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How to use make_symlink method in yandex-tank
Best Python code snippet using yandex-tank
init.py.svn-base
Source:init.py.svn-base 
...64 def getinp(self, DEST,logger=None): 65 if logger is None: logger=logging.getLogger('pom')66 try:67 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)68 make_symlink(jn2r(self.GFSDIR, "gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"fort.11"),True,logger=logger)69 make_symlink(jn2r(self.GFSDIR, "gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"for11"),True,logger=logger) 70 make_symlink(jn2r(self.GFSDIR, "gfs.t"+hh+"z.sanl"),jn2r(DEST,"fort.12"),True,logger=logger) 71 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_topo_and_mask.united"),72 jn2r(DEST,"fort.66"),True,logger=logger)73 make_symlink(jn2r(self.FIXhwrf,"gfdl_gdem."+mm+".ascii"),74 jn2r(DEST,"fort.8"),True,logger=logger)75 make_symlink(jn2r(self.FIXhwrf,"gfdl_gdem."+mm1+".ascii"),76 jn2r(DEST,"fort.90"),True,logger=logger)77 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_readu.dat."+mm),78 jn2r(DEST,"fort.24"),True,logger=logger) 79 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_spinup_gdem3.dat."+mm),80 jn2r(DEST,"fort.82"),True,logger=logger)81 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_spinup_gspath."+mm),82 jn2r(DEST,"fort.50"),True,logger=logger)83 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_spinup.BAYuf"),84 jn2r(DEST,"fort.55"),True,logger=logger)85 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_spinup.FSgsuf"),86 jn2r(DEST,"fort.65"),True,logger=logger)87 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_spinup.SGYREuf"),88 jn2r(DEST,"fort.75"),True,logger=logger)89 lfile = jn2r(self.LCDIR,"hwrf_gfdl_loop_current_rmy5.dat."+y4+mm+dd)90 rfile = jn2r(self.LCDIR,"hwrf_gfdl_loop_current_wc_ring_rmy5.dat."+y4+mm+dd)91 if Isthis_LCuseful(self.STARTDATE, lfile, rfile,logger=logger):92 make_symlink(lfile,jn2r(DEST,"fort.31"),True,logger=logger)93 make_symlink(rfile,jn2r(DEST,"fort.32"),True,logger=logger) 94 else:95 make_symlink(jn2r(self.PARMhwrf,"hwrf_gfdl_loop_current_rmy5.dat"),96 jn2r(DEST,"fort.31"),True,logger=logger)97 make_symlink(jn2r(self.PARMhwrf,"hwrf_gfdl_loop_current_wc_ring_rmy5.dat"),98 jn2r(DEST,"fort.32"),True,logger=logger)99 inpfile(jn2r(DEST,"fort.91"), [mm, dd],logger=logger)100 inpfile(jn2r(DEST,"input_sharp"),["1"],logger=logger)101 inpfile(jn2r(DEST,"input"),102 [self.ODATA, "0", str(logi2int(self.SSTASIM)),self.STORMNAME],logger=logger)103 except Exception as e:104 msg='Cannot find input: '+str(e)105 logger.warning(msg,exc_info=True)106 raise POMInputError(msg)107 def setrun(self, DEST,logger=None):108 with NamedDir(DEST) as d:109 if logger is None: logger=logging.getLogger('pom')110 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)111 rmall(jn2r(DEST,"fort.23"),jn2r(DEST,"fort.74"),jn2r(DEST,"fort.77"),logger=logger)112 rmall(jn2r(DEST,"lonlat.gfs"),jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"mask.gfs.dat"),logger=logger)113 if os.path.exists(jn2r(DEST,"fort.11")) and os.path.exists(jn2r(DEST,"fort.12")):114 with open('listing','wb') as f:115 listing=str(produtil.listing.Listing())116 f.write(listing)117 produtil.rusage.getrlimit(logger)118 # Raise stack limit to 6000M119 produtil.rusage.setrlimit(ignore=True,logger=logger,stack=6e9)120 xc = self.conf.getexe('hwrf_getsst')121 log = jn2r(DEST,"getsst.out")122 with produtil.rusage.rusage(logger=logger):123 retcode = run(openmp(exe(xc),threads=1).env(OMP_STACKSIZE='128M')124 > log,logger=logger)125 logger.info("hwrf_getsst: err = %s" %(retcode))126 if retcode == 0 and os.path.exists(jn2r(DEST,"fort.74")):127 deliver_file(jn2r(DEST,"fort.74"),jn2r(DEST,"sst.gfs.dat"),False)128 deliver_file(jn2r(DEST,"fort.77"),jn2r(DEST,"mask.gfs.dat"),False)129 logger.info("GFS SST extracted: {0}".format(DEST))130 else:131 msg="hwrf_getsst Failed: NO GFS SST extracted: {0}".format(DEST)132 logger.warning(msg)133 raise POMSSTError(msg)134 else: 135 msg="GFS Spectral Files NOT Found in %s:" %(DEST)136 logger.error(msg)137 raise POMInputError(msg)138 if isnonempty('fort.31') and isnonempty('fort.32'):139 rmall(jn2r(DEST,"fort.13"),jn2r(DEST,"gfdl_initdata.united."