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How to use drop_project method in dbt-osmosis

Best Python code snippet using dbt-osmosis_python

main.py

Source:main.py

1import json2import os3import pandas as pd4import matplotlib.pyplot as plt5import numpy as np6import datetime as dt7import torch8from easydict import EasyDict9import os10def main(path="./input/"):11    # PARSER12    global_args= EasyDict()13    contributors_name = []14    contributors_num_skills = []15    contributors_skills = {}16    project_name = []17    project_duration = []18    project_score = []19    project_date = []20    project_num_roles = []21    project_roles = {}22    line = 023    skill_list = []24    skill_to_contributor = {}25    skill_level_to_contributor = {}26    num_project_per_people =  {}27    with open(path, 'r') as file_reader:28        first_args_list = file_reader.readline().split(' ')29        global_args["number_of_contributor"] = int(first_args_list[0])30        global_args["number_of_project"] = int(first_args_list[1])31        for i in range(global_args["number_of_contributor"]):32            next_args_1 = file_reader.readline().split(' ')33            contributors_name.append(next_args_1[0])34            num_project_per_people[next_args_1[0]] = 035            contributors_num_skills.append(int(next_args_1[1]))36            contributors_skills[next_args_1[0]] = {}37            for i in range(int(next_args_1[1])):38                next_args_2 = file_reader.readline().split(' ')39                level =  int(next_args_2[1])40                skill_name = next_args_2[0]41                if skill_name not in skill_list:42                    skill_list.append(skill_name)43                    skill_to_contributor[skill_name] = []44                    skill_level_to_contributor[skill_name] = {}45                for level_ in range(level+1):46                    if level_ not in skill_level_to_contributor[skill_name].keys():47                        skill_level_to_contributor[skill_name][level_] = []48                skill_level_to_contributor[skill_name][level].append(next_args_1[0]) 49                skill_to_contributor[skill_name].append(next_args_1[0])50                contributors_skills[next_args_1[0]][skill_name] = level51        52        for i in range(global_args["number_of_project"]):53            next_args_1 = file_reader.readline().split(' ')54            project_name.append(next_args_1[0])55            project_score.append(int(next_args_1[2]))56            project_date.append(int(next_args_1[3]))57            project_num_roles.append(int(next_args_1[4]))58            project_roles[next_args_1[0]] = []59            60            for i in range(int(next_args_1[4])):61                next_args_2 = file_reader.readline().split(' ')62                project_roles[next_args_1[0]].append((next_args_2[0],int(next_args_2[1])))63        ## More data processing64        ## Skills to people65        ## ALGO66        number_of_executed_project =  global_args["number_of_project"]67        from copy import deepcopy68        project_to_tackle = deepcopy(project_name)69        _, indices = torch.sort(torch.Tensor(project_date))70        project_to_tackle = [project_to_tackle[i] for i in indices]71        project_list_in_order = []72        contributors = {}73        step = 074        while len(project_to_tackle) > 0:75            step += 176            if step > len(project_to_tackle):77                break78            project = project_to_tackle[0]79            project_to_tackle.remove(project)80            project_to_tackle.append(project)81            drop_project = False82            skills = deepcopy(project_roles[project])83            contributors[project] = deepcopy(skills)84            people_to_upgrade = []85            skills_backup = deepcopy(skills)86            if project=="PhoneUltrav1":87                a=088            while len(skills) > 0:89                availability = 10000090                num_item = 091                for num, (skill, level) in enumerate(skills):92                    avail = count_number_available_dude(skill_level_to_contributor[skill], level)93                    if avail < availability:94                        availability = avail95                        num_item = num96                97                skill, level = skills[num_item]98                num_item_backup = contributors[project].index((skill, level))99                if not drop_project:100                    level_to_contributor = skill_level_to_contributor[skill]101                    102                    if level not in level_to_contributor.keys():103                        # Skip this project (for now :) 104                        drop_project = True105                        break106                    else:107                        # Pick108                        list_of_potential_contributors = []109                        level_max = max(level_to_contributor.keys())110                        candidate_for_mentorring = level_to_contributor[level-1]111                        for i in range(level,level_max+1):112                            list_of_potential_contributors += level_to_contributor[i]113                        114                        found_contributor = False115                        #filter 1116                        list_of_potential_contributors_2 = []117                        for contrib_potential in list_of_potential_contributors:118                            