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test_protocol_chimera_map_subtraction.py

Source:test_protocol_chimera_map_subtraction.py

1# ***************************************************************************2# * Authors:    Marta Martinez (mmmtnez@cnb.csic.es)3# *             Roberto Marabini (roberto@cnb.csic.es)4# *5# *6# * This program is free software; you can redistribute it and/or modify7# * it under the terms of the GNU General Public License as published by8# * the Free Software Foundation; either version 2 of the License, or9# * (at your option) any later version.10# *11# * This program is distributed in the hope that it will be useful,12# * but WITHOUT ANY WARRANTY; without even the implied warranty of13# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the14# * GNU General Public License for more details.15# *16# * You should have received a copy of the GNU General Public License17# * along with this program; if not, write to the Free Software18# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA19# * 02111-1307  USA20# *21# *  All comments concerning this program package may be sent to the22# *  e-mail address 'scipion@cnb.csic.es'23# ***************************************************************************/24# TODO: Fill in the next line25# protocol to test a chimerax map subtraction starting from two maps or26# a map and an additional map derived from an atomic structure.27from ..protocols import ChimeraProtOperate28from ..protocols import ChimeraSubtractionMaps29from pwem.protocols.protocol_import import (ProtImportPdb,30                                            ProtImportVolumes)31from ..constants import CHIMERA_CYCLIC32import re33# from pwem import Domain34from pyworkflow.tests import *35import os.path36class TestImportBase(BaseTest):37    @classmethod38    def setUpClass(cls):39        setupTestProject(cls)40        cls.dsModBuild = DataSet.getDataSet('model_building_tutorial')41class TestImportData(TestImportBase):42    """ Import map volumes and atomic structures(PDBx/mmCIF files)43    """44    pdbID = "5ni1"  # Haemoglobin atomic structure45    chainID = '{"model": 0, "chain": "A", "residues": 141}'46    FirstResidue = '{"residue": 6, "ASP"}'47    LastResidue = '{"residue": 10, "VAL"}'48    def _importVolume(self):49        args = {'filesPath': self.dsModBuild.getFile('volumes/emd_3488.map'),50                'samplingRate': 1.05,51                'setOrigCoord': False52                }53        protImportVol = self.newProtocol(ProtImportVolumes, **args)54        protImportVol.setObjLabel('import volume haemoglobin\n with default '55                                  'origin\n')56        self.launchProtocol(protImportVol)57        volume = protImportVol.outputVolume58        return volume59    def _importAtomStruct(self):60        args = {'inputPdbData': ProtImportPdb.IMPORT_FROM_ID,61                'pdbId': self.pdbID62                }63        protImportPDB = self.newProtocol(ProtImportPdb, **args)64        protImportPDB.setObjLabel('import pdb\n 5ni1')65        self.launchProtocol(protImportPDB)66        structure = protImportPDB.outputPdb67        return structure68class TestChimeraSubtractMap(TestImportData):69    """ Test the chimera subtraction map protocol70    """71    def testChimeraSubtract1(self):72        """ This test checks the subtraction in Chimera of a73        model-derived map from an imported map """74        print("Run Chimera subtraction of a model-derived map "75              "from the imported volume\n")76        # Import Volume77        volume = self._importVolume()78        # import PDB79        structure = self._importAtomStruct()80        # create auxiliary CMD file for chimera operate (model fitting)81        extraCommands = ""82        extraCommands += "move -52.50,-52.50,-51.88 model #3 " \83                         "coord #2\n"84        extraCommands += "fitmap #3 in #2\n"85        extraCommands += "scipionwrite #3 " \86                         "prefix DONOTSAVESESSION_\n"87        extraCommands += "exit\n"88        args = {'extraCommands': extraCommands,89                'inputVolume': volume,90                'pdbFileToBeRefined': structure91                }92        protChimera1 = self.newProtocol(ChimeraProtOperate,93                                       **args)94        protChimera1.setObjLabel('chimera operate\n volume and pdb\n save '95                                 'fitted model')96        self.launchProtocol(protChimera1)97        # Dynamically defined name of the variable because it does depend on98        # the protocol ID99        try:100            result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d.getFileName()"101                          % protChimera1.getObjId())102        except:103            self.assertTrue(False, "There was a problem with the alignment")104        self.assertTrue(os.path.exists(result))105        # TODO: These steps of protChimera2 can not be performed in protChimera1 because106        # when the map is saved keep an inappropriate origin107        extraCommands = ""108        # extraCommands += "molmap #2 2.1 gridSpacing 1.05 modelId 3\n"109        extraCommands += "molmap #2 2.1 