+mm),logger=logger)140 xc = self.conf.getexe('hwrf_sharp_mcs_rf_l2m_rmy5')141 inp = jn2r(DEST,"input_sharp")142 log = jn2r(DEST,"sharp_mcs_r_l2b.out")143 retcode = run((exe(xc) < inp) >= log,logger=logger)144 logger.info("sharp_mcs_rf: err = %s" %(retcode))145 if retcode == 0 and os.path.exists(jn2r(DEST,"fort.13")):146 deliver_file(jn2r(DEST,"fort.13"),jn2r(DEST,"gfdl_initdata.united."+mm),False,logger=logger)147 logger.info("Specified LC penetration: {0}".format(retcode))148 else:149 deliver_file(jn2r(self.FIXhwrf,"gfdl_initdata.gdem.united."+mm), 150 jn2r(DEST,"gfdl_initdata.united."+mm),logger=logger)151 logger.warning("sharp_mcs_rf failed: Climate LC penetration %s" %(retcode))152 else:153 deliver_file(jn2r(self.FIXhwrf,"gfdl_initdata.gdem.united."+mm), 154 jn2r(DEST,"gfdl_initdata.united."+mm),logger=logger)155 # Log to highest log level so it is in the jlogfile:156 logger.critical("LC data NOT available: Climate LC penetration %s" %(retcode))157 if os.path.exists(jn2r(DEST,"gfdl_initdata.united."+mm)):158 make_symlink(DEST+"/gfdl_initdata.united."+mm, DEST+"/fort.13",True,logger=logger)159 xc = self.conf.getexe('hwrf_ocean_transatl06prep')160 log = jn2r(DEST,"transatl06prep.out")161 retcode = run(exe(xc) >= log, logger=logger)162 if retcode == 0 and os.path.exists(jn2r(DEST,"fort.113")):163 deliver_file(jn2r(DEST,"fort.113"),jn2r(DEST,"gfdl_initdata."+self.DOMAIN+"."+mm),False,logger=logger)164 logger.info("transatl06prep: Success {0}".format(retcode))165 else:166 msg="transatl06prep: Failed {0}".format(retcode)167 logger.warning(msg)168 raise POMPrepError(msg)169 else:170 logger.info("NOT Found in %s:" %("gfdl_initdata.united."+mm)) 171 if os.path.exists(jn2r(DEST,"gfdl_initdata."+self.DOMAIN+"."+mm)):172 deliver_file(jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"fort.21"),False,logger=logger)173 deliver_file(jn2r(DEST,"mask.gfs.dat"),jn2r(DEST,"fort.22"),False,logger=logger)174 rmall(jn2r(DEST,"fort.13"),logger=logger)175 make_symlink(jn2r(DEST,"gfdl_initdata."+self.DOMAIN+"."+mm),jn2r(DEST,"fort.13"),True,logger=logger)176 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_topo_and_mask."+self.DOMAIN+ 177 ".lores"), jn2r(DEST,"fort.66"),True,logger=logger)178 xc = self.conf.getexe("hwrf_ocean_pomprep_"+self.ODATA[0:2])179 inp = jn2r(DEST,"input")180 log = jn2r(DEST,"ocean_pomprep.out")181 retcode = run((exe(xc) < inp ) >= log,logger=logger)182 if retcode == 0 and os.path.exists(jn2r(DEST,self.STORMNAME+".grid.nc")):183 logger.info("ocean_pomprep: Success %s:" %(self.ODATA))184 return True185 else:186 msg="ocean_pomprep: Failed %s" %(self.ODATA)187 logger.warning(msg)188 raise POMInitFailed(msg)189 else:190 msg="NOT Found in %s:" %(''.join(["gfdl_initdata.",self.DOMAIN,".",mm]))191 logger.warning(msg)192 raise POMInitFailed(msg)193 194class g3(Oceanini):195 def __init__(self, *args,**kargs):196 super(g3,self).__init__(*args,**kargs)197 def getinp(self, DEST,logger=None):198 if logger is None: logger=logging.getLogger('pom')199 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)200 try:201 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"fort.11"),True,logger=logger)202 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"for11"),True,logger=logger)203 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sanl"),jn2r(DEST,"fort.12"),True,logger=logger)204 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_topo_and_mask."