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How to use add_parameter method in Slash
Best Python code snippet using slash
inttype.py
Source:inttype.py 
...9 DIRECTIONS = [Parameter.DIRECTION_IN]10 CTYPES = ['int', 'int32_t']11 def convert_c_to_python(self, wrapper):12 assert isinstance(wrapper, ReverseWrapperBase)13 wrapper.build_params.add_parameter('i', [self.value])14 def convert_python_to_c(self, wrapper):15 assert isinstance(wrapper, ForwardWrapperBase)16 name = wrapper.declarations.declare_variable(self.ctype_no_const, self.name, self.default_value)17 wrapper.parse_params.add_parameter('i', ['&'+name], self.name, optional=bool(self.default_value))18 wrapper.call_params.append(name)19class UnsignedIntParam(Parameter):20 DIRECTIONS = [Parameter.DIRECTION_IN]21 CTYPES = ['unsigned int', 'uint32_t']22 def convert_c_to_python(self, wrapper):23 assert isinstance(wrapper, ReverseWrapperBase)24 wrapper.build_params.add_parameter('N', ["PyLong_FromUnsignedLong(%s)" % self.value])25 def convert_python_to_c(self, wrapper):26 assert isinstance(wrapper, ForwardWrapperBase)27 name = wrapper.declarations.declare_variable('unsigned int', self.name, self.default_value)28 wrapper.parse_params.add_parameter('I', ['&'+name], self.name, optional=bool(self.default_value))29 wrapper.call_params.append(name)30class UnsignedIntPtrParam(PointerParameter):31 DIRECTIONS = [Parameter.DIRECTION_IN, Parameter.DIRECTION_OUT, Parameter.DIRECTION_INOUT]32 CTYPES = ['unsigned int*', 'uint32_t*']33 def __init__(self, ctype, name, direction=Parameter.DIRECTION_IN, is_const=False,34 default_value=None, transfer_ownership=False, array_length=None):35 super(UnsignedIntPtrParam, self).__init__(ctype, name, direction, is_const, default_value, transfer_ownership)36 self.array_length = array_length37 if transfer_ownership:38 raise NotSupportedError("%s: transfer_ownership=True not yet implemented." % ctype)39 def convert_c_to_python(self, wrapper):40 if self.direction & self.DIRECTION_IN:41 wrapper.build_params.add_parameter('I', ['*'+self.value])42 if self.direction & self.DIRECTION_OUT:43 wrapper.parse_params.add_parameter('I', [self.value], self.name)44 def convert_python_to_c(self, wrapper):45 #assert self.ctype == 'unsigned int*'46 if self.array_length is None:47 name = wrapper.declarations.declare_variable(str(self.type_traits.target), self.name)48 wrapper.call_params.append('&'+name)49 if self.direction & self.DIRECTION_IN:50 wrapper.parse_params.add_parameter('I', ['&'+name], self.name)51 if self.direction & self.DIRECTION_OUT:52 wrapper.build_params.add_parameter('I', [name])53 else: # complicated code path to deal with arrays...54 name = wrapper.declarations.declare_variable(str(self.type_traits.target), self.name, array="[%i]" % self.array_length)55 py_list = wrapper.declarations.declare_variable("PyObject*", "py_list")56 idx = wrapper.declarations.declare_variable("int", "idx")57 wrapper.call_params.append(name)58 if self.direction & self.DIRECTION_IN:59 elem = wrapper.declarations.declare_variable("PyObject*", "element")60 wrapper.parse_params.add_parameter('O!', ['&PyList_Type', '&'+py_list], self.name)61 wrapper.before_call.write_error_check(62 'PyList_Size(%s) != %i' % (py_list, self.array_length),63 'PyErr_SetString(PyExc_TypeError, "Parameter `%s\' must be a list of %i ints/longs");'64 % (self.name, self.array_length))65 wrapper.before_call.write_code(66 "for (%s = 0; %s < %i; %s++) {" % (idx, idx, self.array_length, idx))67 wrapper.before_call.indent()68 wrapper.before_call.write_code("%(elem)s = PyList_GET_ITEM(%(py_list)s, %(idx)s);" % vars())69 wrapper.before_call.write_error_check(70 '!(PyInt_Check(%(elem)s) || PyLong_Check(%(elem)s))',71 'PyErr_SetString(PyExc_TypeError, "Parameter `%s\' must be a list of %i ints / longs");'72 % (self.name, self.array_length))73 wrapper.before_call.write_code("%(name)s[%(idx)s] = PyLong_AsUnsignedInt(%(elem)s);" % vars())74 wrapper.before_call.unindent()75 wrapper.before_call.write_code('}')76 if self.direction & self.DIRECTION_OUT:77 wrapper.after_call.write_code("%s = PyList_New(%i);" % (py_list, self.array_length))78 wrapper.after_call.write_code(79 "for (%s = 0; %s < %i; %s++) {" % (idx, idx, self.array_length, idx))80 wrapper.after_call.indent()81 wrapper.after_call.write_code("PyList_SET_ITEM(%(py_list)s, %(idx)s, PyLong_FromUnsignedLong(%(name)s[%(idx)s]));"82 % vars())83 wrapper.after_call.unindent()84 