How to use check_present method in robotframework-appiumlibrary

Best Python code snippet using robotframework-appiumlibrary_python
test_dynamic_tool_destination.py
Source:test_dynamic_tool_destination.py
...67    # =======================map_tool_to_destination()================================68    @log_capture()69    def test_brokenDestYML(self, l):70        self.assertRaises(JobMappingException, map_tool_to_destination, runJob, theApp, vanillaTool, "user@email.com", True, broken_default_dest_path, job_conf_path)71        l.check_present(72            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),73            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'No global default destination specified in config!'),74            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),75            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test3.full'),76            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total size: 3.23 KB'),77        )78    @log_capture()79    def test_filesize_empty(self, l):80        self.assertRaises(JobMappingException, map_tool_to_destination, emptyJob, theApp, vanillaTool, "user@email.com", True, path, job_conf_path)81        self.assertRaises(JobMappingException, map_tool_to_destination, emptyJob, theApp, vanillaTool, "user@email.com", True, priority_path, job_conf_path)82        l.check_present(83            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),84            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),85            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test.empty'),86            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total size: 0.00 B'),87            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total number of files: 1'),88            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),89            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),90            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),91            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test.empty'),92            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total size: 0.00 B'),93            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total number of files: 1')94        )95    @log_capture()96    def test_filesize_zero(self, l):97        self.assertRaises(JobMappingException, map_tool_to_destination, zeroJob, theApp, vanillaTool, "user@email.com", True, path, job_conf_path)98        self.assertRaises(JobMappingException, map_tool_to_destination, zeroJob, theApp, vanillaTool, "user@email.com", True, priority_path, job_conf_path)99        l.check_present(100            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),101            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),102            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total size: 0.00 B'),103            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total number of files: 0'),104            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),105            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),106            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),107            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total size: 0.00 B'),108            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total number of files: 0')109        )110    @log_capture()111    def test_filesize_fail(self, l):112        self.assertRaises(JobMappingException, map_tool_to_destination, failJob, theApp, vanillaTool, "user@email.com", True, path, job_conf_path)113        self.assertRaises(JobMappingException, map_tool_to_destination, failJob, theApp, vanillaTool, "user@email.com", True, priority_path, job_conf_path)114        l.check_present(115            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),116            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),117            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test1.full'),118            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total size: 293.00 B'),119            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total number of files: 1'),120            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),121            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),122            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),123            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test1.full'),124            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total size: 293.00 B'),125            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total number of files: 1')126        )127    @log_capture()128    def test_filesize_run(self, l):129        job = map_tool_to_destination(runJob, theApp, vanillaTool, "user@email.com", True, path, job_conf_path)130        self.assertEqual(job, 'Destination1')131        priority_job = map_tool_to_destination(runJob, theApp, vanillaTool, "user@email.com", True, priority_path, job_conf_path)132        self.assertEqual(priority_job, 'Destination1_high')133        l.check_present(134            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),135            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),136            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test3.full'),137            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total size: 3.23 KB'),138            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total number of files: 1'),139            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test' with 'Destination1'."),140            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),141            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),142            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),143            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test3.full'),144            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total size: 3.23 KB'),145            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total number of files: 1'),146            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test' with 'Destination1_high'.")147        )148    @log_capture()149    def test_default_tool(self, l):150        job = map_tool_to_destination(runJob, theApp, defaultTool, "user@email.com", True, path, job_conf_path)151        