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How to use library_path method in localstack

Best Python code snippet using localstack_python

library.py

Source:library.py

...14from core.settings import settings15from core.settings.settings import control16from core.tasks import app17UPDATE_FREQUENCY = 0.518def get_library_path() -> str:19    """Returns the absolute path of the local library."""20    return os.path.abspath(os.path.join(conf.SONGS_CACHE_DIR, "local_library"))21@control22def list_subdirectories(request: WSGIRequest) -> HttpResponse:23    """Returns a list of all subdirectories for the given path."""24    path = request.GET.get("path")25    if path is None:26        return HttpResponseBadRequest("path was not supplied.")27    basedir, subdirpart = os.path.split(path)28    if path == "":29        suggestions = ["/"]30    elif os.path.isdir(basedir):31        suggestions = [32            os.path.join(basedir, subdir + "/")...

base.py

Source:base.py

1#!/usr/bin/env python2# vim:fileencoding=UTF-8:ts=4:sw=4:sta:et:sts=4:ai3from __future__ import (unicode_literals, division, absolute_import,4                        print_function)5__license__   = 'GPL v3'6__copyright__ = '2011, Kovid Goyal <kovid@kovidgoyal.net>'7__docformat__ = 'restructuredtext en'8import unittest, os, shutil, tempfile, atexit, gc9from functools import partial10from io import BytesIO11from future_builtins import map12rmtree = partial(shutil.rmtree, ignore_errors=True)13class BaseTest(unittest.TestCase):14    longMessage = True15    maxDiff = None16    def setUp(self):17        self.library_path = self.mkdtemp()18        self.create_db(self.library_path)19    def tearDown(self):20        gc.collect(), gc.collect()21        shutil.rmtree(self.library_path)22    def create_db(self, library_path):23        from calibre.library.database2 import LibraryDatabase224        if LibraryDatabase2.exists_at(library_path):25            raise ValueError('A library already exists at %r'%library_path)26        src = os.path.join(os.path.dirname(__file__), 'metadata.db')27        dest = os.path.join(library_path, 'metadata.db')28        shutil.copyfile(src, dest)29        db = LibraryDatabase2(library_path)30        db.set_cover(1, I('lt.png', data=True))31        db.set_cover(2, I('polish.png', data=True))32        db.add_format(1, 'FMT1', BytesIO(b'book1fmt1'), index_is_id=True)33        db.add_format(1, 'FMT2', BytesIO(b'book1fmt2'), index_is_id=True)34        db.add_format(2, 'FMT1', BytesIO(b'book2fmt1'), index_is_id=True)35        db.conn.close()36        return dest37    def init_cache(self, library_path=None):38        from calibre.db.backend import DB39        from calibre.db.cache import Cache40        backend = DB(library_path or self.library_path)41        cache = Cache(backend)42        cache.init()43        return cache44    def mkdtemp(self):45        ans = tempfile.mkdtemp(prefix='db_test_')46        atexit.register(rmtree, ans)47        return ans48    def init_old(self, library_path=None):49        from calibre.library.database2 import LibraryDatabase250        return LibraryDatabase2(library_path or self.library_path)51    def init_legacy(self, library_path=None):52        from calibre.db.legacy import LibraryDatabase53        return LibraryDatabase(library_path or self.library_path)54    def clone_library(self, library_path):55        if not hasattr(self, 'clone_dir'):56            self.clone_dir = tempfile.mkdtemp()57            atexit.register(rmtree, self.clone_dir)58            self.clone_count = 059        self.clone_count += 160        dest = os.path.join(self.clone_dir, str(self.clone_count))61        shutil.copytree(library_path, dest)62        return dest63    @property64    def cloned_library(self):65        return self.clone_library(self.library_path)66    def compare_metadata(self, mi1, mi2):67        allfk1 = mi1.all_field_keys()68        allfk2 = mi2.all_field_keys()69        self.assertEqual(allfk1, allfk2)70        all_keys = {'format_metadata', 'id', 'application_id',71                    'author_sort_map', 'author_link_map', 'book_size',72                    'ondevice_col', 'last_modified', 'has_cover',73                    'cover_data'}.union(allfk1)74        for attr in all_keys:75            if attr == 'user_metadata':76                continue77            attr1, attr2 = getattr(mi1, attr), getattr(mi2, attr)78            if attr == 'formats':79                attr1, attr2 = map(lambda x:tuple(x) if x else (), (attr1, attr2))80            if isinstance(attr1, (tuple, list)) and 'authors' not in attr and 'languages' not in attr:81                attr1, attr2 = set(attr1), set(attr2)82            self.assertEqual(attr1, attr2,83                    '%s not the same: %r != %r'%(attr, attr1, attr2))84            if attr.startswith('#'):85                attr1, attr2 = mi1.get_extra(attr), mi2.get_extra(attr)86                self.assertEqual(attr1, attr2,...