wrapper.after_call.write_code('}')85 wrapper.build_params.add_parameter("N", [py_list])86class IntReturn(ReturnValue):87 CTYPES = ['int', 'int32_t']88 def get_c_error_return(self):89 return "return INT_MIN;"90 91 def convert_python_to_c(self, wrapper):92 wrapper.parse_params.add_parameter("i", ["&"+self.value], prepend=True)93 def convert_c_to_python(self, wrapper):94 wrapper.build_params.add_parameter("i", [self.value], prepend=True)95class UnsignedIntReturn(ReturnValue):96 CTYPES = ['unsigned int', 'uint32_t']97 def get_c_error_return(self):98 return "return 0;"99 100 def convert_python_to_c(self, wrapper):101 wrapper.parse_params.add_parameter("I", ["&"+self.value], prepend=True)102 def convert_c_to_python(self, wrapper):103 wrapper.build_params.add_parameter('N', ["PyLong_FromUnsignedLong(%s)" % self.value], prepend=True)104class IntPtrParam(PointerParameter):105 DIRECTIONS = [Parameter.DIRECTION_IN, Parameter.DIRECTION_OUT,106 Parameter.DIRECTION_IN|Parameter.DIRECTION_OUT]107 CTYPES = ['int*']108 def __init__(self, ctype, name, direction=None, is_const=None, transfer_ownership=None):109 if direction is None:110 if is_const:111 direction = Parameter.DIRECTION_IN112 else:113 raise TypeConfigurationError("direction not given")114 115 super(IntPtrParam, self).__init__(ctype, name, direction, is_const, transfer_ownership)116 117 def convert_c_to_python(self, wrapper):118 if self.direction & self.DIRECTION_IN:119 wrapper.build_params.add_parameter('i', ['*'+self.value])120 if self.direction & self.DIRECTION_OUT:121 wrapper.parse_params.add_parameter("i", [self.value], self.name)122 def convert_python_to_c(self, wrapper):123 name = wrapper.declarations.declare_variable(self.ctype_no_const[:-1], self.name)124 wrapper.call_params.append('&'+name)125 if self.direction & self.DIRECTION_IN:126 wrapper.parse_params.add_parameter('i', ['&'+name], self.name)127 if self.direction & self.DIRECTION_OUT:128 wrapper.build_params.add_parameter("i", [name])129 130class IntRefParam(Parameter):131 DIRECTIONS = [Parameter.DIRECTION_IN, Parameter.DIRECTION_OUT,132 Parameter.DIRECTION_IN|Parameter.DIRECTION_OUT]133 CTYPES = ['int&']134 135 def convert_c_to_python(self, wrapper):136 if self.direction & self.DIRECTION_IN:137 wrapper.build_params.add_parameter('i', [self.value])138 if self.direction & self.DIRECTION_OUT:139 wrapper.parse_params.add_parameter("i", [self.value], self.name)140 def convert_python_to_c(self, wrapper):141 #assert self.ctype == 'int&'142 name = wrapper.declarations.declare_variable(self.ctype_no_const[:-1], self.name)143 wrapper.call_params.append(name)144 if self.direction & self.DIRECTION_IN:145 wrapper.parse_params.add_parameter('i', ['&'+name], self.name)146 if self.direction & self.DIRECTION_OUT:147 wrapper.build_params.add_parameter("i", [name])148class UnsignedIntRefParam(Parameter):149 DIRECTIONS = [Parameter.DIRECTION_IN, Parameter.DIRECTION_OUT,150 Parameter.DIRECTION_IN|Parameter.DIRECTION_OUT]151 CTYPES = ['unsigned int&', 'unsigned &']152 153 def convert_c_to_python(self, wrapper):154 if self.direction & self.DIRECTION_IN:155 wrapper.build_params.add_parameter('I', [self.value])156 if self.direction & self.DIRECTION_OUT:157 wrapper.parse_params.add_parameter("I", [self.value], self.name)158 def convert_python_to_c(self, wrapper):159 #assert self.ctype == 'int&'160 name = wrapper.declarations.declare_variable(self.ctype_no_const[:-1], self.name)161 wrapper.call_params.append(name)162 if self.direction & self.DIRECTION_IN:163 wrapper.parse_params.add_parameter('I', ['&'+name], self.name)164 if self.direction & self.DIRECTION_OUT:165 wrapper.build_params.add_parameter("I", [name])166class UInt16Return(ReturnValue):167 CTYPES = ['uint16_t', 'unsigned short', 'unsigned short int', 'short unsigned int']168 def get_c_error_return(self):169 return "return 0;"170 171 def convert_python_to_c(self, wrapper):172 tmp_var = wrapper.declarations.declare_variable("int", "tmp")173 wrapper.parse_params.add_parameter("i", ["&"+tmp_var], prepend=True)174 wrapper.after_call.write_error_check('%s > 0xffff' % tmp_var,175 'PyErr_SetString(PyExc_ValueError, "Out of range");')176 wrapper.after_call.write_code(177 "%s = %s;" % (self.value, tmp_var))178 def convert_c_to_python(self, wrapper):179 wrapper.build_params.add_parameter("i", [self.value], prepend=True)180class Int16Return(ReturnValue):181 CTYPES = ['int16_t', 'short', 