self.assertEqual(job, 'cluster_default')152        priority_job = map_tool_to_destination(runJob, theApp, defaultTool, "user@email.com", True, priority_path, job_conf_path)153        self.assertEqual(priority_job, 'cluster_default_high')154        l.check_present(155            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),156            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),157            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Tool 'test_tooldefault' not specified in config. Using default destination."),158            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_tooldefault' with 'cluster_default'."),159            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),160            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),161            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),162            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Tool 'test_tooldefault' not specified in config. Using default destination."),163            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_tooldefault' with 'cluster_default_high'.")164        )165    @log_capture()166    def test_arguments_tool(self, l):167        job = map_tool_to_destination(argJob, theApp, argTool, "user@email.com", True, path, job_conf_path)168        self.assertEqual(job, 'Destination6')169        priority_job = map_tool_to_destination(argJob, theApp, argTool, "user@email.com", True, priority_path, job_conf_path)170        self.assertEqual(priority_job, 'Destination6_med')171        l.check_present(172            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),173            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),174            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_arguments' with 'Destination6'."),175            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),176            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),177            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),178            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_arguments' with 'Destination6_med'.")179        )180    @log_capture()181    def test_arguments_arg_not_found(self, l):182        job = map_tool_to_destination(argNotFoundJob, theApp, argTool, "user@email.com", True, path, job_conf_path)183        self.assertEqual(job, 'cluster_default')184        priority_job = map_tool_to_destination(argNotFoundJob, theApp, argTool, "user@email.com", True, priority_path, job_conf_path)185        self.assertEqual(priority_job, 'cluster_default_high')186        l.check_present(187            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),188            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),189            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_arguments' with 'cluster_default'."),190            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),191            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),192            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),193            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_arguments' with 'cluster_default_high'.")194        )195    @log_capture()196    def test_tool_not_found(self, l):197        job = map_tool_to_destination(runJob, theApp, unTool, "user@email.com", True, path, job_conf_path)198        self.assertEqual(job, 'cluster_default')199        priority_job = map_tool_to_destination(runJob, theApp, unTool, "user@email.com", True, priority_path, job_conf_path)200        self.assertEqual(priority_job, 'cluster_default_high')201        l.check_present(202            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),203            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),204            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Tool 'unregistered' not specified in config. Using default destination."),205            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'unregistered' with 'cluster_default'."),206            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),207            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),208            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),209            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Tool 'unregistered' not specified in config. Using default destination."),210            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'unregistered' with 'cluster_default_high'.")211        )212    @log_capture()213    def test_fasta(self, l):214        job = map_tool_to_destination(dbJob, theApp, dbTool, "user@email.com", True, path, job_conf_path)215        self.assertEqual(job, 'Destination4')216        priority_job = map_tool_to_destination(dbJob, theApp, dbTool, "user@email.com", True, priority_path, job_conf_path)217        self.assertEqual(priority_job, 'Destination4_high')218        l.check_present(219            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),220            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),221            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test.fasta'),222            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total amount of records: 10'),223            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_db' with 'Destination4'."),224            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),225            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),226            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),227            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test.fasta'),228            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total amount of records: 10'),229            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_db' with 'Destination4_high'.")230        )231    @log_capture()232    def test_fasta_count(self, l):233        job = map_tool_to_destination(dbcountJob, theApp, dbTool, "user@email.com", True, path, job_conf_path)234        self.assertEqual(job, 'Destination4')235        priority_job = map_tool_to_destination(dbcountJob, theApp, dbTool, "user@email.com", True, priority_path, job_conf_path)236        self.assertEqual(priority_job, 'Destination4_high')237        l.check_present(238            