gridSpacing 1.05 replace false\n"110        extraCommands += "scipionwrite #3 " \111                         "prefix DONOTSAVESESSION_\n"112        extraCommands += "exit\n"113        result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d"114                      % protChimera1.getObjId())115        args = {'extraCommands': extraCommands,116                'pdbFileToBeRefined': result,117                }118        protChimera2 = self.newProtocol(ChimeraProtOperate,119                                        **args)120        protChimera2.setObjLabel('chimera operate\n pdb\n save '121                                 'model-derived map')122        self.launchProtocol(protChimera2)123        try:124            result = eval("protChimera2.DONOTSAVESESSION_Map__3_%06d.getFileName()"125                          % protChimera2.getObjId())126        except:127            self.assertTrue(False, "There was a problem with the alignment")128        self.assertTrue(os.path.exists(result))129        # protocol chimera map subtraction130        extraCommands = "run(session, 'select all')\n"131        extraCommands += "run(session, 'exit')\n"132        result = eval("protChimera2.DONOTSAVESESSION_Map__3_%06d"133                      % protChimera2.getObjId())134        args = {'extraCommands': extraCommands,135                'inputVolume': volume,136                'mapOrModel': 0,137                'inputVolume2': result,138                }139        protChimera3 = self.newProtocol(ChimeraSubtractionMaps, **args)140        protChimera3.setObjLabel('chimera subtract\n map -\n'141                                 'model-derived map\n')142        self.launchProtocol(protChimera3)143        # Dynamically defined name of the variable because it does depend on144        # the protocol ID145        try:146            result = eval("protChimera3.difference_Map__8_%06d.getFileName()"147                 % protChimera3.getObjId())148        except:149            self.assertTrue(False,  "There was a problem with the alignment")150        self.assertTrue(os.path.exists(result))151        try:152            result = eval("protChimera3.filtered_Map__9_%06d.getFileName()"153                 % protChimera3.getObjId())154        except:155            self.assertTrue(False,  "There was a problem with the alignment")156        self.assertTrue(os.path.exists(result))157    def testChimeraSubtract2(self):158        """ This test checks the subtraction in Chimera of a159        model with control mutations from an imported map """160        print("Run Chimera subtraction of a model with control "161              "mutations from an imported volume\n")162        # Import Volume163        volume = self._importVolume()164        # import PDB165        structure = self._importAtomStruct()166        # create auxiliary CMD file for chimera operate (model fitting)167        extraCommands = ""168        extraCommands += "move -52.50,-52.50,-51.88 model #3 " \169                         "coord #2\n"170        extraCommands += "fitmap #3 in #2\n"171        extraCommands += "scipionwrite #3 " \172                         "prefix DONOTSAVESESSION_\n"173        extraCommands += "exit\n"174        args = {'extraCommands': extraCommands,175                'inputVolume': volume,176                'pdbFileToBeRefined': structure177                }178        protChimera1 = self.newProtocol(ChimeraProtOperate,179                                        **args)180        protChimera1.setObjLabel('chimera operate\n volume and pdb\n save '181                                 'fitted model')182        self.launchProtocol(protChimera1)183        try:184            result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d.getFileName()"185                 % protChimera1.getObjId())186        except:187            self.assertTrue(False,  "There was a problem with the alignment")188        self.assertTrue(os.path.exists(result))189        # protocol chimera map subtraction190        extraCommands = "run(session, 'select all')\n"191        extraCommands += "run(session, 'exit')\n"192        result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d"193                      % protChimera1.getObjId())194        args = {'extraCommands': extraCommands,195                'inputVolume': volume,196                'mapOrModel': 1,197                'resolution': 3.2,198                'pdbFileToBeRefined': result,199                'selectChain': True,200                'selectStructureChain': self.chainID,201                'removeResidues': True,202                'firstResidueToRemove': self.FirstResidue,203                'lastResidueToRemove': self.LastResidue,204                'applySymmetry': True,205                'symmetryGroup': CHIMERA_CYCLIC,206                'symmetryOrder': 2,207                'rangeDist': 100,208                'selectAreaMap': True,209                'radius': 1210                }211        protChimera2 = self.newProtocol(ChimeraSubtractionMaps, **args)212        protChimera2.setObjLabel('chimera subtract\n chainA-sym-derived map\n '213                                  'removed residues\nzone')214        self.launchProtocol(protChimera2)215        