'short int']182 def get_c_error_return(self):183 return "return 0;"184 185 def convert_python_to_c(self, wrapper):186 tmp_var = wrapper.declarations.declare_variable("int", "tmp")187 wrapper.parse_params.add_parameter("i", ["&"+tmp_var], prepend=True)188 wrapper.after_call.write_error_check('%s > 32767 || %s < -32768' % (tmp_var, tmp_var),189 'PyErr_SetString(PyExc_ValueError, "Out of range");')190 wrapper.after_call.write_code(191 "%s = %s;" % (self.value, tmp_var))192 def convert_c_to_python(self, wrapper):193 wrapper.build_params.add_parameter("i", [self.value], prepend=True)194class UInt16Param(Parameter):195 DIRECTIONS = [Parameter.DIRECTION_IN]196 CTYPES = ['uint16_t', 'unsigned short', 'unsigned short int']197 def convert_c_to_python(self, wrapper):198 assert isinstance(wrapper, ReverseWrapperBase)199 wrapper.build_params.add_parameter('i', ["(int) "+self.value])200 def convert_python_to_c(self, wrapper):201 assert isinstance(wrapper, ForwardWrapperBase)202 name = wrapper.declarations.declare_variable("int", self.name, self.default_value)203 wrapper.parse_params.add_parameter('i', ['&'+name], self.name, optional=bool(self.default_value))204 wrapper.before_call.write_error_check('%s > 0xffff' % name,205 'PyErr_SetString(PyExc_ValueError, "Out of range");')206 wrapper.call_params.append(name)207class UInt16RefParam(Parameter):208 DIRECTIONS = [Parameter.DIRECTION_IN, Parameter.DIRECTION_INOUT, Parameter.DIRECTION_OUT]209 CTYPES = ['uint16_t&', 'unsigned short&', 'unsigned short int&', 'short unsigned&', 'short unsigned int&']210 def convert_c_to_python(self, wrapper):211 assert isinstance(wrapper, ReverseWrapperBase)212 if self.direction & self.DIRECTION_IN:213 wrapper.build_params.add_parameter('H', [self.value])214 if self.direction & self.DIRECTION_OUT:215 wrapper.parse_params.add_parameter("H", [self.value], self.name)216 def convert_python_to_c(self, wrapper):217 name = wrapper.declarations.declare_variable(self.ctype_no_const[:-1], self.name)218 wrapper.call_params.append(name)219 if self.direction & self.DIRECTION_IN:220 wrapper.parse_params.add_parameter('H', ['&'+name], self.name)221 if self.direction & self.DIRECTION_OUT:222 wrapper.build_params.add_parameter("H", [name])223class Int16Param(Parameter):224 DIRECTIONS = [Parameter.DIRECTION_IN]225 CTYPES = ['int16_t', 'short', 'short int']226 def convert_c_to_python(self, wrapper):227 assert isinstance(wrapper, ReverseWrapperBase)228 wrapper.build_params.add_parameter('i', ["(int) "+self.value])229 def convert_python_to_c(self, wrapper):230 assert isinstance(wrapper, ForwardWrapperBase)231 name = wrapper.declarations.declare_variable("int", self.name, self.default_value)232 wrapper.parse_params.add_parameter('i', ['&'+name], self.name, optional=bool(self.default_value))233 wrapper.before_call.write_error_check('%s > 0x7fff' % name,234 'PyErr_SetString(PyExc_ValueError, "Out of range");')235 wrapper.call_params.append(name)236class Int16RefParam(Parameter):237 DIRECTIONS = [Parameter.DIRECTION_IN, Parameter.DIRECTION_INOUT, Parameter.DIRECTION_OUT]238 CTYPES = ['int16_t&', 'short&', 'short int&']239 def convert_c_to_python(self, wrapper):240 assert isinstance(wrapper, ReverseWrapperBase)241 if self.direction & self.DIRECTION_IN:242 wrapper.build_params.add_parameter('h', [self.value])243 if self.direction & self.DIRECTION_OUT:244 wrapper.parse_params.add_parameter("h", [self.value], self.name)245 def convert_python_to_c(self, wrapper):246 name = wrapper.declarations.declare_variable(self.ctype_no_const[:-1], self.name)247 wrapper.call_params.append(name)248 if self.direction & self.DIRECTION_IN:249 wrapper.parse_params.add_parameter('h', ['&'+name], self.name)250 if self.direction & self.DIRECTION_OUT:251 wrapper.build_params.add_parameter("h", [name])252class UInt8Param(Parameter):253 DIRECTIONS = [Parameter.DIRECTION_IN]254 CTYPES = ['uint8_t', 'unsigned char', 'char unsigned']255 def convert_c_to_python(self, wrapper):256 assert isinstance(wrapper, ReverseWrapperBase)257 wrapper.build_params.add_parameter('i', ["(int) "+self.value])258 def convert_python_to_c(self, wrapper):259 assert isinstance(wrapper, ForwardWrapperBase)260 name = wrapper.declarations.declare_variable("int", self.name, self.default_value)261 wrapper.parse_params.add_parameter('i', ['&'+name], self.name, optional=bool(self.default_value))262 wrapper.before_call.write_error_check('%s > 