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),239            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),240            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test.fasta'),241            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total amount of records: 6'),242            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_db' with 'Destination4'."),243            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),244            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),245            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),246            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Loading file: input1' + script_dir + '/data/test.fasta'),247            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Total amount of records: 6'),248            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_db' with 'Destination4_high'.")249        )250    @log_capture()251    def test_no_verbose(self, l):252        job = map_tool_to_destination(runJob, theApp, noVBTool, "user@email.com", True, no_verbose_path, job_conf_path)253        self.assertEqual(job, 'Destination1')254        l.check_present(255            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_no_verbose' with 'Destination1'.")256        )257    @log_capture()258    def test_authorized_user(self, l):259        job = map_tool_to_destination(runJob, theApp, usersTool, "user@email.com", True, users_test_path, job_conf_path)260        self.assertEqual(job, 'special_cluster')261        l.check_present(262            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_users' with 'special_cluster'."),263        )264    @log_capture()265    def test_unauthorized_user(self, l):266        job = map_tool_to_destination(runJob, theApp, usersTool, "userblah@email.com", True, users_test_path, job_conf_path)267        self.assertEqual(job, 'lame_cluster')268        l.check_present(269            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Running 'test_users' with 'lame_cluster'.")270        )271# ================================Invalid yaml files==============================272    @log_capture()273    def test_no_file(self, l):274        self.assertRaises(IOError, dt.parse_yaml, path="")275        l.check_present()276    @log_capture()277    def test_bad_nice(self, l):278        dt.parse_yaml(path=yt.ivYMLTest11, job_conf_path=job_conf_path, test=True)279        l.check_present(280            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG',281             "Running config validation..."),282            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG',283             "nice_value goes from -20 to 20; rule 1 in 'spades' has a nice_value of '-21'. Setting nice_value to 0."),284            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')285        )286    @log_capture()287    def test_empty_file(self, l):288        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest2, job_conf_path=job_conf_path, test=True), {})289    @log_capture()290    def test_no_tool_name(self, l):291        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest3, job_conf_path=job_conf_path, test=True), yt.iv3dict)292        l.check_present(293            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),294            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Malformed YML; expected job name, but found a list instead!'),295            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')296        )297    @log_capture()298    def test_no_rule_type(self, l):299        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest4, job_conf_path=job_conf_path, test=True), yt.ivDict)300        l.check_present(301            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),302            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No rule_type found for rule 1 in 'spades'."),303            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')304        )305    @log_capture()306    def test_no_rule_lower_bound(self, l):307        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest51, job_conf_path=job_conf_path, test=True), yt.ivDict)308        l.check_present(309            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),310            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Missing bounds for rule 1 in 'spades'. Ignoring rule."),311            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')312        )313    @log_capture()314    def test_no_rule_upper_bound(self, l):315        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest52, job_conf_path=job_conf_path, test=True), yt.ivDict)316        l.check_present(317            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),318            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Missing bounds for rule 1 in 'spades'. Ignoring rule."),319            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')320        )321    @log_capture()322    def test_no_rule_arg(self, l):323        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest53, job_conf_path=job_conf_path, test=True), yt.ivDict53)324        l.check_present(325            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),326            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Found a fail_message for rule 1 in 'spades', but destination is not 'fail'! Setting destination to 'fail'."),327            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')328        )329    @log_capture()330    def test_bad_rule_type(self, l):331        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest6, job_conf_path=job_conf_path, test=True), yt.ivDict)332        l.check_present(333            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),334            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Unrecognized rule_type 'iencs' found in 'spades'. Ignoring..."),335            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')336        )337    @log_capture()338    def test_no_err_msg(self, l):339        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest91, job_conf_path=job_conf_path, test=True), yt.iv91dict)340        l.check_present(341            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),342            