try:216            result = eval("protChimera2.chain_A_Atom_struct__4_%06d_cif.getFileName()"217                 % protChimera2.getObjId())218        except:219            self.assertTrue(False,  "There was a problem with the alignment")220        self.assertTrue(os.path.exists(result))221        try:222            result = eval("protChimera2.zone_Map__6_%06d.getFileName()"223                 % protChimera2.getObjId())224        except:225            self.assertTrue(False,  "There was a problem with the alignment")226        self.assertTrue(os.path.exists(result))227        try:228            result = eval("protChimera2.molmap_chainA_Map__7_%06d.getFileName()"229                 % protChimera2.getObjId())230        except:231            self.assertTrue(False,  "There was a problem with the alignment")232        self.assertTrue(os.path.exists(result))233        try:234            result = eval("protChimera2.difference_Map__8_%06d.getFileName()"235                 % protChimera2.getObjId())236        except:237            self.assertTrue(False,  "There was a problem with the alignment")238        self.assertTrue(os.path.exists(result))239        try:240            result = eval("protChimera2.filtered_Map__9_%06d.getFileName()"241                 % protChimera2.getObjId())242        except:243            self.assertTrue(False,  "There was a problem with the alignment")244        self.assertTrue(os.path.exists(result))245        # protocol chimera map subtraction246        extraCommands = "run(session, 'select all')\n"247        extraCommands += "run(session, 'exit')\n"248        result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d"249                      % protChimera1.getObjId())250        args = {'extraCommands': extraCommands,251                'inputVolume': volume,252                'mapOrModel': 1,253                'resolution': 3.2,254                'pdbFileToBeRefined': result,255                'selectChain': True,256                'selectStructureChain': self.chainID,257                'removeResidues': True,258                'firstResidueToRemove': self.FirstResidue,259                'lastResidueToRemove': self.LastResidue,260                'applySymmetry': True,261                'symmetryGroup': CHIMERA_CYCLIC,262                'symmetryOrder': 2,263                'rangeDist': 100264                }265        protChimera3 = self.newProtocol(ChimeraSubtractionMaps, **args)266        protChimera3.setObjLabel('chimera subtract\n chainA-sym-derived map\n '267                                 'removed residues\nno zone')268        self.launchProtocol(protChimera3)269        try:270            result = eval("protChimera3.chain_A_Atom_struct__4_%06d_cif.getFileName()"271                 % protChimera3.getObjId())272        except:273            self.assertTrue(False,  "There was a problem with the alignment")274        self.assertTrue(os.path.exists(result))275        try:276            result = eval("protChimera3.sym_Atom_struct__5_%06d_cif.getFileName()"277                 % protChimera3.getObjId())278        except:279            self.assertTrue(False,  "There was a problem with the alignment")280        self.assertTrue(os.path.exists(result))281        try:282            result = eval("protChimera3.molmap_chainA_Map__7_%06d.getFileName()"283                 % protChimera3.getObjId())284        except:285            self.assertTrue(False,  "There was a problem with the alignment")286        self.assertTrue(os.path.exists(result))287        try:288            result = eval("protChimera3.difference_Map__8_%06d.getFileName()"289                 % protChimera3.getObjId())290        except:291            self.assertTrue(False,  "There was a problem with the alignment")292        self.assertTrue(os.path.exists(result))293        try:294            result = eval("protChimera3.filtered_Map__9_%06d.getFileName()"295                 % protChimera3.getObjId())296        except:297            self.assertTrue(False,  "There was a problem with the alignment")298        self.assertTrue(os.path.exists(result))299        # protocol chimera map subtraction300        extraCommands = "run(session, 'select all')\n"301        extraCommands += "run(session, 'exit')\n"302        result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d"303                      % protChimera1.getObjId())304        args = {'extraCommands': extraCommands,305                'inputVolume': volume,306                'mapOrModel': 1,307                'resolution': 3.2,308                'pdbFileToBeRefined': result,309                'selectChain': True,310                'selectStructureChain': self.chainID,311                'applySymmetry': True,312                'symmetryGroup': CHIMERA_CYCLIC,313                'symmetryOrder': 2,314                'rangeDist': 100,315                'selectAreaMap': True,316                'radius': 1317                }318        protChimera4 = self.newProtocol(ChimeraSubtractionMaps, **args)319        protChimera4.setObjLabel('chimera subtract\n chainA-sym-derived map\n')320        self.launchProtocol(protChimera4)321        try:322            result = eval("protChimera4.chain_A_Atom_struct__4_%06d_cif.getFileName()"323                 % protChimera4.getObjId())324        except:325            self.assertTrue(False,  "There was a problem with the alignment")326        self.assertTrue(os.path.exists(result))327        try:328            result = eval("protChimera4.sym_Atom_struct__5_%06d_cif.getFileName()"329                 % protChimera4.getObjId())330        except:331            self.assertTrue(False,  "There was a problem with the alignment")332        self.assertTrue(os.path.exists(result))333        try:334            result = eval("protChimera4.zone_Map__6_%06d.getFileName()"335                 % protChimera4.getObjId())336        except:337            self.assertTrue(False,  "There was a problem with the alignment")338        self.assertTrue(os.path.exists(result))339        try:340            result = eval("protChimera4.molmap_chainA_Map__7_%06d.getFileName()"341                 % protChimera4.getObjId())342        except:343            self.assertTrue(False,  "There was a problem with the alignment")344        self.assertTrue(os.path.exists(result))345        try:346            result = eval("protChimera4.difference_Map__8_%06d.getFileName()"347                 % protChimera4.getObjId())348        except:349            self.assertTrue(False,  "There was a problem with the alignment")350        self.assertTrue(os.path.exists(result))351        try:352            result = eval("protChimera4.filtered_Map__9_%06d.getFileName()"353                 % protChimera4.getObjId())354        except:355            self.assertTrue(False,  "There was a problem with the alignment")356        self.assertTrue(os.path.exists(result))357        # protocol chimera map subtraction358        extraCommands = "run(session, 'select all')\n"359        extraCommands += "run(session, 'exit')\n"360        result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d"361                      % protChimera1.getObjId())362        args = {'extraCommands': extraCommands,363                'inputVolume': volume,364                'mapOrModel': 1,365                'resolution': 3.2,366                'pdbFileToBeRefined': result,367                'selectChain': True,368                'selectStructureChain': self.chainID,369                'selectAreaMap': True,370                'radius': 1371                }372        protChimera5 = self.newProtocol(ChimeraSubtractionMaps, **args)373        protChimera5.setObjLabel('chimera subtract\n chainA-derived map\n')374        self.launchProtocol(protChimera5)375        try:376            result = eval("protChimera5.chain_A_Atom_struct__4_%06d_cif.getFileName()"377                 % protChimera5.getObjId())378        except:379            self.assertTrue(False,  "There was a problem with the alignment")380        self.assertTrue(os.path.exists(result))381        try:382            result = eval("protChimera5.zone_Map__6_%06d.getFileName()"383                 % protChimera5.getObjId())384        except:385            self.assertTrue(False,  "There was a problem with the alignment")386        self.assertTrue(os.path.exists(result))387        try:388            result = eval("protChimera5.molmap_chainA_Map__7_%06d.getFileName()"389                 % protChimera5.getObjId())390        except:391            self.assertTrue(False,  "There was a problem with the alignment")392        self.assertTrue(os.path.exists(result))393        try:394            result = eval("protChimera5.difference_Map__8_%06d.getFileName()"395                 % protChimera5.getObjId())396        except:397            self.assertTrue(False,  "There was a problem with the alignment")398        self.assertTrue(os.path.exists(result))399        try:400            result = eval("protChimera5.filtered_Map__9_%06d.getFileName()"401                 % protChimera5.getObjId())402        except:403            self.assertTrue(False,  "There was a problem with the alignment")404        self.assertTrue(os.path.exists(result))405        # protocol chimera map subtraction406        extraCommands = "run(session, 'select all')\n"407        extraCommands += "run(session, 'exit')\n"408        result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d"409                      % protChimera1.getObjId())410        args = {'extraCommands': extraCommands,411                'inputVolume': volume,412                'mapOrModel': 1,413                'resolution': 3.2,414                'pdbFileToBeRefined': result,415                'selectChain': True,416                'selectStructureChain': self.chainID,417                }418        protChimera6 = self.newProtocol(ChimeraSubtractionMaps, **args)419        protChimera6.setObjLabel('chimera subtract\n chainA-derived map\nno zone')420        self.launchProtocol(protChimera6)421        try:422            result = eval("protChimera6.chain_A_Atom_struct__4_%06d_cif.getFileName()"423                 % protChimera6.getObjId())424        except:425            self.assertTrue(False,  "There was a problem with the alignment")426        self.assertTrue(os.path.exists(result))427        try:428            result = eval("protChimera6.molmap_chainA_Map__7_%06d.getFileName()"429                 % protChimera6.getObjId())430        except:431            self.assertTrue(False,  "There was a problem with the alignment")432        self.assertTrue(os.path.exists(result))433        try:434            result = eval("protChimera6.difference_Map__8_%06d.getFileName()"435                 % protChimera6.getObjId())436        except:437            self.assertTrue(False,  "There was a problem with the alignment")438        self.assertTrue(os.path.exists(result))439        try:440            result = eval("protChimera6.filtered_Map__9_%06d.getFileName()"441                 % protChimera6.getObjId())442        except:443            self.assertTrue(False,  "There was a problem with the alignment")444        self.assertTrue(os.path.exists(result))445    def testChimeraSubtract3(self):446        """ This test checks the subtraction in Chimera of a447        model with control mutations from an imported map """448        print("Run Chimera subtraction of a model with control "449              "mutations from an imported volume\n")450        # Import Volume451        volume = self._importVolume()452        # import PDB453        structure = self._importAtomStruct()454        # create auxiliary CMD file for chimera operate (model fitting)455        extraCommands = ""456        extraCommands += "move -52.50,-52.50,-51.88 model #3 " \457                         "coord #2\n"458        extraCommands += "fitmap #3 in #2\n"459        extraCommands += "scipionwrite #3 " \460                         "prefix DONOTSAVESESSION_\n"461        extraCommands += "exit\n"462        args = {'extraCommands': extraCommands,463                'inputVolume': volume,464                'pdbFileToBeRefined': structure465                }466        protChimera1 = self.newProtocol(ChimeraProtOperate,467                                        **args)468        protChimera1.setObjLabel('chimera operate\n volume and pdb\n save '469                                 'fitted model')470        self.launchProtocol(protChimera1)471        try:472            result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d.getFileName()"473                 % protChimera1.getObjId())474        except:475            self.assertTrue(False,  "There was a problem with the alignment")476        self.assertTrue(os.path.exists(result))477        # protocol chimera map subtraction478        extraCommands = "run(session, 'select all')\n"479        extraCommands += "run(session, 'exit')\n"480        result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d"481                      % protChimera1.getObjId())482        args = {'extraCommands': extraCommands,483                'inputVolume': volume,484                'mapOrModel': 1,485                'resolution': 3.2,486                'pdbFileToBeRefined': result,487                'removeResidues': True,488                'inputStructureChain': self.chainID,489                'firstResidueToRemove': self.FirstResidue,490                'lastResidueToRemove': self.LastResidue,491                }492        protChimera2 = self.newProtocol(ChimeraSubtractionMaps, **args)493        protChimera2.setObjLabel('chimera subtract\n atomStruct-derived map\n '494                                  'removed residues\nno zone')495        self.launchProtocol(protChimera2)496        try:497            result = eval("protChimera2.mutated_Atom_struct__3_%06d_cif.getFileName()"498                 % protChimera2.getObjId())499        except:500            self.assertTrue(False,  "There was a problem with the alignment")501        self.assertTrue(os.path.exists(result))502        try:503            result = eval("protChimera2.molmap_Map__7_%06d.getFileName()"504                 % protChimera2.getObjId())505        except:506            self.assertTrue(False,  "There was a problem with the alignment")507        self.assertTrue(os.path.exists(result))508        try:509            result = eval("protChimera2.difference_Map__8_%06d.getFileName()"510                 % protChimera2.getObjId())511        except:512            self.assertTrue(False,  "There was a problem with the alignment")513        self.assertTrue(os.path.exists(result))514        try:515            result = eval("protChimera2.filtered_Map__9_%06d.getFileName()"516                 % protChimera2.getObjId())517        except:518            self.assertTrue(False,  "There was a problem with the alignment")519        self.assertTrue(os.path.exists(result))520        # protocol chimera map subtraction521        extraCommands = "run(session, 'select all')\n"522        extraCommands += "run(session, 'exit')\n"523        result = eval("protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d"524                      % protChimera1.getObjId())525        args = {'extraCommands': extraCommands,526                'inputVolume': volume,527                'mapOrModel': 1,528                'resolution': 3.2,529                'pdbFileToBeRefined': result,530                }531        protChimera3 = self.newProtocol(ChimeraSubtractionMaps, **args)532        protChimera3.setObjLabel('chimera subtract\n atomStruct-derived map\n '533                                 'no zone')534        