0xff' % name,263 'PyErr_SetString(PyExc_ValueError, "Out of range");')264 wrapper.call_params.append(name)265class UInt8RefParam(Parameter):266 DIRECTIONS = [Parameter.DIRECTION_IN, Parameter.DIRECTION_INOUT, Parameter.DIRECTION_OUT]267 CTYPES = ['uint8_t&', 'unsigned char&', 'char unsigned&']268 def convert_c_to_python(self, wrapper):269 assert isinstance(wrapper, ReverseWrapperBase)270 if self.direction & self.DIRECTION_IN:271 wrapper.build_params.add_parameter('B', [self.value])272 if self.direction & self.DIRECTION_OUT:273 wrapper.parse_params.add_parameter("B", [self.value], self.name)274 def convert_python_to_c(self, wrapper):275 name = wrapper.declarations.declare_variable(self.ctype_no_const[:-1], self.name)276 wrapper.call_params.append(name)277 if self.direction & self.DIRECTION_IN:278 wrapper.parse_params.add_parameter('B', ['&'+name], self.name)279 if self.direction & self.DIRECTION_OUT:280 wrapper.build_params.add_parameter("B", [name])281class UInt8Return(ReturnValue):282 CTYPES = ['uint8_t', 'unsigned char', 'char unsigned']283 def get_c_error_return(self):284 return "return 0;"285 286 def convert_python_to_c(self, wrapper):287 tmp_var = wrapper.declarations.declare_variable("int", "tmp")288 wrapper.parse_params.add_parameter("i", ["&"+tmp_var], prepend=True)289 wrapper.after_call.write_error_check('%s > 0xff' % tmp_var,290 'PyErr_SetString(PyExc_ValueError, "Out of range");')291 wrapper.after_call.write_code(292 "%s = %s;" % (self.value, tmp_var))293 def convert_c_to_python(self, wrapper):294 wrapper.build_params.add_parameter("i", ['(int)' + self.value], prepend=True)295class Int8Param(Parameter):296 DIRECTIONS = [Parameter.DIRECTION_IN]297 CTYPES = ['int8_t', 'signed char', 'char signed']298 def convert_c_to_python(self, wrapper):299 assert isinstance(wrapper, ReverseWrapperBase)300 wrapper.build_params.add_parameter('i', ["(int) "+self.value])301 def convert_python_to_c(self, wrapper):302 assert isinstance(wrapper, ForwardWrapperBase)303 name = wrapper.declarations.declare_variable("int", self.name, self.default_value)304 wrapper.parse_params.add_parameter('i', ['&'+name], self.name, optional=bool(self.default_value))305 wrapper.before_call.write_error_check('%s > 0x7f' % name,306 'PyErr_SetString(PyExc_ValueError, "Out of range");')307 wrapper.call_params.append(name)308class Int8RefParam(Parameter):309 DIRECTIONS = [Parameter.DIRECTION_IN, Parameter.DIRECTION_INOUT, Parameter.DIRECTION_OUT]310 CTYPES = ['int8_t&', 'signed char &', 'char signed&']311 def convert_c_to_python(self, wrapper):312 assert isinstance(wrapper, ReverseWrapperBase)313 if self.direction & self.DIRECTION_IN:314 wrapper.build_params.add_parameter('b', [self.value])315 if self.direction & self.DIRECTION_OUT:316 wrapper.parse_params.add_parameter("b", [self.value], self.name)317 def convert_python_to_c(self, wrapper):318 name = wrapper.declarations.declare_variable(self.ctype_no_const[:-1], self.name)319 wrapper.call_params.append(name)320 if self.direction & self.DIRECTION_IN:321 wrapper.parse_params.add_parameter('b', ['&'+name], self.name)322 if self.direction & self.DIRECTION_OUT:323 wrapper.build_params.add_parameter("b", [name])324class Int8Return(ReturnValue):325 CTYPES = ['int8_t', 'signed char']326 def get_c_error_return(self):327 return "return 0;"328 329 def convert_python_to_c(self, wrapper):330 tmp_var = wrapper.declarations.declare_variable("int", "tmp")331 wrapper.parse_params.add_parameter("i", ["&"+tmp_var], prepend=True)332 wrapper.after_call.write_error_check('%s > 128 || %s < -127' % (tmp_var, tmp_var),333 'PyErr_SetString(PyExc_ValueError, "Out of range");')334 wrapper.after_call.write_code(335 "%s = %s;" % (self.value, tmp_var))336 def convert_c_to_python(self, wrapper):337 wrapper.build_params.add_parameter("i", [self.value], prepend=True)338class UnsignedLongLongParam(Parameter):339 DIRECTIONS = [Parameter.DIRECTION_IN]340 CTYPES = ['unsigned long long', 'uint64_t', 'unsigned long long int', 'long long unsigned int', 'long long unsigned']341 def get_ctype_without_ref(self):342 return str(self.type_traits.ctype_no_const)343 def convert_c_to_python(self, wrapper):344 assert isinstance(wrapper, ReverseWrapperBase)345 wrapper.build_params.add_parameter('K', [self.value])346 def convert_python_to_c(self, wrapper):347 assert isinstance(wrapper, ForwardWrapperBase)348 name = wrapper.declarations.declare_variable(self.get_ctype_without_ref(), self.name, self.default_value)349 