+205 self.DOMAIN+".lores"),jn2r(DEST,"fort.66"),True,logger=logger)206 make_symlink(jn2r(self.FIXhwrf,"tgdemv3s"+mm+".nc"),207 jn2r(DEST,"tin.nc"),True,logger=logger)208 make_symlink(jn2r(self.FIXhwrf,"sgdemv3s"+mm+".nc"),209 jn2r(DEST,"sin.nc"),True,logger=logger)210 inpfile(jn2r(DEST,"input"),211 [self.ODATA, "0", str(logi2int(self.SSTASIM)),self.STORMNAME],logger=logger)212 except Exception as e:213 msg='Input Data does NOT exist: %s'%(str(e),)214 logger.error(msg,exc_info=True)215 raise POMInputError(msg)216 def setrun(self, DEST,logger=None):217 with NamedDir(DEST):218 if logger is None: logger=logging.getLogger('pom')219 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)220 rmall(jn2r(DEST,"fort.23"),jn2r(DEST,"fort.74"),jn2r(DEST,"fort.77"),logger=logger)221 rmall(jn2r(DEST,"lonlat.gfs"),jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"mask.gfs.dat"),logger=logger)222 if os.path.exists(jn2r(DEST,"fort.11")) and os.path.exists(jn2r(DEST,"fort.12")):223 produtil.rusage.getrlimit(logger)224 # Raise stack limit to 6000M225 produtil.rusage.setrlimit(ignore=True,logger=logger,stack=6e9)226 xc = self.conf.getexe('hwrf_getsst')227 log = jn2r(DEST,"getsst.out")228 retcode = run(exe(xc).env(OMP_STACKSIZE='128M')229 > log,logger=logger)230 logger.info("hwrf_getsst: err = %s" %(retcode))231 if retcode == 0 and os.path.exists(jn2r(DEST,"fort.74")):232 deliver_file(jn2r(DEST,"fort.74"),jn2r(DEST,"sst.gfs.dat"),False,logger=logger)233 deliver_file(jn2r(DEST,"fort.77"),jn2r(DEST,"mask.gfs.dat"),False,logger=logger)234 logger.info("GFS SST extracted: {0}".format(retcode))235 else:236 msg="hwrf_getsst Failed: NO GFS SST extracted %s" %(retcode)237 logger.warning(msg)238 raise POMSSTError(msg)239 else:240 msg="GFS Spectral Files NOT Found in %s:" %(DEST)241 logger.warning(msg)242 raise POMInputError(msg)243 deliver_file(jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"fort.21"),False,logger=logger)244 deliver_file(jn2r(DEST,"mask.gfs.dat"),jn2r(DEST,"fort.22"),False,logger=logger)245 xc = self.conf.getexe("hwrf_ocean_pomprep_"+self.ODATA[0:2])246 inp = jn2r(DEST,"input")247 log = jn2r(DEST,"ocean_pomprep.out")248 retcode = run((exe(xc) < inp) > log,logger=logger)249 if retcode == 0 and os.path.exists(jn2r(DEST,self.STORMNAME+".grid.nc")):250 logging.info("ocean_pomprep: Success %s:" %(self.ODATA))251 return True252 else:253 msg="ocean_pomprep: Failed %s:" %(self.ODATA)254 logger.warning(msg)255 raise POMInitFailed(msg)256 257class na(Oceanini):258 def __init__(self, *args,**kargs):259 super(na,self).__init__(*args,**kargs)260 def getinp(self, DEST, logger=None):261 if logger is None: logger=logging.getLogger('pom')262 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)263 try:264 # RMY: For now, define local variable "NCDADIR" to point to the NCODA input data #265 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"fort.11"),True,logger=logger)266 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"for11"),True,logger=logger)267 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sanl"),jn2r(DEST,"fort.12"),True,logger=logger)268 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_topo_and_mask."+269 self.DOMAIN+".lores"),jn2r(DEST,"fort.66"),True,logger=logger)270 NCDADIR="/lfs2/projects/hwrf-vd/hwrf-input/NCODA/"+y4+"/"+y4+mm+dd+"/"271 make_symlink(jn2r(NCDADIR,"seatmp_pre_000000_005000_1o2161x1051_"+272 y4+mm+dd+"00_00000000_analfld"),jn2r(DEST,"fort.48"),True,logger=logger)273 make_symlink(jn2r(NCDADIR,"salint_pre_000000_005000_1o2161x1051_"+274 y4+mm+dd+"00_00000000_analfld"),jn2r(DEST,"fort.49"),True,logger=logger)275 make_symlink(jn2r(self.FIXhwrf,"depths_sfc_000000_000000_1o2161x1051_datafld"),276 jn2r(DEST,"fort.68"),True,logger=logger)277 make_symlink(jn2r(self.FIXhwrf,"grdlon_sfc_000000_000000_1o2161x1051_datafld"),278 jn2r(DEST,"fort.78"),True,logger=logger)279 make_symlink(jn2r(self.FIXhwrf,"grdlat_sfc_000000_000000_1o2161x1051_datafld"),280 