self.launchProtocol(protChimera3)535        try:536            result = eval("protChimera3.Atom_struct__3_%06d_cif.getFileName()"537                 % protChimera3.getObjId())538        except:539            self.assertTrue(False,  "There was a problem with the alignment")540        self.assertTrue(os.path.exists(result))541        try:542            result = eval("protChimera3.molmap_Map__7_%06d.getFileName()"543                 % protChimera3.getObjId())544        except:545            self.assertTrue(False,  "There was a problem with the alignment")546        self.assertTrue(os.path.exists(result))547        try:548            result = eval("protChimera3.difference_Map__8_%06d.getFileName()"549                 % protChimera3.getObjId())550        except:551            self.assertTrue(False,  "There was a problem with the alignment")552        self.assertTrue(os.path.exists(result))553        try:554            result = eval("protChimera3.filtered_Map__9_%06d.getFileName()"555                 % protChimera3.getObjId())556        except:557            self.assertTrue(False,  "There was a problem with the alignment")558        self.assertTrue(os.path.exists(result))559    def testChimeraSubtract4(self):560        """ This test checks the subtraction in Chimera of a561        model with control mutations from an imported map """562        print("Run Chimera subtraction of a model with control "563              "mutations from an imported volume\n")564        # Import Volume565        volume = self._importVolume()566        # import PDB567        structure = self._importAtomStruct()568        # create auxiliary CMD file for chimera operate (model fitting)569        extraCommands = ""570        extraCommands += "move -52.50,-52.50,-51.88 model #3 " \571                         "coord #2\n"572        extraCommands += "fitmap #3 in #2\n"573        extraCommands += "scipionwrite #3 " \574                         "prefix DONOTSAVESESSION_\n"575        extraCommands += "exit\n"576        args = {'extraCommands': extraCommands,577                'inputVolume': volume,578                'pdbFileToBeRefined': structure579                }580        protChimera1 = self.newProtocol(ChimeraProtOperate,581                                        **args)582        protChimera1.setObjLabel('chimera operate\n volume and pdb\n save '583                                 'fitted model')584        self.launchProtocol(protChimera1)585        try:586            result = eval(587                "protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d.getFileName()"588                 % protChimera1.getObjId())589        except:590            self.assertTrue(False,  "There was a problem with the alignment")591        self.assertTrue(os.path.exists(result))592        # TODO: These steps of protChimera2 can not be performed in protChimera1 because593        # second way of obtaining the starting atom structure (it generates an appropriate594        # cif by applying symmetry)595        extraCommands = ""596        extraCommands += "sel #2/A,B\n"597        extraCommands += "save /tmp/chainA_B.cif format mmcif models #2 relModel #1 selectedOnly true\n"598        extraCommands += "open /tmp/chainA_B.cif\n"599        extraCommands += "scipionwrite #3 " \600                         "prefix DONOTSAVESESSION_A_B_\n"601        extraCommands += "exit\n"602        result = eval(603            "protChimera1.DONOTSAVESESSION_Atom_struct__3_%06d"604            % protChimera1.getObjId())605        args = {'extraCommands': extraCommands,606                'pdbFileToBeRefined': result607                }608        protChimera2 = self.newProtocol(ChimeraProtOperate,609                                        **args)610        protChimera2.setObjLabel('chimera operate\n pdb\n save chain A_B')611        self.launchProtocol(protChimera2)612        try:613            result = eval(614                "protChimera2.DONOTSAVESESSION_A_B_Atom_struct__3_%06d.getFileName()"615                 % protChimera2.getObjId())616        except:617            self.assertTrue(False,  "There was a problem with the alignment")618        self.assertTrue(os.path.exists(result))619        # protocol chimera map subtraction620        extraCommands = "run(session, 'select all')\n"621        extraCommands += "run(session, 'exit')\n"622        result = eval(623            "protChimera2.DONOTSAVESESSION_A_B_Atom_struct__3_%06d"624            % protChimera2.getObjId())625        args = {'extraCommands': extraCommands,626                'inputVolume': volume,627                'mapOrModel': 1,628                'resolution': 3.2,629                'pdbFileToBeRefined': result,630                # 'selectChain': True,631                # 'selectStructureChain': self.chainID,632                # 'removeResidues': True,633                # 'inputStructureChain': self.chainID,634                # 'firstResidueToRemove': self.FirstResidue,635                # 'lastResidueToRemove': self.LastResidue,636                'applySymmetry': True,637                'symmetryGroup': CHIMERA_CYCLIC,638                'symmetryOrder': 2,639                # 'selectAreaMap': True,640                # 'radius': 1641                }642        protChimera3 = self.newProtocol(ChimeraSubtractionMaps, **args)643        protChimera3.setObjLabel('chimera subtract\n chainAB-sym-derived map\n')644        self.launchProtocol(protChimera3)645        try:646            result = eval(647                "protChimera3.Atom_struct__3_%06d_cif.getFileName()"648                 % protChimera3.getObjId())649        except:650            self.assertTrue(False,  "There was a problem with the alignment")651        self.assertTrue(os.path.exists(result))652        try:653            result = eval(654                "protChimera3.sym_Atom_struct__5_%06d_cif.getFileName()"655                 % protChimera3.getObjId())656        except:657            self.assertTrue(False,  "There was a problem with the alignment")658        self.assertTrue(os.path.exists(result))659        try:660            result = eval(661                "protChimera3.molmap_Map__7_%06d.getFileName()"662                 % protChimera3.getObjId())663        except:664            self.assertTrue(False,  "There was a problem with the alignment")665        self.assertTrue(os.path.exists(result))666        try:667            result = eval(668                "protChimera3.difference_Map__8_%06d.getFileName()"669                 % protChimera3.getObjId())670        except:671            self.assertTrue(False,  "There was a problem with the alignment")672        self.assertTrue(os.path.exists(result))673        try:674            result = eval(675                "protChimera3.filtered_Map__9_%06d.getFileName()"676                 % protChimera3.getObjId())677        except:678            self.assertTrue(False,  "There was a problem with the alignment")679        self.assertTrue(os.path.exists(result))680        # protocol chimera map subtraction681        extraCommands = "run(session, 'select all')\n"682        extraCommands += "run(session, 'exit')\n"683        result = eval(684            "protChimera2.DONOTSAVESESSION_A_B_Atom_struct__3_%06d"685            % protChimera2.getObjId())686        args = {'extraCommands': extraCommands,687                'inputVolume': volume,688                'mapOrModel': 1,689                'resolution': 3.2,690                'pdbFileToBeRefined': result,691                # 'selectChain': True,692                # 'selectStructureChain': self.chainID,693                # 'removeResidues': True,694                # 'inputStructureChain': self.chainID,695                # 'firstResidueToRemove': self.FirstResidue,696                # 'lastResidueToRemove': self.LastResidue,697                'applySymmetry': True,698                'symmetryGroup': CHIMERA_CYCLIC,699                'symmetryOrder': 2,700                'selectAreaMap': True,701                'radius': 1702                }703        protChimera4 = self.newProtocol(ChimeraSubtractionMaps, **args)704        protChimera4.setObjLabel('chimera subtract\n chainA-sym-derived map\n'705                                 'zone')706        self.launchProtocol(protChimera4)707        try:708            result = eval(709                "protChimera4.Atom_struct__3_%06d_cif.getFileName()"710                 % protChimera4.getObjId())711        except:712            self.assertTrue(False,  "There was a problem with the alignment")713        self.assertTrue(os.path.exists(result))714        try:715            result = eval(716                "protChimera4.sym_Atom_struct__5_%06d_cif.getFileName()"717                 % protChimera4.getObjId())718        except:719            self.assertTrue(False,  "There was a problem with the alignment")720        self.assertTrue(os.path.exists(result))721        try:722            result = eval(723                "protChimera4.zone_Map__6_%06d.getFileName()"724                 % protChimera4.getObjId())725        except:726            self.assertTrue(False,  "There was a problem with the alignment")727        self.assertTrue(os.path.exists(result))728        try:729            result = eval(730                "protChimera4.molmap_Map__7_%06d.getFileName()"731                 % protChimera4.getObjId())732        except:733            self.assertTrue(False,  "There was a problem with the alignment")734        self.assertTrue(os.path.exists(result))735        try:736            result = eval(737                "protChimera4.difference_Map__8_%06d.getFileName()"738                 % protChimera4.getObjId())739        except:740            self.assertTrue(False,  "There was a problem with the alignment")741        self.assertTrue(os.path.exists(result))742        try:743            result = eval(744                "protChimera4.filtered_Map__9_%06d.getFileName()"745                 % protChimera4.getObjId())746        except:747            self.assertTrue(False,  "There was a problem with the alignment")748        self.assertTrue(os.path.exists(result))749        # protocol chimera map subtraction750        extraCommands = "run(session, 'select all')\n"751        extraCommands += "run(session, 'exit')\n"752        result = eval(753            "protChimera2.DONOTSAVESESSION_A_B_Atom_struct__3_%06d"754            % protChimera2.getObjId())755        args = {'extraCommands': extraCommands,756                