge(10,5)95pos=nx.get_node_attributes(g,'pos')96colors = nx.get_edge_attributes(g,'color').values()97nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)98fig.set_facecolor(bg_color)99plt.pause(pause_time) 100# ---------------------         SCENE 4  test triangle 1      -----------------------------------------------------------101plt.cla()102T = ((15,40),(38,53),(26,43))103draw_circles(T)104pos=nx.get_node_attributes(g,'pos')105colors = nx.get_edge_attributes(g,'color').values()106nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)107fig.set_facecolor(bg_color)108plt.pause(pause_time) 109# ---------------------         SCENE 5  remove edge      -----------------------------------------------------------110plt.cla()111g.remove_edge(2,4)112pos=nx.get_node_attributes(g,'pos')113colors = nx.get_edge_attributes(g,'color').values()114nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)115fig.set_facecolor(bg_color)116plt.pause(pause_time) 117# ---------------------         SCENE 6  add fli[] edge      -----------------------------------------------------------118plt.cla()119g.add_edge(3,10)120pos=nx.get_node_attributes(g,'pos')121colors = nx.get_edge_attributes(g,'color').values()122nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)123fig.set_facecolor(bg_color)124plt.pause(pause_time)  125# ---------------------         SCENE 7  add fli[] edge      -----------------------------------------------------------126plt.cla()127T = ((26,43),(17,60),(38,53))128draw_circles(T)129pos=nx.get_node_attributes(g,'pos')130colors = nx.get_edge_attributes(g,'color').values()131nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)132fig.set_facecolor(bg_color)133plt.pause(pause_time) 134# ---------------------         SCENE 8     -----------------------------------------------------------135plt.cla()136pos=nx.get_node_attributes(g,'pos')137colors = nx.get_edge_attributes(g,'color').values()138nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)139fig.set_facecolor(bg_color)140plt.pause(pause_time)  141# ---------------------         SCENE 9  add fli[] edge      -----------------------------------------------------------142plt.cla()143T = ((26,43),(17,60),(15,40))144draw_circles(T)145pos=nx.get_node_attributes(g,'pos')146colors = nx.get_edge_attributes(g,'color').values()147nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)148fig.set_facecolor(bg_color)149plt.pause(pause_time) 150# ---------------------         SCENE 10     -----------------------------------------------------------151plt.cla()152pos=nx.get_node_attributes(g,'pos')153colors = nx.get_edge_attributes(g,'color').values()154nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)155fig.set_facecolor(bg_color)156plt.pause(pause_time) 157# ---------------------         SCENE 11  add fli[] edge      -----------------------------------------------------------158plt.cla()159T = ((26,43),(38,53),(35,35))160draw_circles(T)161pos=nx.get_node_attributes(g,'pos')162colors = nx.get_edge_attributes(g,'color').values()163nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)164fig.set_facecolor(bg_color)165plt.pause(pause_time) 166# ---------------------         SCENE 12    -----------------------------------------------------------167plt.cla()168pos=nx.get_node_attributes(g,'pos')169colors = nx.get_edge_attributes(g,'color').values()170nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)171fig.set_facecolor(bg_color)172plt.pause(pause_time)  173# ---------------------         SCENE 13  add fli[] edge      -----------------------------------------------------------174plt.cla()175T = ((26,43),(15,40),(35,35))176draw_circles(T)177pos=nx.get_node_attributes(g,'pos')178colors = nx.get_edge_attributes(g,'color').values()179nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)180fig.set_facecolor(bg_color)181plt.pause(pause_time) 182# ---------------------         SCENE 14    -----------------------------------------------------------183plt.cla()184pos=nx.get_node_attributes(g,'pos')185colors = nx.get_edge_attributes(g,'color').values()186nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)187fig.set_facecolor(bg_color)188plt.pause(pause_time)  189# ---------------------         SCENE 15   -----------------------------------------------------------190plt.cla()191g.remove_edge(2,5)192pos=nx.get_node_attributes(g,'pos')193colors = nx.get_edge_attributes(g,'color').values()194nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)195fig.set_facecolor(bg_color)196plt.pause(pause_time)197# ---------------------         SCENE 16    -----------------------------------------------------------198plt.cla()199g.add_edge(10,1)200pos=nx.get_node_attributes(g,'pos')201colors = nx.get_edge_attributes(g,'color').values()202nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)203fig.set_facecolor(bg_color)204plt.pause(pause_time)  205# ---------------------         SCENE 17  add fli[] edge      -----------------------------------------------------------206plt.cla()207T = ((26,43),(15,40),(20,20))208draw_circles(T)209pos=nx.get_node_attributes(g,'pos')210colors = nx.get_edge_attributes(g,'color').values()211nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)212fig.set_facecolor(bg_color)213plt.pause(pause_time) 214# ---------------------         SCENE 18    -----------------------------------------------------------215plt.cla()216g.add_edge(10,1)217pos=nx.get_node_attributes(g,'pos')218colors = nx.get_edge_attributes(g,'color').values()219nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)220fig.set_facecolor(bg_color)221plt.pause(pause_time)  222# ---------------------         SCENE 19  add fli[] edge      -----------------------------------------------------------223plt.cla()224T = ((26,43),(35,35),(20,20))225draw_circles(T)226pos=nx.get_node_attributes(g,'pos')227colors = nx.get_edge_attributes(g,'color').values()228nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)229fig.set_facecolor(bg_color)230plt.pause(pause_time) 231# ---------------------         SCENE 18    -----------------------------------------------------------232plt.cla()233g.add_edge(10,1)234pos=nx.get_node_attributes(g,'pos')235colors = nx.get_edge_attributes(g,'color').values()236nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color, edge_color=colors)237fig.set_facecolor(bg_color)238plt.pause(pause_time)  239# # ---------------------         SCENE 2         -----------------------------------------------------------240# g.add_edge(4,3)241# T = ((1,1),(20,20),(1,20))242# draw_circles(T)243# pos=nx.get_node_attributes(g,'pos')244# nx.draw(g, pos, with_labels = True, node_color=node_color, node_size= node_size, edgecolors = border_color)245# plt.pause(pause_time) ...