jn2r(DEST,"fort.79"),True,logger=logger)281 ##################################################################################282 inpfile(jn2r(DEST,"input"), 283 [self.ODATA, "0", str(logi2int(self.SSTASIM)),self.STORMNAME],logger=logger)284 except Exception as e:285 msg='Input data does NOT exist: %s'%(str(e),)286 logger.error(msg,exc_info=True)287 raise POMInputError(msg)288 def setrun(self, DEST,logger=None):289 with NamedDir(DEST):290 if logger is None: logger=logging.getLogger('pom')291 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)292 rmall(jn2r(DEST,"fort.23"),jn2r(DEST,"fort.74"),jn2r(DEST,"fort.77"),logger=logger)293 rmall(jn2r(DEST,"lonlat.gfs"),jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"mask.gfs.dat"),logger=logger)294 if os.path.exists(jn2r(DEST,"fort.11")) and os.path.exists(jn2r(DEST,"fort.12")):295 produtil.rusage.getrlimit(logger)296 # Raise stack limit to 6000M297 produtil.rusage.setrlimit(ignore=True,logger=logger,stack=6e9)298 xc = self.conf.getexe('hwrf_getsst')299 log = jn2r(DEST,"getsst.out")300 retcode = run(exe(xc).env(OMP_STACKSIZE='128M')301 > log,logger=logger)302 logging.info("hwrf_getsst: err = %s" %(retcode))303 if retcode == 0 and os.path.exists(jn2r(DEST,"fort.74")):304 deliver_file(jn2r(DEST,"fort.74"),jn2r(DEST,"sst.gfs.dat"),False,logger=logger)305 deliver_file(jn2r(DEST,"fort.77"),jn2r(DEST,"mask.gfs.dat"),False,logger=logger)306 logger.info("GFS SST extracted: {0}".format(retcode))307 else:308 msg="hwrf_getsst Failed: NO GFS SST extracted %s"%(retcode)309 logger.warning(msg)310 raise POMSSTError(msg)311 else:312 msg="GFS Spectral Files NOT Found in %s:" %(DEST)313 logger.warning(msg)314 raise POMInputError(msg)315 deliver_file(jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"fort.21"),False,logger=logger)316 deliver_file(jn2r(DEST,"mask.gfs.dat"),jn2r(DEST,"fort.22"),False,logger=logger)317 xc = self.conf.getexe("hwrf_ocean_pomprep_"+self.ODATA[0:2])318 inp = jn2r(DEST,"input")319 log = jn2r(DEST,"ocean_pomprep.out")320 retcode = run((exe(xc) < inp) >log,logger=logger)321 if retcode == 0 and os.path.exists(jn2r(DEST,self.STORMNAME+".grid.nc")):322 logging.info("ocean_pomprep: Success %s:" %(self.ODATA))323 return True324 else:325 msg="ocean_pomprep: Failed %s:" %(self.ODATA)326 logger.warning(msg)327 raise POMInitFailed(msg)328class phase(Oceanini):329 def __init__(self,*args,**kargs):330 super(phase,self).__init__(*args,**kargs)331 def getinp(self, DEST, logger=None):332 if logger is None: logger=logging.getLogger('pom')333 try:334 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)335 SRC = jn2r(self.CSTREAM, self.ODIR)336 make_symlink(jn2r(SRC,self.STORMNAME+".grid.nc"),337 jn2r(DEST,self.STORMNAME+".grid.nc"),True,logger=logger)338 make_symlink(jn2r(SRC,self.STORMNAME+".ts_initial.nc"),339 jn2r(DEST,self.STORMNAME+".ts_initial.nc"),True,logger=logger)340 make_symlink(jn2r(SRC,self.STORMNAME+".ts_clim.nc"),341 jn2r(DEST,self.STORMNAME+".ts_clim.nc"),True,logger=logger)342 make_symlink(jn2r(SRC,self.STORMNAME+".uv_initial.nc"),343 jn2r(DEST,self.STORMNAME+".uv_initial.nc"),True,logger=logger) 344 make_symlink(jn2r(SRC,self.STORMNAME+".el_initial.nc"),345 jn2r(DEST,self.STORMNAME+".el_initial.nc"),True,logger=logger)346 except Exception as e:347 msg='Input data does not exist: %s'%(str(e),)348 logger.warning(msg,exc_info=True)349 raise POMInputError(msg)350 def setrun(self, DEST,logger=None):351 with NamedDir(DEST):352 if logger is None: logger=logging.getLogger('pom')353 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)354 if os.path.exists(jn2r(DEST,self.STORMNAME+".grid.nc")) and \355 os.path.exists(jn2r(DEST,"pom.nml")):356 exe = self.conf.getexe("hwrf_ocean_init")357 log = jn2r(DEST,"ocean_init.out")358 retcode=run(mpirun(mpi(exe)*9) >= log ,logger=logger)...
