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How to use remove_file method in lisa

Best Python code snippet using lisa_python

test_GLocalTest.py

Source:test_GLocalTest.py

...37        from helper_functions import cleanUp_RandomParticleList38        from os import system39        for ii in range(0, self.settings["niteration"]):40            fname = str(ii)+'-All.em'41            self.remove_file( filename=fname)42            fname = str(ii)+'-AllFiltered*.em'43            system('rm '+fname)44            fname = str(ii)+'-Even.em'45            self.remove_file( filename=fname)46            fname = str(ii)+'-EvenFiltered.em'47            self.remove_file( filename=fname)48            fname = str(ii)+'-EvenFiltered-PreWedge.em'49            self.remove_file( filename=fname)50            fname = str(ii)+'-EvenFiltered-WedgeSumUnscaled.em'51            self.remove_file( filename=fname)52            fname = str(ii)+'-Odd.em'53            self.remove_file( filename=fname)54            fname = str(ii)+'-OddFiltered.em'55            self.remove_file( filename=fname)56            fname = str(ii)+'-OddFiltered-PreWedge.em'57            self.remove_file( filename=fname)58            fname = str(ii)+'-OddFiltered-WedgeSumUnscaled.em'59            self.remove_file( filename=fname)60            fname = str(ii)+'-FSC.dat'61            self.remove_file( filename=fname)62            fname = str(ii)+'-Filter.dat'63            self.remove_file( filename=fname)64            fname = str(ii)+'-GLocalAlignmentJob.xml'65            self.remove_file( filename=fname)66            fname = str(ii)+'-ParticleListEven.xml'67            self.remove_file( filename=fname)68            fname = str(ii)+'-ParticleListOdd.xml'69            self.remove_file( filename=fname)70            fname = str(ii)+'-ParticleList.xml'71            self.remove_file( filename=fname)72        self.remove_file( filename='average-Final.em')73        self.remove_file( filename='average-Final-PreWedge.em')74        self.remove_file( filename='average-Final-WedgeSumUnscaled.em')75        self.remove_file( filename='FSC-Final.dat')76        self.remove_file( filename='myGLocal.xml')77        self.remove_file( filename='average-Final-Even.em')78        self.remove_file( filename='average-Final-Even-PreWedge.em')79        self.remove_file( filename='average-Final-Even-WedgeSumUnscaled.em')80        self.remove_file( filename='average-Final-Odd.em')81        self.remove_file( filename='average-Final-Odd-PreWedge.em')82        self.remove_file( filename='average-Final-Odd-WedgeSumUnscaled.em')83        fname='average-FinalFiltered_*.em'84        system('rm '+fname)85        system(f'rm {self.pl_filename}')86        #cleanUp_RandomParticleList( pl_filename=self.pl_filename, pdir=self.pdir)87    def remove_file(self, filename):88        """89        assert that file exists end remove it90        """91        from os import remove92        from os import path93        filecheck = path.exists(filename)94        if not filecheck:95            print(filename+" does not exist")96        self.assertTrue( filecheck, msg="file "+filename+" does not exist")97        if filecheck:98            remove(filename)99    def xtest_Score(self):100        """101        test implementation of different scores...