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No nice_value found for rule 1 in 'spades'. Setting nice_value to 0."),343            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Missing a fail_message for rule 1 in 'spades'. Adding generic fail_message."),344            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')345        )346    @log_capture()347    def test_no_default_dest(self, l):348        dt.parse_yaml(path=yt.ivYMLTest7, job_conf_path=job_conf_path, test=True)349        l.check_present(350            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),351            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'No global default destination specified in config!'),352            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')353        )354    @log_capture()355    def test_invalid_category(self, l):356        dt.parse_yaml(path=yt.ivYMLTest8, job_conf_path=job_conf_path, test=True)357        l.check_present(358            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),359            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'No global default destination specified in config!'),360            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Unrecognized category 'ice_cream' found in config file!"),361            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')362        )363    @log_capture()364    def test_arguments_no_err_msg(self, l):365        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest12, job_conf_path=job_conf_path, test=True), yt.iv12dict)366        l.check_present(367            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),368            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG',369             "Missing a fail_message for rule 1 in 'spades'. Adding generic fail_message."),370            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')371        )372    @log_capture()373    def test_arguments_no_args(self, l):374        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest131, job_conf_path=job_conf_path, test=True), yt.iv131dict)375        l.check_present(376            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),377            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG',378             "No arguments found for rule 1 in 'spades' despite being of type arguments. Ignoring rule."),379            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')380        )381    @log_capture()382    def test_arguments_no_arg(self, l):383        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest132, job_conf_path=job_conf_path, test=True), yt.iv132dict)384        l.check_present(385            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),386            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Found a fail_message for rule 1 in 'spades', but destination is not 'fail'! Setting destination to 'fail'."),387            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')388        )389    @log_capture()390    def test_return_bool_for_multiple_jobs(self, l):391        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest133, job_conf_path=job_conf_path, test=True, return_bool=True))392        l.check_present(393            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Missing a fail_message for rule 1 in 'smalt'.")394        )395    @log_capture()396    def test_return_rule_for_multiple_jobs(self, l):397        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest133, job_conf_path=job_conf_path, test=True), yt.iv133dict)398        l.check_present(399            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),400            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Missing a fail_message for rule 1 in 'smalt'. Adding generic fail_message."),401            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')402        )403    @log_capture()404    def test_return_bool_for_no_destination(self, l):405        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest134, job_conf_path=job_conf_path, test=True, return_bool=True))406        l.check_present(407            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No destination specified for rule 1 in 'spades'.")408        )409    @log_capture()410    def test_return_rule_for_no_destination(self, l):411        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest134, job_conf_path=job_conf_path, test=True), yt.iv134dict)412        l.check_present(413            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),414            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No destination specified for rule 1 in 'spades'. Ignoring..."),415            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')416        )417    @log_capture()418    def test_return_rule_for_reversed_bounds(self, l):419        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest135, job_conf_path=job_conf_path, test=True), yt.iv135dict)420        l.check_present(421            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),422            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "lower_bound exceeds upper_bound for rule 1 in 'spades'. Reversing bounds."),423            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')424        )425    @log_capture()426    def test_return_bool_for_missing_tool_fields(self, l):427        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest136, job_conf_path=job_conf_path, test=True, return_bool=True))428        l.check_present(429            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Tool 'spades' does not have rules nor a default_destination!")430        )431    @log_capture()432    def test_return_rule_for_missing_tool_fields(self, l):433        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest136, job_conf_path=job_conf_path, test=True), yt.iv136dict)434        l.check_present(435            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),436            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Tool 'spades' does not have rules nor a default_destination!"),437            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')438        )439    @log_capture()440    def test_return_bool_for_blank_tool(self, l):441        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest137, job_conf_path=job_conf_path, test=True, return_bool=True))442        