init.py
Source:init.py
...64 def getinp(self, DEST,logger=None): 65 if logger is None: logger=logging.getLogger('pom')66 try:67 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)68 make_symlink(jn2r(self.GFSDIR, "gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"fort.11"),True,logger=logger)69 make_symlink(jn2r(self.GFSDIR, "gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"for11"),True,logger=logger) 70 make_symlink(jn2r(self.GFSDIR, "gfs.t"+hh+"z.sanl"),jn2r(DEST,"fort.12"),True,logger=logger) 71 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_topo_and_mask.united"),72 jn2r(DEST,"fort.66"),True,logger=logger)73 make_symlink(jn2r(self.FIXhwrf,"gfdl_gdem."+mm+".ascii"),74 jn2r(DEST,"fort.8"),True,logger=logger)75 make_symlink(jn2r(self.FIXhwrf,"gfdl_gdem."+mm1+".ascii"),76 jn2r(DEST,"fort.90"),True,logger=logger)77 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_readu.dat."+mm),78 jn2r(DEST,"fort.24"),True,logger=logger) 79 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_spinup_gdem3.dat."+mm),80 jn2r(DEST,"fort.82"),True,logger=logger)81 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_spinup_gspath."+mm),82 jn2r(DEST,"fort.50"),True,logger=logger)83 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_spinup.BAYuf"),84 jn2r(DEST,"fort.55"),True,logger=logger)85 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_spinup.FSgsuf"),86 jn2r(DEST,"fort.65"),True,logger=logger)87 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_spinup.SGYREuf"),88 jn2r(DEST,"fort.75"),True,logger=logger)89 lfile = jn2r(self.LCDIR,"hwrf_gfdl_loop_current_rmy5.dat."+y4+mm+dd)90 rfile = jn2r(self.LCDIR,"hwrf_gfdl_loop_current_wc_ring_rmy5.dat."+y4+mm+dd)91 if Isthis_LCuseful(self.STARTDATE, lfile, rfile,logger=logger):92 make_symlink(lfile,jn2r(DEST,"fort.31"),True,logger=logger)93 make_symlink(rfile,jn2r(DEST,"fort.32"),True,logger=logger) 94 else:95 make_symlink(jn2r(self.PARMhwrf,"hwrf_gfdl_loop_current_rmy5.dat"),96 jn2r(DEST,"fort.31"),True,logger=logger)97 make_symlink(jn2r(self.PARMhwrf,"hwrf_gfdl_loop_current_wc_ring_rmy5.dat"),98 jn2r(DEST,"fort.32"),True,logger=logger)99 inpfile(jn2r(DEST,"fort.91"), [mm, dd],logger=logger)100 inpfile(jn2r(DEST,"input_sharp"),["1"],logger=logger)101 inpfile(jn2r(DEST,"input"),102 [self.ODATA, "0", str(logi2int(self.SSTASIM)),self.STORMNAME],logger=logger)103 except Exception as e:104 msg='Cannot find input: '+str(e)105 logger.warning(msg,exc_info=True)106 raise POMInputError(msg)107 def setrun(self, DEST,logger=None):108 with NamedDir(DEST) as d:109 if logger is None: logger=logging.getLogger('pom')110 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)111 rmall(jn2r(DEST,"fort.23"),jn2r(DEST,"fort.74"),jn2r(DEST,"fort.77"),logger=logger)112 rmall(jn2r(DEST,"lonlat.gfs"),jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"mask.gfs.dat"),logger=logger)113 if os.path.exists(jn2r(DEST,"fort.11")) and os.path.exists(jn2r(DEST,"fort.12")):114 with open('listing','wb') as f:115 listing=str(produtil.listing.Listing())116 f.write(listing)117 produtil.rusage.getrlimit(logger)118 # Raise stack limit to 6000M119 produtil.rusage.setrlimit(ignore=True,logger=logger,stack=6e9)120 xc = self.conf.getexe('hwrf_getsst')121 log = jn2r(DEST,"getsst.out")122 with produtil.rusage.rusage(logger=logger):123 retcode = run(openmp(exe(xc),threads=1).env(OMP_STACKSIZE='128M')124 > log,logger=logger)125 logger.info("hwrf_getsst: err = %s" %(retcode))126 if retcode == 0 and os.path.exists(jn2r(DEST,"fort.74")):127 deliver_file(jn2r(DEST,"fort.74"),jn2r(DEST,"sst.gfs.dat"),False)128 deliver_file(jn2r(DEST,"fort.77"),jn2r(DEST,"mask.gfs.dat"),False)129 logger.info("GFS SST extracted: {0}".format(DEST))130 else:131 msg="hwrf_getsst Failed: NO GFS SST extracted: {0}".format(DEST)132 logger.warning(msg)133 raise POMSSTError(msg)134 else: 135 msg="GFS Spectral Files NOT Found in %s:" %(DEST)136 logger.error(msg)137 raise POMInputError(msg)138 if isnonempty('fort.31') and isnonempty('fort.32'):139 rmall(jn2r(DEST,"fort.13"),jn2r(DEST,"gfdl_initdata.united."+mm),logger=logger)140 xc = self.conf.getexe('hwrf_sharp_mcs_rf_l2m_rmy5')141 inp = jn2r(DEST,"input_sharp")142 log = jn2r(DEST,"sharp_mcs_r_l2b.out")143 retcode = run((exe(xc) < inp) >= log,logger=logger)144 logger.info("sharp_mcs_rf: err = %s" %(retcode))145 if retcode == 0 and os.path.exists(jn2r(DEST,"fort.13")):146 deliver_file(jn2r(DEST,"fort.13"),jn2r(DEST,"gfdl_initdata.united."