wrapper.parse_params.add_parameter('K', ['&'+name], self.name, optional=bool(self.default_value))350 wrapper.call_params.append(name)351class UnsignedLongLongRefParam(UnsignedLongLongParam):352 DIRECTIONS = [Parameter.DIRECTION_IN]353 CTYPES = ['unsigned long long&', 'uint64_t&', 'long long unsigned int&']354 def get_ctype_without_ref(self):355 assert self.type_traits.target is not None356 return str(self.type_traits.target)357class UnsignedLongLongReturn(ReturnValue):358 CTYPES = ['unsigned long long', 'uint64_t', 'long long unsigned int']359 def get_c_error_return(self):360 return "return 0;"361 362 def convert_python_to_c(self, wrapper):363 wrapper.parse_params.add_parameter("K", ["&"+self.value], prepend=True)364 def convert_c_to_python(self, wrapper):365 wrapper.build_params.add_parameter("K", [self.value], prepend=True)366class UnsignedLongParam(Parameter):367 DIRECTIONS = [Parameter.DIRECTION_IN]368 CTYPES = ['unsigned long', 'unsigned long int', 'long unsigned', 'long unsigned int']369 def get_ctype_without_ref(self):370 return str(self.type_traits.ctype_no_const)371 def convert_c_to_python(self, wrapper):372 assert isinstance(wrapper, ReverseWrapperBase)373 wrapper.build_params.add_parameter('k', [self.value])374 def convert_python_to_c(self, wrapper):375 assert isinstance(wrapper, ForwardWrapperBase)376 name = wrapper.declarations.declare_variable(self.get_ctype_without_ref(), self.name, self.default_value)377 wrapper.parse_params.add_parameter('k', ['&'+name], self.name, optional=bool(self.default_value))378 wrapper.call_params.append(name)379class UnsignedLongRefParam(UnsignedLongParam):380 DIRECTIONS = [Parameter.DIRECTION_IN]381 CTYPES = ['unsigned long&', 'long unsigned&', 'long unsigned int&', 'unsigned long int&']382 def get_ctype_without_ref(self):383 assert self.type_traits.target is not None384 return str(self.type_traits.target)385class UnsignedLongReturn(ReturnValue):386 CTYPES = ['unsigned long', 'long unsigned int']387 def get_c_error_return(self):388 return "return 0;"389 390 def convert_python_to_c(self, wrapper):391 wrapper.parse_params.add_parameter("k", ["&"+self.value], prepend=True)392 def convert_c_to_python(self, wrapper):393 wrapper.build_params.add_parameter("k", [self.value], prepend=True)394class LongParam(Parameter):395 DIRECTIONS = [Parameter.DIRECTION_IN]396 CTYPES = ['signed long', 'signed long int', 'long', 'long int', 'long signed', 'long signed int']397 def get_ctype_without_ref(self):398 return str(self.type_traits.ctype_no_const)399 def convert_c_to_python(self, wrapper):400 assert isinstance(wrapper, ReverseWrapperBase)401 wrapper.build_params.add_parameter('l', [self.value])402 def convert_python_to_c(self, wrapper):403 assert isinstance(wrapper, ForwardWrapperBase)404 name = wrapper.declarations.declare_variable(self.get_ctype_without_ref(), self.name, self.default_value)405 wrapper.parse_params.add_parameter('l', ['&'+name], self.name, optional=bool(self.default_value))406 wrapper.call_params.append(name)407class LongRefParam(LongParam):408 DIRECTIONS = [Parameter.DIRECTION_IN]409 CTYPES = ['signed long&', 'long signed&', 'long&', 'long int&', 'long signed int&', 'signed long int&']410 def get_ctype_without_ref(self):411 assert self.type_traits.target is not None412 return str(self.type_traits.target)413class LongReturn(ReturnValue):414 CTYPES = ['signed long', 'long signed int', 'long', 'long int']415 def get_c_error_return(self):416 return "return 0;"417 418 def convert_python_to_c(self, wrapper):419 wrapper.parse_params.add_parameter("l", ["&"+self.value], prepend=True)420 def convert_c_to_python(self, wrapper):421 wrapper.build_params.add_parameter("l", [self.value], prepend=True)422class SizeTReturn(ReturnValue):423 CTYPES = ['size_t',]424 def get_c_error_return(self):425 return "return 0;"426 427 def convert_python_to_c(self, wrapper):428 # using the intermediate variable is not always necessary but429 # it's safer this way in case of weird platforms where430 # sizeof(size_t) != sizeof(unsigned PY_LONG_LONG).431 name = wrapper.declarations.declare_variable("unsigned PY_LONG_LONG", "retval_tmp", self.value)432 wrapper.parse_params.add_parameter("K", ["&"+name], prepend=True)433 wrapper.after_call.write_code("retval = %s;" % (name))434 def convert_c_to_python(self, wrapper):435 wrapper.build_params.add_parameter("K", ["((unsigned