_library_paths.py

Source:_library_paths.py

1from __future__ import annotations2import os3from dataclasses import dataclass4from threading import Lock5from ._config import AppConfig6class _LibraryMeta(type):7    _instances = {}8    _lock: Lock = Lock()9    def __call__(cls, grch: str = "hg38") -> _LibraryPaths:10        with cls._lock:11            if cls not in cls._instances:12                if grch == "hg38":13                    instance = _LibraryPaths3814                else:15                    instance = _LibraryPaths1916                cls._instances[cls] = instance.__call__()17        return cls._instances[cls]18@dataclass19class _LibraryPaths:20    # PICARD: str = os.path.join(AppConfig.LIBRARY_PATH, "picard.jar")21    # GATK: str = os.path.join(AppConfig.LIBRARY_PATH, "GenomeAnalysisTK.jar")22    # GATK4: str = os.path.join(AppConfig.LIBRARY_PATH, "gatk-4.1.0.0", "gatk")23    # VARSCAN: str = os.path.join(AppConfig.LIBRARY_PATH, "VarScan.v2.3.9.jar")24    # FASTQC: str = os.path.join(AppConfig.LIBRARY_PATH, "FastQC", "fastqc")25    # FASTP: str = os.path.join(AppConfig.LIBRARY_PATH, "fastp", "fastp")26    # STRELKA: str = os.path.join(27    #     AppConfig.LIBRARY_PATH,28    #     "strelka-2.9.10.centos6_x86_64",29    #     "bin",30    #     "configureStrelkaSomaticWorkflow.py",31    # )32    # SOMATICSNIPER: str = os.path.join(33    #     AppConfig.LIBRARY_PATH, "somatic-sniper", "build", "bin", "bam-somaticsniper"34    # )35@dataclass36class _LibraryPaths38(_LibraryPaths):37    REF_DIR: str = os.path.join(38        AppConfig.LIBRARY_PATH, "ref_genome_indexes", "hg38_bundle"39    )40    DBSNP: str = os.path.join(41        AppConfig.LIBRARY_PATH,42        "ref_genome_indexes",43        "hg38_bundle",44        "dbsnp_146.hg38.vcf.gz",45    )46    MILLS_INDEL: str = os.path.join(47        AppConfig.LIBRARY_PATH,48        "ref_genome_indexes",49        "hg38_bundle",50        "Mills_and_1000G_gold_standard.indels.hg38.vcf.gz",51    )52    COSMIC: str = os.path.join(53        AppConfig.LIBRARY_PATH,54        "ref_genome_indexes",55        "hg19_bundle",56        "cosmic_hg19_lifted_over.vcf",57    )58    ANNOVAR: str = os.path.join(AppConfig.LIBRARY_PATH, "annovar")59    ANNOVAR_DB: str = os.path.join(AppConfig.LIBRARY_PATH, "annovar", "humandb_38")60    ONE_THOUSAND_G: str = os.path.join(61        AppConfig.LIBRARY_PATH,62        "ref_genome_indexes",63        "hg38_bundle",64        "1000G_phase1.snps.high_confidence.hg38.vcf.gz",65    )66@dataclass67class _LibraryPaths19(_LibraryPaths):68    REF_DIR: str = os.path.join(69        AppConfig.LIBRARY_PATH, "ref_genome_indexes", "hg19_bundle"70    )71    DBSNP: str = os.path.join(72        AppConfig.LIBRARY_PATH,73        "ref_genome_indexes",74        "hg19_bundle",75        "dbsnp_138.hg19.vcf.gz",76    )77    MILLS_INDEL: str = os.path.join(78        AppConfig.LIBRARY_PATH,79        "ref_genome_indexes",80        "hg19_bundle",81        "Mills_and_1000G_gold_standard.indels.hg19.sites.vcf.gz",82    )83    COSMIC: str = os.path.join(84        AppConfig.LIBRARY_PATH,85        "ref_genome_indexes",86        "hg19_bundle",87        "cosmic_hg19_lifted_over.vcf",88    )89    ANNOVAR: str = os.path.join(AppConfig.LIBRARY_PATH, "annovar")90    ANNOVAR_DB: str = os.path.join(AppConfig.LIBRARY_PATH, "annovar", "humandb")91    ONE_THOUSAND_G: str = os.path.join(92        AppConfig.LIBRARY_PATH,93        "ref_genome_indexes",94        "hg19_bundle",95        "1000G_phase1.snps.high_confidence.hg19.sites.vcf.gz",96    )97@dataclass98class LibraryPaths(metaclass=_LibraryMeta):99    """100    Only this class is imported from outside101    Metaclass will automatically create the correct instance...

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