if not contrib_potential in contributors[project]:119                                list_of_potential_contributors_2.append(contrib_potential)120                        121                        found_mentor = False122                        for mentor in list_of_potential_contributors_2:123                            if found_mentor:124                                continue125                            item_mentor = 0126                            for iiiii, (skill__, level__) in enumerate(skills):127                                if iiiii== num_item:128                                    continue129                                if skill__ in contributors_skills[mentor]:130                                    if contributors_skills[mentor][skill__] >=level__:131                                        found_mentor = True132                                        mentor = mentor133                                        skill_mentor = skill__134                                        level_mentor = level__135                                        item_mentor = iiiii136                                        break137                        138                        if found_mentor and len(candidate_for_mentorring)>0:139                            found_contributor = True140                            item_mentor_back = contributors[project].index((skill_mentor, level_mentor))141                            if num_item>=item_mentor:142                                print(num_item, item_mentor)143                                skills.pop(num_item)144                                skills.pop(item_mentor)145                            else:146                                print(item_mentor)147                                skills.pop(item_mentor)148                                skills.pop(num_item)149                            num_project_per_people[candidate_for_mentorring[0]]+=1150                            151                            contributors[project][num_item_backup] = candidate_for_mentorring[0]152                            contributors[project][item_mentor_back] = mentor153                            try:154                                if contributors_skills[mentor][skill_mentor] == level_mentor:155                                    people_to_upgrade.append((mentor, skill_mentor))156                            except:157                                a=0158                            people_to_upgrade.append((candidate_for_mentorring[0], skill))159                        else:160                            list_num_project = []161                            if len(list_of_potential_contributors_2)>0:162                                for contrib_potential in list_of_potential_contributors_2:163                                    list_num_project.append(num_project_per_people[contrib_potential])164                                index = torch.argmin(torch.Tensor(list_num_project))165                                # contrib_potential = list_of_potential_contributors_2[index.int().item()]166                                contrib_potential = list_of_potential_contributors_2[0]167                                found_contributor = True168                                skills.pop(num_item)169                                num_project_per_people[contrib_potential]+=1170                                contributors[project][num_item_backup] = contrib_potential171                                if contributors_skills[contrib_potential][skill] == level:172                                    people_to_upgrade.append((contrib_potential, skill))173                        if not found_contributor:174                            drop_project = True175                            break176            if not drop_project:177                step = 0178                # Upgrade contributors skills.179                for people, skill in people_to_upgrade:180                    old_level = contributors_skills[people][skill]181                    contributors_skills[people][skill] += 1182                    skill_level_to_contributor[skill][old_level].remove(people)183                    if not old_level+1 in skill_level_to_contributor[skill].keys():184                        skill_level_to_contributor[skill][old_level+1] = []185                    skill_level_to_contributor[skill][old_level+1].append(people)186                project_to_tackle.remove(project)187                project_list_in_order.append(project)188        with open(path[:-4] + "_output.txt", 'w') as file_reader:189            file_reader.write(f"{len(project_list_in_order)}\n")190            for i, name in enumerate(project_list_in_order):191                file_reader.write(f"{name}\n")192                contrib = contributors[name]193                my_str = (" ").join(contrib)194                file_reader.write(f"{my_str}\n")195    print("done")196def count_number_available_dude(skill_level_to_contributor_skill, level):197    level_max = max(skill_level_to_contributor_skill.keys())198    reutrn_val = 0199    for i in range(level, level_max+1):200        reutrn_val += len(skill_level_to_contributor_skill[i])201    return reutrn_val202if __name__ == '__main__':203    main("./input/f_find_great_mentors.in.txt")204    main("./input/a_an_example.in.txt")205    main("./input/b_better_start_small.in.txt")206    main("./input/c_collaboration.in.txt")207    main("./input/d_dense_schedule.in.txt")...