network_viz_03.py

Source:network_viz_03.py

1import networkx as nx2import matplotlib.pyplot as plt3from networkx import graphviz_layout4from pySPARROW import Network, Reach5workspace = "/home/user/pysparrow-read-only/examples/testing_on_sample_sparrow_dataset/"6test_reach = '5012'7net = Network(workspace + 'test.h5')8max2= 09id2 = 010#for i in net._g:11#    if len(net.get_upstream_reaches(i)) > 1000: 12#        print str(len(net.get_upstream_reaches(i))) + " " + str(i._ComID)13    14G=net._g.subgraph(net.get_upstream_reaches(net.get_reach(test_reach)))15pos=nx.graphviz_layout(G,prog='neato',args='')16plt.figure(figsize=(8,8))17lab = {}18node_size = []19node_color = []20for r in G:21    lab[r] = r._ComID22    #print r._AreaHa23    if r._AreaHa >= 1000.0: 24        node_size.append((r.get_tot_runoff() / r._AreaHa ) ** 2.0 )25        node_color.append((r.get_tot_runoff() / r._AreaHa ) ** 2.0 )26    else:27        node_size.append(1.0)28        node_color.append(1.0)29        30plt.subplot(2,3,1)31plt.title('Total')32nx.draw(G,pos, \33    node_size=node_size, \34    alpha=0.5, \35    node_color=node_color, \36    font_size = 8,37    style='dashed',38    with_labels=False)39lab = {}40node_size = []41node_color = []42for r in G:43    lab[r] = r._ComID44    #print r._AreaHa45    if r._AreaHa >= 1000.0: 46        node_size.append((r.get_atm_runoff() / r._AreaHa ) ** 2.0 )47        node_color.append((r.get_atm_runoff() / r._AreaHa ) ** 2.0 )48    else:49        node_size.append(1.0)50        node_color.append(1.0)51        52plt.subplot(2,3,2)53plt.title('Atmosphere')54nx.draw(G,pos, \55    node_size=node_size, \56    alpha=0.5, \57    node_color=node_color, \58    font_size = 8,59    style='dashed',60    with_labels=False)    61    62lab = {}63node_size = []64node_color = []65for r in G:66    lab[r] = r._ComID67    #print r._AreaHa68    if r._AreaHa >= 1000.0: 69        node_size.append((r.get_forest_runoff() / r._AreaHa ) ** 2.0 )70        node_color.append((r.get_forest_runoff() / r._AreaHa ) ** 2.0 )71    else:72        node_size.append(1.0)73        node_color.append(1.0)74        75plt.subplot(2,3,3)76plt.title('Nonag')77nx.draw(G,pos, \78    node_size=node_size, \79    alpha=0.5, \80    node_color=node_color, \81    font_size = 8,82    style='dashed',83    with_labels=False)84    85lab = {}86node_size = []87node_color = []88for r in G:89    lab[r] = r._ComID90    #print r._AreaHa91    if r._AreaHa >= 1000.0: 92        node_size.append((r.get_fert_runoff() / r._AreaHa ) ** 2.0 )93        node_color.append((r.get_fert_runoff() / r._AreaHa ) ** 2.0 )94    else:95        node_size.append(1.0)96        node_color.append(1.0)97        98plt.subplot(2,3,4)99plt.title('Fertilizer')100nx.draw(G,pos, \101    node_size=node_size, \102    alpha=0.5, \103    node_color=node_color, \104    font_size = 8,105    style='dashed',106    with_labels=False)107lab = {}108node_size = []109node_color = []110for r in G:111    lab[r] = r._ComID112    #print r._AreaHa113    if r._AreaHa >= 1000.0: 114        node_size.append((r.get_waste_runoff() / r._AreaHa ) ** 2.0 )115        