+mm),False,logger=logger)147 logger.info("Specified LC penetration: {0}".format(retcode))148 else:149 deliver_file(jn2r(self.FIXhwrf,"gfdl_initdata.gdem.united."+mm), 150 jn2r(DEST,"gfdl_initdata.united."+mm),logger=logger)151 logger.warning("sharp_mcs_rf failed: Climate LC penetration %s" %(retcode))152 else:153 deliver_file(jn2r(self.FIXhwrf,"gfdl_initdata.gdem.united."+mm), 154 jn2r(DEST,"gfdl_initdata.united."+mm),logger=logger)155 # Log to highest log level so it is in the jlogfile:156 logger.critical("LC data NOT available: Climate LC penetration %s" %(retcode))157 if os.path.exists(jn2r(DEST,"gfdl_initdata.united."+mm)):158 make_symlink(DEST+"/gfdl_initdata.united."+mm, DEST+"/fort.13",True,logger=logger)159 xc = self.conf.getexe('hwrf_ocean_transatl06prep')160 log = jn2r(DEST,"transatl06prep.out")161 retcode = run(exe(xc) >= log, logger=logger)162 if retcode == 0 and os.path.exists(jn2r(DEST,"fort.113")):163 deliver_file(jn2r(DEST,"fort.113"),jn2r(DEST,"gfdl_initdata."+self.DOMAIN+"."+mm),False,logger=logger)164 logger.info("transatl06prep: Success {0}".format(retcode))165 else:166 msg="transatl06prep: Failed {0}".format(retcode)167 logger.warning(msg)168 raise POMPrepError(msg)169 else:170 logger.info("NOT Found in %s:" %("gfdl_initdata.united."+mm)) 171 if os.path.exists(jn2r(DEST,"gfdl_initdata."+self.DOMAIN+"."+mm)):172 deliver_file(jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"fort.21"),False,logger=logger)173 deliver_file(jn2r(DEST,"mask.gfs.dat"),jn2r(DEST,"fort.22"),False,logger=logger)174 rmall(jn2r(DEST,"fort.13"),logger=logger)175 make_symlink(jn2r(DEST,"gfdl_initdata."+self.DOMAIN+"."+mm),jn2r(DEST,"fort.13"),True,logger=logger)176 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_topo_and_mask."+self.DOMAIN+ 177 ".lores"), jn2r(DEST,"fort.66"),True,logger=logger)178 xc = self.conf.getexe("hwrf_ocean_pomprep_"+self.ODATA[0:2])179 inp = jn2r(DEST,"input")180 log = jn2r(DEST,"ocean_pomprep.out")181 retcode = run((exe(xc) < inp ) >= log,logger=logger)182 if retcode == 0 and os.path.exists(jn2r(DEST,self.STORMNAME+".grid.nc")):183 logger.info("ocean_pomprep: Success %s:" %(self.ODATA))184 return True185 else:186 msg="ocean_pomprep: Failed %s" %(self.ODATA)187 logger.warning(msg)188 raise POMInitFailed(msg)189 else:190 msg="NOT Found in %s:" %(''.join(["gfdl_initdata.",self.DOMAIN,".",mm]))191 logger.warning(msg)192 raise POMInitFailed(msg)193 194class g3(Oceanini):195 def __init__(self, *args,**kargs):196 super(g3,self).__init__(*args,**kargs)197 def getinp(self, DEST,logger=None):198 if logger is None: logger=logging.getLogger('pom')199 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)200 try:201 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"fort.11"),True,logger=logger)202 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"for11"),True,logger=logger)203 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sanl"),jn2r(DEST,"fort.12"),True,logger=logger)204 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_topo_and_mask."+205 self.DOMAIN+".lores"),jn2r(DEST,"fort.66"),True,logger=logger)206 make_symlink(jn2r(self.FIXhwrf,"tgdemv3s"+mm+".nc"),207 jn2r(DEST,"tin.nc"),True,logger=logger)208 make_symlink(jn2r(self.FIXhwrf,"sgdemv3s"+mm+".nc"),209 jn2r(DEST,"sin.nc"),True,logger=logger)210 inpfile(jn2r(DEST,"input"),211 [self.ODATA, "0", str(logi2int(self.SSTASIM)),self.STORMNAME],logger=logger)212 except Exception as e:213 msg='Input Data does NOT exist: %s'%(str(e),)214 logger.error(msg,exc_info=True)215 raise POMInputError(msg)216 def setrun(self, DEST,logger=None):217 with NamedDir(DEST):218 if logger is None: logger=logging.getLogger('pom')219 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)220 rmall(jn2r(DEST,"fort.23"),jn2r(DEST,"fort.74"),jn2r(DEST,"fort.77"),logger=logger)221 rmall(jn2r(DEST,"lonlat.gfs"),jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"mask.gfs.dat"),logger=logger)222 if os.path.exists(jn2r(DEST,"fort.11")) and os.path.exists(jn2r(DEST,"fort.12")):223 produtil.rusage.getrlimit(logger)224 # Raise stack limit to 