l.check_present(443            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Config section for tool 'spades' is blank!")444        )445    @log_capture()446    def test_return_rule_for_blank_tool(self, l):447        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest137, job_conf_path=job_conf_path, test=True), yt.iv137dict)448        l.check_present(449            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),450            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Config section for tool 'spades' is blank!"),451            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')452        )453    @log_capture()454    def test_return_bool_for_malformed_users(self, l):455        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest138, job_conf_path=job_conf_path, test=True, return_bool=True))456        l.check_present(457            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Entry '123' in users for rule 1 in tool 'spades' is in an invalid format!"),458            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Supplied email 'invaliduser.email@com' for rule 1 in tool 'spades' is in an invalid format!")459        )460    @log_capture()461    def test_return_rule_for_malformed_users(self, l):462        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest138, job_conf_path=job_conf_path, test=True), yt.iv138dict)463        l.check_present(464            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),465            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Entry '123' in users for rule 1 in tool 'spades' is in an invalid format! Ignoring entry."),466            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Supplied email 'invaliduser.email@com' for rule 1 in tool 'spades' is in an invalid format! Ignoring email."),467            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')468        )469    @log_capture()470    def test_return_bool_for_no_users(self, l):471        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest139, job_conf_path=job_conf_path, test=True, return_bool=True))472        l.check_present(473            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Couldn't find a list under 'users:'!")474        )475    @log_capture()476    def test_return_rule_for_no_users(self, l):477        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest139, job_conf_path=job_conf_path, test=True), yt.iv139dict)478        l.check_present(479            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),480            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Couldn't find a list under 'users:'! Ignoring rule."),481            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')482        )483    @log_capture()484    def test_return_bool_for_malformed_user_email(self, l):485        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest140, job_conf_path=job_conf_path, test=True, return_bool=True))486        l.check_present(487            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Supplied email 'invalid.user2@com' for rule 2 in tool 'spades' is in an invalid format!"),488            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Supplied email 'invalid.user1@com' for rule 2 in tool 'spades' is in an invalid format!"),489            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No valid user emails were specified for rule 2 in tool 'spades'!")490        )491    @log_capture()492    def test_return_rule_for_malformed_user_email(self, l):493        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest140, job_conf_path=job_conf_path, test=True), yt.iv140dict)494        l.check_present(495            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),496            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Supplied email 'invalid.user2@com' for rule 2 in tool 'spades' is in an invalid format! Ignoring email."),497            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Supplied email 'invalid.user1@com' for rule 2 in tool 'spades' is in an invalid format! Ignoring email."),498            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No valid user emails were specified for rule 2 in tool 'spades'! Ignoring rule."),499            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')500        )501    @log_capture()502    def test_return_bool_for_empty_users(self, l):503        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest141, job_conf_path=job_conf_path, test=True, return_bool=True))504        l.check_present(505            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Entry 'None' in users for rule 2 in tool 'spades' is in an invalid format!"),506            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Entry 'None' in users for rule 2 in tool 'spades' is in an invalid format!"),507            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No valid user emails were specified for rule 2 in tool 'spades'!")508        )509    @log_capture()510    def test_return_rule_for_empty_users(self, l):511        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest141, job_conf_path=job_conf_path, test=True), yt.iv141dict)512        l.check_present(513            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),514            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Entry 'None' in users for rule 2 in tool 'spades' is in an invalid format! Ignoring entry."),515            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Entry 'None' in users for rule 2 in tool 'spades' is in an invalid format! Ignoring entry."),516            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No valid user emails were specified for rule 2 in tool 'spades'! Ignoring rule."),517            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')518        )519    @log_capture()520    def test_return_bool_for_bad_num_input_datasets_bounds(self, l):521        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest142, job_conf_path=job_conf_path, test=True, return_bool=True))522        l.check_present(523            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Error: lower_bound is set to Infinity, but must be lower than upper_bound!"),524            