node_color.append((r.get_waste_runoff() / r._AreaHa ) ** 2.0 )116    else:117        node_size.append(1.0)118        node_color.append(1.0)119        120plt.subplot(2,3,5)121plt.title('Waste')122nx.draw(G,pos, \123    node_size=node_size, \124    alpha=0.5, \125    node_color=node_color, \126    font_size = 8,127    style='dashed',128    with_labels=False)129lab = {}130node_size = []131node_color = []132for r in G:133    lab[r] = r._ComID134    #print r._AreaHa135    if r._AreaHa >= 1000.0: 136        node_size.append((r.get_pnt_runoff() / r._AreaHa ) ** 2.0 )137        node_color.append((r.get_pnt_runoff() / r._AreaHa ) ** 2.0 )138    else:139        node_size.append(1.0)140        node_color.append(1.0)141        142plt.subplot(2,3,6)143plt.title('Point')144nx.draw(G,pos, \145    node_size=node_size, \146    alpha=0.5, \147    node_color=node_color, \148    font_size = 8,149    style='dashed',150    with_labels=False)151    152plt.axis('equal')153plt.savefig('network_viz_03.png')154plt.close()...

abstract_size.py

Source:abstract_size.py

1class AbstractSizeHandler:2    def __init__(self,builder):3        self._builder = builder4        self._standard_node_size = 305    def standard(self):6        return [self._standard_node_size for node in self._builder.v_nodes()]7    def class_type(self):8        node_sizes = []9        for node in self._builder.v_nodes():10            if self._builder.get_rdf_type(node) is None:11                node_sizes.append(self._standard_node_size/2)12            else:13                node_sizes.append(self._standard_node_size)14        return node_sizes15    def centrality(self):16        node_sizes = []17        for node in self._builder.v_nodes():18            node_size = 1 + len(self._builder.in_edges(node)) + len(self._builder.out_edges(node))19            node_size = int((node_size * self._standard_node_size) / 4)20            if node_size > 100:21                node_size = 10022            if node_size < self._standard_node_size/2:23                node_size = self._standard_node_size24            node_sizes.append(node_size)25        return node_sizes26    def in_centrality(self):27        node_sizes = []28        for node in self._builder.v_nodes():29            node_size = 1 + len(self._builder.in_edges(node))30            node_size = int((node_size * self._standard_node_size) / 2)31            if node_size > 100:32                node_size = 10033            if node_size < self._standard_node_size/2:34                node_size = self._standard_node_size35            node_sizes.append(node_size)36        return node_sizes37    def out_centrality(self):38        node_sizes = []39        for node in self._builder.v_nodes():40            node_size = 1 + len(self._builder.out_edges(node))41            node_size = int((node_size * self._standard_node_size) / 2)42            if node_size > 100:43                node_size = 10044            if node_size < self._standard_node_size/2:45                node_size = self._standard_node_size46            node_sizes.append(node_size)47        return node_sizes...

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