PY_LONG_LONG) %s)" % self.value], prepend=True)436class SizeTParam(Parameter):437 DIRECTIONS = [Parameter.DIRECTION_IN]438 CTYPES = ['size_t']439 def get_ctype_without_ref(self):440 return str(self.type_traits.ctype_no_const)441 def convert_c_to_python(self, wrapper):442 assert isinstance(wrapper, ReverseWrapperBase)443 wrapper.build_params.add_parameter('K', ["((unsigned PY_LONG_LONG) %s)" % self.value])444 def convert_python_to_c(self, wrapper):445 assert isinstance(wrapper, ForwardWrapperBase)446 name = wrapper.declarations.declare_variable("unsigned PY_LONG_LONG", self.name, self.default_value)447 wrapper.parse_params.add_parameter('K', ['&'+name], self.name, optional=bool(self.default_value))448 wrapper.call_params.append(name)449class LongLongParam(Parameter):450 DIRECTIONS = [Parameter.DIRECTION_IN]451 CTYPES = ['long long', 'int64_t', 'long long int']452 def get_ctype_without_ref(self):453 return str(self.type_traits.ctype_no_const)454 def convert_c_to_python(self, wrapper):455 assert isinstance(wrapper, ReverseWrapperBase)456 wrapper.build_params.add_parameter('L', [self.value])457 def convert_python_to_c(self, wrapper):458 assert isinstance(wrapper, ForwardWrapperBase)459 name = wrapper.declarations.declare_variable(self.get_ctype_without_ref(), self.name, self.default_value)460 wrapper.parse_params.add_parameter('L', ['&'+name], self.name, optional=bool(self.default_value))461 wrapper.call_params.append(name)462class LongLongRefParam(LongLongParam):463 DIRECTIONS = [Parameter.DIRECTION_IN] # other directions not yet implemented464 CTYPES = ['long long&', 'int64_t&', 'long long int&']465 def get_ctype_without_ref(self):466 assert self.type_traits.target is not None467 return str(self.type_traits.target)468class LongLongReturn(ReturnValue):469 CTYPES = ['long long', 'int64_t', 'long long int']470 def get_c_error_return(self):471 return "return 0;"472 473 def convert_python_to_c(self, wrapper):474 wrapper.parse_params.add_parameter("L", ["&"+self.value], prepend=True)475 def convert_c_to_python(self, wrapper):476 wrapper.build_params.add_parameter("L", [self.value], prepend=True)477class Int8PtrParam(PointerParameter):478 DIRECTIONS = [Parameter.DIRECTION_IN, Parameter.DIRECTION_OUT,479 Parameter.DIRECTION_IN|Parameter.DIRECTION_OUT]480 CTYPES = ['int8_t*']481 def __init__(self, ctype, name, direction=None, is_const=None, default_value=None, transfer_ownership=None):482 if direction is None:483 if is_const:484 direction = Parameter.DIRECTION_IN485 else:486 raise TypeConfigurationError("direction not given")487 488 super(Int8PtrParam, self).__init__(ctype, name, direction, is_const, default_value, transfer_ownership)489 490 def convert_c_to_python(self, wrapper):491 if self.direction & self.DIRECTION_IN:492 wrapper.build_params.add_parameter('b', ['*'+self.value])493 if self.direction & self.DIRECTION_OUT:494 wrapper.parse_params.add_parameter("b", [self.value], self.name)495 def convert_python_to_c(self, wrapper):496 name = wrapper.declarations.declare_variable('int8_t', self.name)497 wrapper.call_params.append('&'+name)498 if self.direction & self.DIRECTION_IN:499 wrapper.parse_params.add_parameter('b', ['&'+name], self.name)500 if self.direction & self.DIRECTION_OUT:501 wrapper.build_params.add_parameter("b", [name])502class UInt8PtrParam(PointerParameter):503 DIRECTIONS = [Parameter.DIRECTION_IN, Parameter.DIRECTION_OUT,504 Parameter.DIRECTION_IN|Parameter.DIRECTION_OUT]505 CTYPES = ['uint8_t*']506 def __init__(self, ctype, name, direction=None, is_const=None, default_value=None, transfer_ownership=None):507 if direction is None:508 if is_const:509 direction = Parameter.DIRECTION_IN510 else:511 raise TypeConfigurationError("direction not given")512 513 super(UInt8PtrParam, self).__init__(ctype, name, direction, is_const, default_value, transfer_ownership)514 515 def convert_c_to_python(self, wrapper):516 if self.direction & self.DIRECTION_IN:517 wrapper.build_params.add_parameter('B', ['*'+self.value])518 if self.direction & self.DIRECTION_OUT:519 wrapper.parse_params.add_parameter("B", [self.value], self.name)520 def convert_python_to_c(self, wrapper):521 name = wrapper.declarations.declare_variable('uint8_t', self.name)522 wrapper.call_params.append('&'+name)523 if self.direction & self.DIRECTION_IN:524 wrapper.parse_params.add_parameter('B', ['&'+name], self.name)525 if self.direction & self.DIRECTION_OUT:...