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "lower_bound exceeds upper_bound for rule 1 in 'smalt'.")525        )526    @log_capture()527    def test_return_rule_for_bad_num_input_datasets_bound(self, l):528        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest142, job_conf_path=job_conf_path, test=True), yt.iv142dict)529        l.check_present(530            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),531            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Error: lower_bound is set to Infinity, but must be lower than upper_bound! Setting lower_bound to 0!"),532            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')533        )534    @log_capture()535    def test_return_bool_for_worse_num_input_datasets_bounds(self, l):536        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest143, job_conf_path=job_conf_path, test=True, return_bool=True))537        l.check_present(538            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Error: lower_bound is set to Infinity, but must be lower than upper_bound!")539        )540    @log_capture()541    def test_return_rule_for_worse_num_input_datasets_bound(self, l):542        self.assertEqual(dt.parse_yaml(path=yt.ivYMLTest143, job_conf_path=job_conf_path, test=True), yt.iv143dict)543        l.check_present(544            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),545            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Error: lower_bound is set to Infinity, but must be lower than upper_bound! Setting lower_bound to 0!"),546            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')547        )548    @log_capture()549    def test_tool_without_low_default_destination(self, l):550        dt.parse_yaml(path=yt.ivYMLTest146, job_conf_path=job_conf_path, test=True)551        l.check_present(552            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),553            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),554            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Invalid priority 'low' for rule 1 in 'smalt'. Ignoring..."),555            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')556        )557    @log_capture()558    def test_tool_with_invalid_priority_destination(self, l):559        dt.parse_yaml(path=yt.ivYMLTest147, job_conf_path=job_conf_path, test=True)560        l.check_present(561            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),562            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),563            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Invalid priority 'mine' for rule 1 in 'smalt'. Ignoring..."),564            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')565        )566    @log_capture()567    def test_not_all_priorities_in_tool(self, l):568        dt.parse_yaml(path=yt.ivYMLTest149, job_conf_path=job_conf_path, test=True)569        l.check_present(570            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),571            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),572            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')573        )574    @log_capture()575    def test_rule_destination_not_in_job_conf(self, l):576        dt.parse_yaml(path=yt.ivYMLTest150, job_conf_path=job_conf_path, test=True)577        l.check_present(578            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),579            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),580            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Destination for 'blegh', rule 1: 'fake_destination' does not exist in job configuration. Ignoring..."),581            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')582        )583    @log_capture()584    def test_tool_default_destination_not_in_job_conf_with_no_rules(self, l):585        dt.parse_yaml(path=yt.ivYMLTest151, job_conf_path=job_conf_path, test=True)586        l.check_present(587            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),588            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),589            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination for 'blah': 'not_true_destination' does not appear in the job configuration."),590            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Tool 'blah' does not have rules nor a default_destination!"),591            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')592        )593    @log_capture()594    def test_default_destination_not_in_job_conf(self, l):595        dt.parse_yaml(path=yt.ivYMLTest152, job_conf_path=job_conf_path, test=True)596        l.check_present(597            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),598            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination 'no_such_dest' does not appear in the job configuration."),599            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),600            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')601        )602    @log_capture()603    def test_rule_destination_without_priority_not_in_job_conf(self, l):604        dt.parse_yaml(path=yt.ivYMLTest153, job_conf_path=job_conf_path, test=True)605        l.check_present(606            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),607            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),608            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Destination for 'blegh', rule 1: 'fake_destination' does not exist in job configuration. Ignoring..."),609            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')610        )611    @log_capture()612    def test_tool_default_destination_without_priority_not_in_job_conf_with_no_rules(self, l):613        dt.parse_yaml(path=yt.ivYMLTest154, job_conf_path=job_conf_path, test=True)614        l.check_present(615            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),616            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),617            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination for 'blah': 'not_true_destination' does not appear in the job configuration."),618            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Tool 'blah' does not have rules nor a default_destination!"),619            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')620        )621    @log_capture()622    def test_default_destination_without_priority_not_in_job_conf(self, l):623        dt.parse_yaml(path=yt.ivYMLTest155, job_conf_path=job_conf_path, test=True)624        l.check_present(625            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),626            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination 'no_such_dest' does not appear in the job configuration."),627            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')628        )629    @log_capture()630    def test_tool_rule_priority_does_not_exist(self, l):631        dt.parse_yaml(path=yt.ivYMLTest156, job_conf_path=job_conf_path, test=True)632        l.check_present(633            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),634            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),635            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Invalid priority 'notAPriority' for rule 1 in 'aTool'. Ignoring..."),636            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')637        )638    @log_capture()639    def test_tool_default_destination_priority_does_not_exist(self, l):640        dt.parse_yaml(path=yt.ivYMLTest157, job_conf_path=job_conf_path, test=True)641        l.check_present(642            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),643            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),644            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Invalid default destination priority 'notAPriority' for 'aTool'."),645            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')646        )647    @log_capture()648    def test_tool_default_destination_not_in_job_conf(self, l):649        dt.parse_yaml(path=yt.ivYMLTest158, job_conf_path=job_conf_path, test=True)650        l.check_present(651            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),652            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),653            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination for 'blah': 'not_true_destination' does not appear in the job configuration."),654            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')655        )656    @log_capture()657    def test_tool_default_destination_without_priority_not_in_job_conf(self, l):658        dt.parse_yaml(path=yt.ivYMLTest159, job_conf_path=job_conf_path, test=True)659        l.check_present(660            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),661            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination for 'blah': 'not_true_destination' does not appear in the job configuration."),662            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')663        )664    @log_capture()665    def test_empty_priority_dict(self, l):666        dt.parse_yaml(path=yt.ivYMLTest163, job_conf_path=job_conf_path, test=True)667        l.check_present(668            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),669            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No global default destinations specified in config!"),670            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')671        )672    @log_capture()673    def test_default_dest_is_string_but_priorities_used_in_rule(self, l):674        dt.parse_yaml(path=yt.ivYMLTest161, job_conf_path=job_conf_path, test=True)675        l.check_present(676            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),677            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Invalid priority 'med' for rule 1 in 'blah'. Ignoring..."),678            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')679        )680    @log_capture()681    def test_default_dest_is_string_but_priorities_used_in_tool_default_dest(self, l):682        dt.parse_yaml(path=yt.ivYMLTest162, job_conf_path=job_conf_path, test=True)683        l.check_present(684            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),685            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Invalid default destination priority 'med' for 'blah'."),686            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')687        )688    @log_capture()689    def test_typo_in_str_default_dest(self, l):690        dt.parse_yaml(path=yt.ivYMLTest164, job_conf_path=job_conf_path, test=True)691        l.check_present(692            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),693            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination 'cluster-kow' does not appear in the job configuration. Did you mean 'cluster_low'?"),694            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')695        )696    @log_capture()697    def test_typo_in_dict_default_dest(self, l):698        dt.parse_yaml(path=yt.ivYMLTest165, job_conf_path=job_conf_path, test=True)699        l.check_present(700            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),701            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination 'cluster_kow' does not appear in the job configuration. Did you mean 'cluster_low'?"),702            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')703        )704    @log_capture()705    def test_typo_in_dict_tool_default_dest(self, l):706        dt.parse_yaml(path=yt.ivYMLTest166, job_conf_path=job_conf_path, test=True)707        l.check_present(708            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),709            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination for 'blah': 'cluster_defaut' does not appear in the job configuration. Did you mean 'cluster_default'?"),710            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')711        )712    @log_capture()713    def test_typo_in_str_tool_default_dest(self, l):714        dt.parse_yaml(path=yt.ivYMLTest167, job_conf_path=job_conf_path, test=True)715        l.check_present(716            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),717            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination for 'blah': 'Destination_3_med' does not appear in the job configuration. Did you mean 'Destination3_med'?"),718            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')719        )720    @log_capture()721    def test_typo_in_str_tool_rule_dest(self, l):722        