How to use terminate_p method in fMBT

Best Python code snippet using fMBT_python

analysis.py

Source:analysis.py

1'''Analysis datatype class'''2# General Import3import sys4# App Import5from basepair.helpers import eprint6from bin.common_parser import add_common_args, add_single_uid_parser, add_uid_parser, add_json_parser, \7  add_tags_parser, add_outdir_parser, valid_uid, validate_analysis_yaml8class Analysis:9  '''Analysis action methods'''10  @staticmethod11  def create_analysis(bp_api, args):12    '''Create and submit an analysis'''13    params = {'node': {}, 'info': {}}14    if args.instance:15      try:16        instance_choices = bp_api.get_instances()17      except KeyError:18        sys.exit('ERROR: Failed to get instance data.')19      if args.instance not in instance_choices:20        sys.exit('ERROR: invalid instance_type available instances - {}'.format(' '.join(instance_choices)))21      params['info']['instance_type'] = args.instance22    if args.custom_pipeline or args.custom_modules:23      validate_analysis_yaml(args.custom_pipeline if args.custom_pipeline else args.custom_modules)24    if args.params:25      for param in args.params:26        try:27          node_id, arg, val = param.split(':')28          if node_id not in params['node']:29            params['node'][node_id] = {}30          params['node'][node_id][arg] = val31        except ValueError:32          sys.exit('ERROR: Missing : in params values.')33    else:34      eprint('You specified no parameters, submitting with default ones.')35    return bp_api.create_analysis(36        control_ids=args.control or [],37        ignore_validation_warnings=args.ignore_warning,38        params=params,39        project_id=args.project,40        sample_ids=args.sample,41        workflow_id=args.pipeline,42        pipeline_yaml=args.custom_pipeline,43        module_yaml=args.custom_modules44      )45  @staticmethod46  def delete_analysis(bp_api, args):47    '''Delete analysis'''48    uids = args.uid49    all_fail = True50    for uid in uids:51      answer = bp_api.yes_or_no('Are you sure you want to delete {}?'.format(uid))52      if answer:53        all_fail = not bool(bp_api.delete_analysis(uid)) and all_fail54    if all_fail:55      sys.exit('ERROR: Deleting analysis failed.')56  @staticmethod57  def download_analysis(bp_api, args):58    '''Download analysis'''59    # download a file from an analysis by tags60    all_fail = True61    for each_uid in args.uid:62      analysis = bp_api.get_analysis(each_uid)63      all_fail = not (bool(analysis.get('id')) \64        and bool(bp_api.download_analysis(each_uid, analysis=analysis, outdir=args.outdir, tagkind=args.tagkind, tags=args.tags))) \65        and all_fail66    if all_fail:67      sys.exit('ERROR: Downloading analysis failed.')68    eprint('All analysis files have been downloaded successfully.')69  @staticmethod70  def download_log_analysis(bp_api, args):71    '''Download analysis log'''72    all_fail = True73    for uid in args.uid:74      analysis = bp_api.get_analysis(uid)  # check analysis id is valid75      all_fail = not (bool(analysis.get('id')) and bool(bp_api.get_log(uid, args.outdir))) and all_fail76    if all_fail:77      sys.exit('ERROR: Downloading logs failed.')78  @staticmethod79  def get_analysis(bp_api, args):80    '''Get analysis'''81    all_fail = True82    for uid in args.uid:83      all_fail = not bool(bp_api.print_data(data_type='analysis', uid=uid, is_json=args.json)) and all_fail84    if all_fail:85      sys.exit('ERROR: Analyses data not found.')86  @staticmethod87  def list_analysis(bp_api, args):88    '''List analyses'''89    bp_api.print_data(data_type='analyses', is_json=args.json, project=args.project)90  @staticmethod91  def reanalyze_analysis(bp_api, args):92    '''Restart analysis'''93    if args.instance:94      try:95        instance_choices = bp_api.get_instances()96      except KeyError:97        sys.exit('ERROR: Failed to get instance data.')98      if args.instance not in instance_choices:99        sys.exit('ERROR: invalid instance_type available instances - {}'.format(' '.join(instance_choices)))100    all_fail = True101    for each_uid in args.uid:102      all_fail = not bool(bp_api.restart_analysis(each_uid, args.instance)) and all_fail103    if all_fail:104      sys.exit('ERROR: while re-analyze the analysis data.')105  @staticmethod106  def terminate_analysis(bp_api, args):107    '''Terminate analysis'''108    for each_uid in args.uid:109      bp_api.terminate_analysis(each_uid)110  @staticmethod111  def update_analysis(bp_api, args):112    '''Update analysis'''113    data = {}114    if args.key and args.val:115      for key, val in zip(args.key, args.val):116        data[key] = val117    bp_api.update_analysis(args.uid, data)118  @staticmethod119  def analysis_action_parser(action_parser):120    '''Analysis parser'''121    # create analysis parser122    create_analysis_p = action_parser.add_parser(123      'create',124      help='Create and run an analysis.'125    )126    create_analysis_p = add_common_args(create_analysis_p)127    create_analysis_p.add_argument(128      '--control', nargs='+', help='Control id', type=valid_uid129    )130    create_analysis_p.add_argument(131      '--custom-modules', dest='custom_modules', help='Path to custom module yaml files', nargs='+'132    )133    create_analysis_p.add_argument(134      '--custom-pipeline', dest='custom_pipeline', help='Path to custom pipeline yaml file',135    )136    create_analysis_p.add_argument(137      '--ignore-warning',138      action='store_true',139      default=False,140      help='Ignore validation warnings',141    )142    create_analysis_p.add_argument(143      '--instance', help='instance_type for analysis'144    )145    create_analysis_p.add_argument('--params', nargs='+')146    create_analysis_p.add_argument('--project', help='Project id', type=valid_uid)147    create_analysis_p.add_argument(148      '--pipeline', help='Pipeline id', type=valid_uid149    )150    create_analysis_p.add_argument(151      '--sample', nargs='+', help='Sample id', required=True, type=valid_uid152    )153    # delete analysis parser154    delete_analysis_p = action_parser.add_parser(155      'delete',156      help='delete an analysis.'157    )158    delete_analysis_p = add_common_args(delete_analysis_p)159    delete_analysis_p = add_uid_parser(delete_analysis_p, 'analysis')160    # download analysis parser161    download_analysis_p = action_parser.add_parser(162      'download',163      help='Download files for one or more analyses. Can filter by file tags.'164    )165    download_analysis_p = add_uid_parser(download_analysis_p, 'analysis')166    download_analysis_p = add_tags_parser(download_analysis_p)167    download_analysis_p = add_outdir_parser(download_analysis_p)168    download_analysis_p = add_common_args(download_analysis_p)169    # download analysis log parser170    download_log_p = action_parser.add_parser(171      'download-log',172      help='Download analysis logs for one or more analyses.'173    )174    download_log_p = add_uid_parser(download_log_p, 'analysis')175    download_log_p = add_outdir_parser(download_log_p)176    download_log_p = add_common_args(download_log_p)177    # get analysis parser178    get_analysis_p = action_parser.add_parser(179      'get',180      help='Get details of an analysis.'181    )182    get_analysis_p = add_common_args(get_analysis_p)183    get_analysis_p = add_uid_parser(get_analysis_p, 'analysis')184    get_analysis_p = add_json_parser(get_analysis_p)185    # list analysis parser186    list_analyses_p = action_parser.add_parser(187      'list',188      help='List basic info about your analyses.'189    )190    list_analyses_p.add_argument(191      '--project',192      help='List analyses of a project.',193      required=True,194      type=valid_uid195    )196    list_analyses_p = add_common_args(list_analyses_p)197    list_analyses_p = add_json_parser(list_analyses_p)198    # reanalyze parser199    reanalyze_p = action_parser.add_parser(200      'reanalyze',201      help='Reanalyze analyses.'202    )203    reanalyze_p.add_argument(204      '--instance', help='instance_type for analysis'205    )206    reanalyze_p = add_common_args(reanalyze_p)207    reanalyze_p = add_uid_parser(reanalyze_p, 'analysis')208    # terminate parser209    terminate_p = action_parser.add_parser(210      'terminate',211      help='Terminate analyses.'212    )213    terminate_p = add_common_args(terminate_p)214    terminate_p = add_uid_parser(terminate_p, 'analysis')215    # update an analysis parser216    update_analysis_parser = action_parser.add_parser(217      'update',218      help='Update information associated with an analysis.'219    )220    update_analysis_parser.add_argument('--key', action='append', required=True)221    update_analysis_parser.add_argument('--val', action='append', required=True)222    update_analysis_parser = add_common_args(update_analysis_parser)223    update_analysis_parser = add_single_uid_parser(update_analysis_parser, 'analysis')...

