How to use make_listfile method in stestr

Best Python code snippet using stestr_python

test_processor.py

Source:test_processor.py

...137                self.test_ids, exclude_list=self.exclude_list,138                include_list=self.include_list,139                regexes=self.test_filters,140                exclude_regex=self.exclude_regex)141            name = self.make_listfile()142            variables['IDFILE'] = name143            idlist = ' '.join(self.test_ids)144        variables['IDLIST'] = idlist145        def subst(match):146            return variables.get(match.groups(1)[0], '')147        if self.test_ids is None:148            # No test ids, no id option.149            idoption = ''150        else:151            idoption = re.sub(variable_regex, subst, self.idoption)152            variables['IDOPTION'] = idoption153        self.cmd = re.sub(variable_regex, subst, cmd)154    def make_listfile(self):155        name = None156        try:157            if self._listpath:158                name = self._listpath159                stream = open(name, 'wb')160            else:161                fd, name = tempfile.mkstemp()162                stream = os.fdopen(fd, 'wb')163            with stream:164                self.list_file_name = name165                testlist.write_list(stream, self.test_ids)166        except Exception:167            if name:168                os.unlink(name)...

zrank.py

Source:zrank.py

...13    LOCAL = ["zrank"]14    def rank(self, complex_path, refinement=False, retry_with_protonatation=True):15        if not isinstance(complex_path, (list, tuple)):16            complex_path = [complex_path]17        listfile = self.make_listfile(complex_path)18        try:19            self(list_file=list_file, refinement=refinement)20        except (SystemExit, KeyboardInterrupt):21            raise22        except Exception as e:23            pdb2pqr = Pdb2pqr(work_dir=self.work_dir, job=self.job)24            if retry_with_protonatation:25                protonated_complex_file = pdb2pqr.debump_add_h(complex_path)26                listfile = self.make_listfile(protonated_complex_file)27                self(list_file=list_file, refinement=refinement)28        assert os.path.isfile(listfile+".zr.out"), "No output for zrank"29        with open(listfile+".zr.out") as f:30            scores = dict(line.rstrip().split() for line in f)31        if len(complex_path) == 1:32            scores = list(scores.values())[0]33        safe_remove((listfile, listfile.name+".zr.out"))34        return scores35    def make_listfile(self, complex_path):36        listfile = tempfile.NamedTemporaryFile(dir=work_dir, prefix="listfile", suffix=".txt", delete=False)37        for pdb in complex_path:38            print(os.path.basename(pdb), file=listfile)39        listfile.close()40        return listfile.name41# def run_zrank(complex_path, refinement=False, retry_with_protonatation=True,42#   work_dir=None, docker=True, job=None):43#     if work_dir is None:44#         work_dir = os.getcwd()45#46#     _parameters = ["-R"] if refinement else []47#48#     if not isinstance(complex_path, (list, tuple)):49#         complex_path = [complex_path]...

makelist.py

Source:makelist.py

...13import datetime14import numpy as np15import logging16logger = logging.getLogger(__name__)17def make_listfile(appdir, outname, outthread):18    outf = open(outname,'w')19    namepat = '([^_]*)_.*_(\d+)x(\d+)_.*'20    for dirpath, dnames, fnames in os.walk(appdir):21        for f in fnames:22            if f.endswith('.likelihood'):23                basename = f[:f.rfind('.')]24                #extract the <trainer, node, thread> from f25                m = re.search(namepat, f)26                if m:27                    trainer = m.group(1)28                    node = m.group(2)29                    thread = m.group(3)30                    if outthread:31                        outf.write('%s %s %s\n'%(basename, trainer, thread)) 32                    else:33                        outf.write('%s %s %s\n'%(basename, trainer, node)) 34if __name__ == "__main__":35    program = os.path.basename(sys.argv[0])36    logger = logging.getLogger(program)37    # logging configure38    import logging.config39    logging.basicConfig(format='%(asctime)s : %(levelname)s : %(message)s')40    logging.root.setLevel(level=logging.DEBUG)41    logger.info("running %s" % ' '.join(sys.argv))42    # check and process input arguments43    if len(sys.argv) < 3:44        logger.error(globals()['__doc__'] % locals())45        sys.exit(1)46    # check the path47    logdir = sys.argv[1]48    outname = sys.argv[2]49    outthread = True if sys.argv[3]=='thread' else False...

Automation Testing Tutorials

Learn to execute automation testing from scratch with LambdaTest Learning Hub. Right from setting up the prerequisites to run your first automation test, to following best practices and diving deeper into advanced test scenarios. LambdaTest Learning Hubs compile a list of step-by-step guides to help you be proficient with different test automation frameworks i.e. Selenium, Cypress, TestNG etc.