gen3_deleter.py

Source:gen3_deleter.py

1"""Utility, deletes projects and nodes.  Edit types array for your deployment."""2import os3import sys4import logging5from gen3_etl.utils.cli import default_argument_parser6from gen3_etl.utils.gen3 import delete_all, submission_client7DEFAULT_PROGRAM = None8DEFAULT_PROJECT = None9DEFAULT_CREDENTIALS_PATH = os.path.join('config', 'credentials.json')10DEFAULT_ENDPOINT = 'https://localhost'11DEFAULT_TYPES = ['submitted_methylation', 'submitted_somatic_mutation', 'read_group', 'demographic', 'aliquot', 'sample', 'bcc_diagnosis', 'diagnosis', 'bcc_demographic', 'demographic', 'bcc_participant', 'case', 'experiment']12DEFAULT_BATCH_SIZE = 10013DEFAULT_DROP_PROJECT = False14logger = logging.getLogger('gen3_deleter')15def delete(program, project, submission_client, types=DEFAULT_TYPES, batch_size=DEFAULT_BATCH_SIZE, drop_project=DEFAULT_DROP_PROJECT):16    """Delete all content from project."""17    delete_all(submission_client, program, project, types=types, batch_size=batch_size)18    try:19        if drop_project:20            print(submission_client.delete_project(program, project), file=sys.stderr)21    except Exception as e:22        print(e)23    # try:24    #     print(submission_client.delete_program(program), file=sys.stderr)25    # except Exception as e:26    #     print(e)27if __name__ == "__main__":28    parser = default_argument_parser(29        description='deletes all content for project'30    )31    parser.add_argument('--program', type=str,32                        default=DEFAULT_PROGRAM,33                        help='Name of existing gen3 program ({}).'.format(DEFAULT_PROGRAM))34    parser.add_argument('--project', type=str,35                        default=DEFAULT_PROJECT,36                        help='Name of existing gen3 project ({}).'.format(DEFAULT_PROJECT))37    parser.add_argument('--credentials_path', type=str,38                        default=DEFAULT_CREDENTIALS_PATH,39                        help='Location of gen3 path ({}).'.format(DEFAULT_CREDENTIALS_PATH))40    parser.add_argument('--endpoint', type=str,41                        default=DEFAULT_ENDPOINT,42                        help='gen3 host base url ({}).'.format(DEFAULT_ENDPOINT))43    parser.add_argument('--types', type=str,44                        default=DEFAULT_TYPES,45                        nargs='*',46                        help='list of entitites to delete ({}).'.format(DEFAULT_TYPES))47    parser.add_argument('--batch_size', type=int,48                        default=DEFAULT_BATCH_SIZE,49                        help='Number of records to send to gen3 at a time({}).'.format(DEFAULT_BATCH_SIZE))50    parser.add_argument('--drop_project', type=bool,51                        default=DEFAULT_DROP_PROJECT,52                        help=f'Drop project ({DEFAULT_DROP_PROJECT}).')53    log_fmt = '%(asctime)s - %(name)s - %(levelname)s - %(message)s'54    logging.basicConfig(level=logging.INFO, format=log_fmt)55    args = parser.parse_args()56    delete(program=args.program,57           project=args.project,58           submission_client=submission_client(refresh_file=args.credentials_path, endpoint=args.endpoint),59           types=args.types,60           batch_size=args.batch_size,61           drop_project=args.drop_project...

projects.py

Source:projects.py

...4142@app.route('/projects/<string:project_id>', methods=['DELETE'])43def delete_project(project_id):44    try:45        drop_project(project_id)46        return jsonify(api_response(status="success")), 20047    except (ValueError, AttributeError, RuntimeError) as e:48        return jsonify(api_response(status="fail", error=str(e))), 500
...

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