dt.parse_yaml(path=yt.ivYMLTest168, job_conf_path=job_conf_path, test=True)723        l.check_present(724            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),725            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Destination for 'blah', rule 1: 'thig' does not exist in job configuration. Did you mean 'things'? Ignoring..."),726            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')727        )728    @log_capture()729    def test_typo_in_dict_tool_rule_dest(self, l):730        dt.parse_yaml(path=yt.ivYMLTest169, job_conf_path=job_conf_path, test=True)731        l.check_present(732            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),733            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Destination for 'blah', rule 1: 'even_lamerr_cluster' does not exist in job configuration. Did you mean 'even_lamer_cluster'? Ignoring..."),734            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')735        )736    @log_capture()737    def test_typo_in_case(self, l):738        dt.parse_yaml(path=yt.ivYMLTest170, job_conf_path=job_conf_path, test=True)739        l.check_present(740            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),741            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination 'destinationf' does not appear in the job configuration. Did you mean 'DestinationF'?"),742            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')743        )744    @log_capture()745    def test_invalid_verbose_value(self, l):746        dt.parse_yaml(path=yt.ivYMLTest171, job_conf_path=job_conf_path, test=True)747        l.check_present(748            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Verbose value 'notavalue' is not True or False! Falling back to verbose..."),749            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),750            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.')751        )752    @log_capture()753    def test_invalid_default_dest_valid_tool_default_dest_bool(self, l):754        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest172, job_conf_path=job_conf_path, test=True, return_bool=True))755        l.check_present(756            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination 'fake_destination' does not appear in the job configuration."),757        )758    @log_capture()759    def test_valid_default_dest_invalid_tool_default_dest_bool(self, l):760        self.assertFalse(dt.parse_yaml(path=yt.ivYMLTest173, job_conf_path=job_conf_path, test=True, return_bool=True))761        l.check_present(762            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Default destination for 'blah': 'fake_destination' does not appear in the job configuration."),763            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "Tool 'blah' does not have rules nor a default_destination!"),764        )765# ================================Valid yaml files==============================766    @log_capture()767    def test_parse_valid_yml(self, l):768        self.assertEqual(dt.parse_yaml(yt.vYMLTest1, job_conf_path=job_conf_path, test=True), yt.vdictTest1_yml)769        self.assertEqual(dt.parse_yaml(yt.vYMLTest2, job_conf_path=job_conf_path, test=True), yt.vdictTest2_yml)770        self.assertEqual(dt.parse_yaml(yt.vYMLTest3, job_conf_path=job_conf_path, test=True), yt.vdictTest3_yml)771        self.assertTrue(dt.parse_yaml(yt.vYMLTest4, job_conf_path=job_conf_path, test=True, return_bool=True))772        self.assertEqual(dt.parse_yaml(yt.vYMLTest4, job_conf_path=job_conf_path, test=True), yt.vdictTest4_yml)773        self.assertTrue(dt.parse_yaml(yt.vYMLTest5, job_conf_path=job_conf_path, test=True, return_bool=True))774        self.assertEqual(dt.parse_yaml(yt.vYMLTest5, job_conf_path=job_conf_path, test=True), yt.vdictTest5_yml)775        self.assertTrue(dt.parse_yaml(yt.vYMLTest6, job_conf_path=job_conf_path, test=True, return_bool=True))776        self.assertEqual(dt.parse_yaml(yt.vYMLTest6, job_conf_path=job_conf_path, test=True), yt.vdictTest6_yml)777        self.assertTrue(dt.parse_yaml(yt.vYMLTest7, job_conf_path=job_conf_path, test=True, return_bool=True))778        self.assertEqual(dt.parse_yaml(yt.vYMLTest7, job_conf_path=job_conf_path, test=True), yt.vdictTest7_yml)779        self.assertTrue(dt.parse_yaml(yt.vYMLTest160, job_conf_path=job_conf_path, test=True, return_bool=True))780        self.assertEqual(dt.parse_yaml(yt.vYMLTest160, job_conf_path=job_conf_path, test=True), yt.vdictTest160_yml)781        self.assertTrue(dt.parse_yaml(yt.vYMLTest164, job_conf_path=job_conf_path, test=True, return_bool=True))782        self.assertEqual(dt.parse_yaml(yt.vYMLTest164, job_conf_path=job_conf_path, test=True), yt.vdictTest164_yml)783        l.check_present(784            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),785            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),786            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),787            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),788            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),789            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),790            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),791            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),792            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),793            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),794            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),795            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Finished config validation.'),796            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', "No default_priority section found in config. Setting 'med' as default priority."),797            ('galaxy.jobs.dynamic_tool_destination', 'DEBUG', 'Running config validation...'),...
Automation Testing Tutorials

Learn to execute automation testing from scratch with LambdaTest Learning Hub. Right from setting up the prerequisites to run your first automation test, to following best practices and diving deeper into advanced test scenarios. LambdaTest Learning Hubs compile a list of step-by-step guides to help you be proficient with different test automation frameworks i.e. Selenium, Cypress, TestNG etc.