main.py

Source:main.py

...8    make_window,9    set_process_state,10    take_screenshot,11)12def terminate_p(p):13    if p:14        p.terminate()15def main():16    run_key = "F9"17    config = load_config()18    window = make_window("New World - Ressource Bot", run_key)19    down_run_key = False20    p = None21    p_route = None22    while True:23        event, values = window.read()24        if event == "Exit" or event == sg.WIN_CLOSED:25            terminate_p(p)26            terminate_p(p_route)27            break28        if event == "-POS-":29            terminate_p(p)30            terminate_p(p_route)31            down_run_key = set_process_state(False, window, run_key)32            img = Image.fromarray(take_screenshot(True))33            selector = RectangleSelection(img)34            while not selector.done:35                pass36            selector.close()37            edit_config("screenshot_rectangle", selector.rectangle, config)38        if event == run_key:39            down_run_key = set_process_state(not down_run_key, window, run_key)40        if event == "-RECORD_ROUTE-":41            print("test")42            route_name = values["-NEW_ROUTE_NAME-"]43            print(route_name)44            if route_name.isalnum():45                terminate_p(p)46                terminate_p(p_route)47                down_run_key = set_process_state(False, window, run_key)48                p_route = Process(49                    target=main_create_new_route,50                    args=(51                        config["screenshot_rectangle"],52                        route_name,53                    ),54                )55                p_route.start()56                print("started")57        if down_run_key:58            terminate_p(p)59            terminate_p(p_route)60            print("Starting process")61            p = Process(62                target=main_process,63                args=(config["screenshot_rectangle"],),64            )65            p.start()66        else:67            terminate_p(p)68if __name__ == "__main__":...

ur_voice.py

Source:ur_voice.py

...34            t.start()35        else:36            self.playing = False37            print("* stopped")38    def terminate_p(self):39        print("TERMINATING")40        self.stream.stop_stream()41        self.stream.close()42        self.p.terminate()43        self.t.join()44    def __del__(self):45        self.terminate_p()46if __name__=="__main__":...

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