pytom_GLocalTest.py

Source:pytom_GLocalTest.py

...36        from helper_functions import cleanUp_RandomParticleList37        from os import system38        for ii in range(0, self.settings["niteration"]+1):39            fname = str(ii)+'-All.em'40            self.remove_file( filename=fname)41            fname = str(ii)+'-AllFiltered*.em'42            system('rm '+fname)43            fname = str(ii)+'-Even.em'44            self.remove_file( filename=fname)45            fname = str(ii)+'-EvenFiltered.em'46            self.remove_file( filename=fname)47            fname = str(ii)+'-EvenFiltered-PreWedge.em'48            self.remove_file( filename=fname)49            fname = str(ii)+'-EvenFiltered-WedgeSumUnscaled.em'50            self.remove_file( filename=fname)51            fname = str(ii)+'-Odd.em'52            self.remove_file( filename=fname)53            fname = str(ii)+'-OddFiltered.em'54            self.remove_file( filename=fname)55            fname = str(ii)+'-OddFiltered-PreWedge.em'56            self.remove_file( filename=fname)57            fname = str(ii)+'-OddFiltered-WedgeSumUnscaled.em'58            self.remove_file( filename=fname)59            fname = str(ii)+'-FSC.dat'60            self.remove_file( filename=fname)61            fname = str(ii)+'-Filter.dat'62            self.remove_file( filename=fname)63            fname = str(ii)+'-GLocalAlignmentJob.xml'64            self.remove_file( filename=fname)65            fname = str(ii)+'-ParticleListEven.xml'66            self.remove_file( filename=fname)67            fname = str(ii)+'-ParticleListOdd.xml'68            self.remove_file( filename=fname)69            fname = str(ii)+'-ParticleList.xml'70            self.remove_file( filename=fname)71        self.remove_file( filename='average-Final.em')72        self.remove_file( filename='average-Final-PreWedge.em')73        self.remove_file( filename='average-Final-WedgeSumUnscaled.em')74        self.remove_file( filename='FSC-Final.dat')75        self.remove_file( filename='myGLocal.xml')76        self.remove_file( filename='average-Final-Even.em')77        self.remove_file( filename='average-Final-Even-PreWedge.em')78        self.remove_file( filename='average-Final-Even-WedgeSumUnscaled.em')79        self.remove_file( filename='average-Final-Odd.em')80        self.remove_file( filename='average-Final-Odd-PreWedge.em')81        self.remove_file( filename='average-Final-Odd-WedgeSumUnscaled.em')82        fname='average-FinalFiltered_*.em'83        system('rm '+fname)84        #cleanUp_RandomParticleList( pl_filename=self.pl_filename, pdir=self.pdir)85    def remove_file(self, filename):86        """87        assert that file exists end remove it88        """89        from os import remove90        from os import path91        filecheck = path.exists(filename)92        if not filecheck:93            print(filename+" does not exist")94        self.assertTrue( filecheck, msg="file "+filename+" does not exist")95        if filecheck:96            remove(filename)97    def xtest_Score(self):98        """99        test implementation of different scores...

post_gen_project.py

Source:post_gen_project.py

1#!/usr/bin/env python2import os3import shutil4PROJECT_DIRECTORY = os.path.realpath(os.path.curdir)5def remove_file(filepath):6    os.remove(os.path.join(PROJECT_DIRECTORY, filepath))7def remove_directory(dirpath):8    shutil.rmtree(os.path.join(PROJECT_DIRECTORY, dirpath), ignore_errors=False, onerror=None)9if __name__ == '__main__':10    if '{{ cookiecutter.authors_format }}' == 'Markdown':11        remove_file('AUTHORS.rst')12        remove_file('docs/source/AUTHORS.rst')13    elif '{{ cookiecutter.authors_format }}' == 'reStructuredText':14        remove_file('AUTHORS.md')15        remove_file('docs/source/AUTHORS.md')16    else:17        remove_file('AUTHORS.rst')18        remove_file('docs/source/AUTHORS.rst')19        remove_file('AUTHORS.md')20        remove_file('docs/source/AUTHORS.md')21    if '{{ cookiecutter.readme_format }}' == 'Markdown':22        remove_file('README.rst')23        remove_file('docs/source/README.rst')24    elif '{{ cookiecutter.readme_format }}' == 'reStructuredText':25        remove_file('README.md')26        remove_file('docs/source/README.md')27    if '{{ cookiecutter.changelog_format }}' == 'Markdown':28        remove_file('CHANGELOG.rst')29        remove_file('docs/source/CHANGELOG.rst')30    elif '{{ cookiecutter.changelog_format }}' == 'reStructuredText':31        remove_file('CHANGELOG.md')32        remove_file('docs/source/CHANGELOG.md')33    else:34        remove_file('CHANGELOG.rst')35        remove_file('docs/source/CHANGELOG.rst')36        remove_file('CHANGELOG.md')37        remove_file('docs/source/CHANGELOG.md')38    if '{{ cookiecutter.license }}' == 'None':39        remove_file('LICENSE')40        remove_file('docs/source/license.rst')41    if '{{ cookiecutter.use_sphinx_documentation }}' == 'no':42        remove_directory('docs')43    if '{{ cookiecutter.install_issues_templates }}' == 'no':44        remove_directory('.github')45        remove_directory('.gitlab')46    elif '{{ cookiecutter.install_issues_templates }}' == 'Gitlab':47        remove_directory('.github')48    elif '{{ cookiecutter.install_issues_templates }}' == 'Github':...

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