LeeNet.py
Source:LeeNet.py
1from SloppyCell.ReactionNetworks import *2net = Network('Lee2003')3net.add_compartment('extract')4net.add_parameter('Dsh0', 100, name = r'Dsh^0')5net.add_parameter('APC0', 100, name = r'APC^0')6net.add_parameter('TCF0', 15, name = r'TCF^0')7net.add_parameter('GSK0', 50, name = r'GSK^0')8net.add_species('X2', 'extract', 0)#, name=r'Dsh_a')9net.add_species('X3', 'extract', 0)#, name=r'APC^*/axin^*/GSK3')10net.add_species('X4', 'extract', 0)#, name=r'APC/axin/GSK3')11net.add_species('X9', 'extract', 0)#, name=r'\beta-catenin^*/APC^*/axin^*/GSK3')12net.add_species('X10', 'extract', 0)#, name=r'\beta-catenin^*')13net.add_species('X11', 'extract', 0)#, name=r'\beta-catenin')14net.add_species('X12', 'extract', 0)#, name=r'Axin')15#net.add_species('X5', 'extract', 'GSK0', is_constant=True)#, name=r'GSK3')16net.add_species('X5', 'extract', 'GSK0', is_constant=True)#, name=r'GSK3')17net.add_species('X1', 'extract')#, name=r'Dsh_i')18net.add_species('X6', 'extract')#, name=r'APC/axin')19net.add_species('X7', 'extract')#, name=r'APC')20net.add_species('X8', 'extract')#, name=r'\beta-catenin/APC^*/axin^*/GSK3')21net.add_species('X13', 'extract')#, name=r'TCF')22net.add_species('X14', 'extract')#, name=r'\beta-catenin/TCF')23net.add_species('X15', 'extract')#, name=r'\beta-catenin/APC')24net.add_parameter('K7', 50, name = r'K_7')25net.add_parameter('K8', 120, name = r'K_8')26net.add_parameter('K16', 30, name = r'K_16')27net.add_parameter('K17', 1200, name = r'K_17')28net.add_parameter('k1', 0.182, name = r'k_{1}')29net.add_parameter('k2', 1.82e-2, name = r'k_{2}')30net.add_parameter('k3', 5e-2, name = r'k_{3}')31net.add_parameter('k4', 0.267, name = r'k_{4}')32net.add_parameter('k5', 0.133, name = r'k_{5}')33net.add_parameter('k6', 9.09e-2, name = r'k_{6}')34net.add_parameter('km6', 0.909, name = 'k_{-6}')35net.add_parameter('k9', 206, name = r'k_{9}')36net.add_parameter('k10', 206, name = r'k_{10}')37net.add_parameter('k11', 0.417, name = r'k_{11}')38net.add_parameter('k13', 2.57e-4, name = r'k_{13}')39net.add_parameter('k15', 0.167, name = r'k_{15}')40net.add_parameter('v12', 0.423, name = r'v_{12}')41net.add_parameter('v14', 8.22e-5, name = r'v_{14}')42#net.add_parameter('k1', 0.18, name = r'k_{1}')43#net.add_parameter('k2', 1.8e-2, name = r'k_{2}')44#net.add_parameter('k3', 5e-2, name = r'k_{3}')45#net.add_parameter('k4', 0.27, name = r'k_{4}')46#net.add_parameter('k5', 0.13, name = r'k_{5}')47#net.add_parameter('k6', 9.1e-2, name = r'k_{6}')48#net.add_parameter('km6', 0.91, name = 'k_{-6}')49#net.add_parameter('k9', 210, name = r'k_{9}')50#net.add_parameter('k10', 210, name = r'k_{10}')51#net.add_parameter('k11', 0.42, name = r'k_{11}')52#net.add_parameter('k13', 2.6e-4, name = r'k_{13}')53#net.add_parameter('k15', 0.17, name = r'k_{15}')54#55#net.add_parameter('v12', 0.42, name = r'v_{12}')56#net.add_parameter('v14', 8.2e-5, name = r'v_{14}')57net.add_parameter('W', 0, is_optimizable=False)58net.add_rate_rule('X2', 'k1*W*(Dsh0-X2)-k2*X2')59net.add_rate_rule('X9', 'k9 * X8 - k10*X9')60net.add_rate_rule('X10', 'k10*X9-k11*X10')61net.add_rate_rule('X4', '-k3*X2*X4 - k4*X4 + k5*X3 + k6*X5*X6 - km6*X4')62net.add_parameter('a')63net.add_assignment_rule('a', '1+APC0*K17/(K7*(K17+X11))')64net.add_parameter('b')65net.add_assignment_rule('b', 'APC0*K17*X12/(K7*(K17+X11)**2)')66net.add_parameter('c')67net.add_assignment_rule('c', 'k3*X2*X4 - k6 * GSK0*APC0*K17*X12/(K7*(K17+X11)) + km6*X4 + v14 - k15*X12')68net.add_parameter('d')69net.add_assignment_rule('d', '1+X11/K8')70net.add_parameter('e')71net.add_assignment_rule('e', 