6000M225 produtil.rusage.setrlimit(ignore=True,logger=logger,stack=6e9)226 xc = self.conf.getexe('hwrf_getsst')227 log = jn2r(DEST,"getsst.out")228 retcode = run(exe(xc).env(OMP_STACKSIZE='128M')229 > log,logger=logger)230 logger.info("hwrf_getsst: err = %s" %(retcode))231 if retcode == 0 and os.path.exists(jn2r(DEST,"fort.74")):232 deliver_file(jn2r(DEST,"fort.74"),jn2r(DEST,"sst.gfs.dat"),False,logger=logger)233 deliver_file(jn2r(DEST,"fort.77"),jn2r(DEST,"mask.gfs.dat"),False,logger=logger)234 logger.info("GFS SST extracted: {0}".format(retcode))235 else:236 msg="hwrf_getsst Failed: NO GFS SST extracted %s" %(retcode)237 logger.warning(msg)238 raise POMSSTError(msg)239 else:240 msg="GFS Spectral Files NOT Found in %s:" %(DEST)241 logger.warning(msg)242 raise POMInputError(msg)243 deliver_file(jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"fort.21"),False,logger=logger)244 deliver_file(jn2r(DEST,"mask.gfs.dat"),jn2r(DEST,"fort.22"),False,logger=logger)245 xc = self.conf.getexe("hwrf_ocean_pomprep_"+self.ODATA[0:2])246 inp = jn2r(DEST,"input")247 log = jn2r(DEST,"ocean_pomprep.out")248 retcode = run((exe(xc) < inp) > log,logger=logger)249 if retcode == 0 and os.path.exists(jn2r(DEST,self.STORMNAME+".grid.nc")):250 logging.info("ocean_pomprep: Success %s:" %(self.ODATA))251 return True252 else:253 msg="ocean_pomprep: Failed %s:" %(self.ODATA)254 logger.warning(msg)255 raise POMInitFailed(msg)256 257class na(Oceanini):258 def __init__(self, *args,**kargs):259 super(na,self).__init__(*args,**kargs)260 def getinp(self, DEST, logger=None):261 if logger is None: logger=logging.getLogger('pom')262 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)263 try:264 # RMY: For now, define local variable "NCDADIR" to point to the NCODA input data #265 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"fort.11"),True,logger=logger)266 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sfcanl"),jn2r(DEST,"for11"),True,logger=logger)267 make_symlink(jn2r(self.GFSDIR,"gfs.t"+hh+"z.sanl"),jn2r(DEST,"fort.12"),True,logger=logger)268 make_symlink(jn2r(self.FIXhwrf,"gfdl_ocean_topo_and_mask."+269 self.DOMAIN+".lores"),jn2r(DEST,"fort.66"),True,logger=logger)270 NCDADIR="/lfs2/projects/hwrf-vd/hwrf-input/NCODA/"+y4+"/"+y4+mm+dd+"/"271 make_symlink(jn2r(NCDADIR,"seatmp_pre_000000_005000_1o2161x1051_"+272 y4+mm+dd+"00_00000000_analfld"),jn2r(DEST,"fort.48"),True,logger=logger)273 make_symlink(jn2r(NCDADIR,"salint_pre_000000_005000_1o2161x1051_"+274 y4+mm+dd+"00_00000000_analfld"),jn2r(DEST,"fort.49"),True,logger=logger)275 make_symlink(jn2r(self.FIXhwrf,"depths_sfc_000000_000000_1o2161x1051_datafld"),276 jn2r(DEST,"fort.68"),True,logger=logger)277 make_symlink(jn2r(self.FIXhwrf,"grdlon_sfc_000000_000000_1o2161x1051_datafld"),278 jn2r(DEST,"fort.78"),True,logger=logger)279 make_symlink(jn2r(self.FIXhwrf,"grdlat_sfc_000000_000000_1o2161x1051_datafld"),280 jn2r(DEST,"fort.79"),True,logger=logger)281 ##################################################################################282 inpfile(jn2r(DEST,"input"), 283 [self.ODATA, "0", str(logi2int(self.SSTASIM)),self.STORMNAME],logger=logger)284 except Exception as e:285 msg='Input data does NOT exist: %s'%(str(e),)286 logger.error(msg,exc_info=True)287 raise POMInputError(msg)288 def setrun(self, DEST,logger=None):289 with NamedDir(DEST):290 if logger is None: logger=logging.getLogger('pom')291 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)292 rmall(jn2r(DEST,"fort.23"),jn2r(DEST,"fort.74"),jn2r(DEST,"fort.77"),logger=logger)293 rmall(jn2r(DEST,"lonlat.gfs"),jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"mask.gfs.dat"),logger=logger)294 if os.path.exists(jn2r(DEST,"fort.11")) and os.path.exists(jn2r(DEST,"fort.12")):295 produtil.rusage.getrlimit(logger)296 # Raise stack limit to 6000M297 produtil.rusage.setrlimit(ignore=True,logger=logger,stack=6e9)298 xc = self.conf.getexe('hwrf_getsst')299 log = jn2r(DEST,"getsst.out")300 retcode = run(exe(xc).env(OMP_STACKSIZE='128M')301 > log,logger=logger)302 logging.info("hwrf_getsst: err = %s" %(retcode))303 if retcode == 0 and os.path.exists(jn2r(DEST,"fort.74")):304 deliver_file(jn2r(DEST,"fort.74"),jn2r(DEST,"sst.gfs.dat"),False,logger=logger)305 