'X3/K8')72net.add_parameter('f')73net.add_assignment_rule('f', 'k4*X4 - k5*X3 - k9*X3*X11/K8 + k10*X9')74net.add_parameter('g')75net.add_assignment_rule('g', '1+X3/K8+TCF0*K16/(K16+X11)**2 + APC0*K17/(K17+X11)**2')76net.add_parameter('h')77net.add_assignment_rule('h', 'X11/K8')78net.add_parameter('i')79net.add_assignment_rule('i', 'v12 - (k9*X3/K8 + k13)*X11')80net.add_parameter('rhsX11', name = 'rhs_{X11}')81net.add_assignment_rule('rhsX11', '(d*i - f*h)/(d*g - e*h)')82net.add_rate_rule('X11', 'rhsX11')83net.add_rate_rule('X12', '(c + rhsX11*b)/a')84net.add_rate_rule('X3', '(e*i - f*g)/(e*h - d*g)')85net.add_assignment_rule('X1', 'Dsh0 - X2')86net.add_assignment_rule('X7', 'K17*APC0/(K17+X11)')87net.add_assignment_rule('X15', 'X11*APC0/(K17+X11)')88net.add_assignment_rule('X13', 'K16*TCF0/(K16+X11)')89net.add_assignment_rule('X14', 'X11*TCF0/(K16+X11)')90net.add_assignment_rule('X8', 'X3*X11/K8')91net.add_assignment_rule('X6', 'K17*X12*APC0/(K7*(K17+X11))')92# These are just for my own monitoring purposes93net.add_parameter('BCatenin', name = r'\beta-catenin')94net.add_assignment_rule('BCatenin', 'X8+X9+X10+X11+X14+X15')95net.add_parameter('Axin', name = r'Axin')...
GenerateFilmSpecimen.py
Source:GenerateFilmSpecimen.py
1#! /usr/bin/env python32# -*- coding: utf-8 -*-3from FilmSpecimenGenerator import Config4cfg = Config()5cfg.add_parameter("sizeX", "real_t", "0", "Specimen length (x direction)")6cfg.add_parameter("sizeY", "real_t", "0", "Specimen length (y direction)")7cfg.add_parameter("sizeZ", "real_t", "0", "Specimen length (z direction)")8cfg.add_parameter("oopp", "bool", "false", "Specimen out-of-plane periodicity (0 - film, 1 - cnt material)")9cfg.add_parameter("numBlocksX", "uint_t", "1", "Number of blocks in x direction")10cfg.add_parameter("numBlocksY", "uint_t", "1", "Number of blocks in y direction")11cfg.add_parameter("numBlocksZ", "uint_t", "1", "Number of blocks in z direction")12cfg.add_parameter("min_OOP", "real_t", "0", "Out-of-plane angle minimum")13cfg.add_parameter("max_OOP", "real_t", "0", "Out-of-plane angle maximum")14cfg.add_parameter("numCNTs", "int", "0", "Number of CNTs")15cfg.add_parameter("numSegs", "int", "0", "Number of segments in a CNT")16cfg.add_parameter("spacing", "real_t", "0", "Segment half-spacing")17cfg.add_parameter("localDamping", "real_t", "0", "Local damping coefficient")18cfg.add_parameter("viscousDamping", "real_t", "0", "Viscous damping coefficient")19cfg.add_parameter("seed", "uint_t", "0", "random generator seed")20cfg.add_parameter("vdW", "int", "0", "type of vdW interaction model")21cfg.add_parameter("simulationSteps", "int", "0", "Relaxation duration")22cfg.add_parameter("saveVTKEveryNthStep", "int", "0", "timesteps between saving VTK outputs")23cfg.add_parameter("saveEnergyEveryNthStep", "int", "0", "timesteps between saving energies")24cfg.add_parameter("saveConfEveryNthStep", "int", "0", "timesteps between saving confs")25cfg.add_parameter("vtkFolder", "std::string", '"."', "Folder for VTK files")26cfg.add_parameter("energyFolder", "std::string", '"."', "Folder for energy files")27cfg.add_parameter("confFolder", "std::string", '"."', "Folder for conf files")28cfg.add_parameter("useMPIIO", "bool", "false", "Write a single file instead of one file per process")29cfg.add_parameter("sqlFile", "std::string", '"cnt.sqlite"', "database file")30cfg.add_parameter("initialConfigurationFile", "std::string", '""', "restart from checkpoint")...
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