deliver_file(jn2r(DEST,"fort.77"),jn2r(DEST,"mask.gfs.dat"),False,logger=logger)306 logger.info("GFS SST extracted: {0}".format(retcode))307 else:308 msg="hwrf_getsst Failed: NO GFS SST extracted %s"%(retcode)309 logger.warning(msg)310 raise POMSSTError(msg)311 else:312 msg="GFS Spectral Files NOT Found in %s:" %(DEST)313 logger.warning(msg)314 raise POMInputError(msg)315 deliver_file(jn2r(DEST,"sst.gfs.dat"),jn2r(DEST,"fort.21"),False,logger=logger)316 deliver_file(jn2r(DEST,"mask.gfs.dat"),jn2r(DEST,"fort.22"),False,logger=logger)317 xc = self.conf.getexe("hwrf_ocean_pomprep_"+self.ODATA[0:2])318 inp = jn2r(DEST,"input")319 log = jn2r(DEST,"ocean_pomprep.out")320 retcode = run((exe(xc) < inp) >log,logger=logger)321 if retcode == 0 and os.path.exists(jn2r(DEST,self.STORMNAME+".grid.nc")):322 logging.info("ocean_pomprep: Success %s:" %(self.ODATA))323 return True324 else:325 msg="ocean_pomprep: Failed %s:" %(self.ODATA)326 logger.warning(msg)327 raise POMInitFailed(msg)328class phase(Oceanini):329 def __init__(self,*args,**kargs):330 super(phase,self).__init__(*args,**kargs)331 def getinp(self, DEST, logger=None):332 if logger is None: logger=logging.getLogger('pom')333 try:334 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)335 SRC = jn2r(self.CSTREAM, self.ODIR)336 make_symlink(jn2r(SRC,self.STORMNAME+".grid.nc"),337 jn2r(DEST,self.STORMNAME+".grid.nc"),True,logger=logger)338 make_symlink(jn2r(SRC,self.STORMNAME+".ts_initial.nc"),339 jn2r(DEST,self.STORMNAME+".ts_initial.nc"),True,logger=logger)340 make_symlink(jn2r(SRC,self.STORMNAME+".ts_clim.nc"),341 jn2r(DEST,self.STORMNAME+".ts_clim.nc"),True,logger=logger)342 make_symlink(jn2r(SRC,self.STORMNAME+".uv_initial.nc"),343 jn2r(DEST,self.STORMNAME+".uv_initial.nc"),True,logger=logger) 344 make_symlink(jn2r(SRC,self.STORMNAME+".el_initial.nc"),345 jn2r(DEST,self.STORMNAME+".el_initial.nc"),True,logger=logger)346 except Exception as e:347 msg='Input data does not exist: %s'%(str(e),)348 logger.warning(msg,exc_info=True)349 raise POMInputError(msg)350 def setrun(self, DEST,logger=None):351 with NamedDir(DEST):352 if logger is None: logger=logging.getLogger('pom')353 (y4,mm,mm1,dd,hh) = ysplitter(self.STARTDATE)354 if os.path.exists(jn2r(DEST,self.STORMNAME+".grid.nc")) and \355 os.path.exists(jn2r(DEST,"pom.nml")):356 exe = self.conf.getexe("hwrf_ocean_init")357 log = jn2r(DEST,"ocean_init.out")358 retcode=run(mpirun(mpi(exe)*9) >= log ,logger=logger)...
corefs.py
Source:corefs.py
...43 'tmp',44 'usr',45 'var',46 )47 corefs.make_symlink('usr/lib64', 'lib')48 corefs.make_symlink('usr/lib64', 'lib64')49 corefs.make_symlink('usr/lib32', 'lib32')50 corefs.make_symlink('usr/bin', 'bin')51 corefs.make_symlink('usr/bin', 'sbin')52 # /media hierarchy53 corefs.make_keepers(54 'media/floppy',55 'media/cdrom',56 'media/cdrecorder',57 'media/zip',58 )59 # /usr hierarchy60 corefs.make_keepers(61 'usr/bin',62 'usr/games',63 'usr/include',64 'usr/lib64',65 'usr/lib32',66 'usr/libexec',67 'usr/local',68 'usr/share',69 'usr/src',70 )71 corefs.make_symlink('lib64', 'usr/lib')72 corefs.make_symlink('bin', 'usr/sbin')73 corefs.make_symlink('../var/tmp', 'usr/tmp')74 # /usr/lib hierarchy75 corefs.make_keepers('usr/lib64/modules')76 # /usr/local hierarchy77 corefs.make_keepers(78 'usr/local/bin',79 'usr/local/etc',80 'usr/local/games',81 'usr/local/include',82 'usr/local/lib64',83 'usr/local/lib32',84 'usr/local/man',85 'usr/local/share',86 'usr/local/src',87 )88 corefs.make_symlink('lib64', 'usr/local/lib')89 corefs.make_symlink('bin', 'usr/local/sbin')90 # /usr/share hierarchy91 corefs.make_keepers(92 'usr/share',93 'usr/src',94 )95 # /var hierarchy96 corefs.make_keepers(97 'var/tmp'98 )99 corefs.make_symlink('../run', 'var/run')100 with stdlib.pushd(corefs.wrap_cache):101 # Change permission of /root, /tmp and /var/tmp102 os.chmod('root', 0o700)103 os.chmod('tmp', 0o1777)104 os.chmod('var/tmp', 0o1777)105 # Write a default etc/passwd106 with open('etc/passwd', 'w+') as passwd:107 passwd.write(dedent('''\108 root:x:0:0:root:/root:/usr/bin/bash109 bin:x:1:1:bin:/dev/null:/usr/bin/false110 daemon:x:6:6:Daemon User:/dev/null:/usr/bin/false111 nobody:x:65534:65534:nobody:/var/empty:/usr/bin/false112 '''))113 # Write a default etc/group...
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