'inputVolume': volume,757                'mapOrModel': 1,758                'resolution': 3.2,759                'pdbFileToBeRefined': result,760                # 'selectChain': True,761                # 'selectStructureChain': self.chainID,762                'removeResidues': True,763                'inputStructureChain': self.chainID,764                'firstResidueToRemove': self.FirstResidue,765                'lastResidueToRemove': self.LastResidue,766                'applySymmetry': True,767                'symmetryGroup': CHIMERA_CYCLIC,768                'symmetryOrder': 2,769                'selectAreaMap': True,770                'radius': 1771                }772        protChimera5 = self.newProtocol(ChimeraSubtractionMaps, **args)773        protChimera5.setObjLabel('chimera subtract\n chainA-sym-derived map\n'774                                 'remove residues\nzone')775        self.launchProtocol(protChimera5)776        try:777            result = eval(778                "protChimera5.Atom_struct__3_%06d_cif.getFileName()"779                % protChimera5.getObjId())780        except:781            self.assertTrue(False, "There was a problem with the alignment")782        self.assertTrue(os.path.exists(result))783        try:784            result = eval(785                "protChimera5.sym_Atom_struct__5_%06d_cif.getFileName()"786                % protChimera5.getObjId())787        except:788            self.assertTrue(False, "There was a problem with the alignment")789        self.assertTrue(os.path.exists(result))790        try:791            result = eval(792                "protChimera5.zone_Map__6_%06d.getFileName()"793                % protChimera5.getObjId())794        except:795            self.assertTrue(False, "There was a problem with the alignment")796        self.assertTrue(os.path.exists(result))797        try:798            result = eval(799                "protChimera5.molmap_Map__7_%06d.getFileName()"800                % protChimera5.getObjId())801        except:802            self.assertTrue(False, "There was a problem with the alignment")803        self.assertTrue(os.path.exists(result))804        try:805            result = eval(806                "protChimera5.difference_Map__8_%06d.getFileName()"807                % protChimera5.getObjId())808        except:809            self.assertTrue(False, "There was a problem with the alignment")810        self.assertTrue(os.path.exists(result))811        try:812            result = eval(813                "protChimera5.filtered_Map__9_%06d.getFileName()"814                % protChimera5.getObjId())815        except:816            self.assertTrue(False, "There was a problem with the alignment")817        self.assertTrue(os.path.exists(result))818        # protocol chimera map subtraction819        extraCommands = "run(session, 'select all')\n"820        extraCommands += "run(session, 'exit')\n"821        result = eval(822            "protChimera2.DONOTSAVESESSION_A_B_Atom_struct__3_%06d"823            % protChimera2.getObjId())824        args = {'extraCommands': extraCommands,825                'inputVolume': volume,826                'mapOrModel': 1,827                'resolution': 3.2,828                'pdbFileToBeRefined': result,829                # 'selectChain': True,830                # 'selectStructureChain': self.chainID,831                'removeResidues': True,832                'inputStructureChain': self.chainID,833                'firstResidueToRemove': self.FirstResidue,834                'lastResidueToRemove': self.LastResidue,835                'applySymmetry': True,836                'symmetryGroup': CHIMERA_CYCLIC,837                'symmetryOrder': 2838                }839        protChimera6 = self.newProtocol(ChimeraSubtractionMaps, **args)840        protChimera6.setObjLabel('chimera subtract\n chainAB-sym-derived map\n'841                                 'remove residues\nno zone')842        self.launchProtocol(protChimera6)843        try:844            result = eval(845                "protChimera6.Atom_struct__3_%06d_cif.getFileName()"846                % protChimera6.getObjId())847        except:848            self.assertTrue(False, "There was a problem with the alignment")849        self.assertTrue(os.path.exists(result))850        try:851            result = eval(852                "protChimera6.mutated_Atom_struct__3_%06d_cif.getFileName()"853                % protChimera6.getObjId())854        except:855            self.assertTrue(False, "There was a problem with the alignment")856        self.assertTrue(os.path.exists(result))857        try:858            result = eval(859                "protChimera6.sym_Atom_struct__5_%06d_cif.getFileName()"860                % protChimera6.getObjId())861        except:862            self.assertTrue(False, "There was a problem with the alignment")863        self.assertTrue(os.path.exists(result))864        try:865            result = eval(866                "protChimera6.molmap_Map__7_%06d.getFileName()"867                % protChimera6.getObjId())868        except:869            self.assertTrue(False, "There was a problem with the alignment")870        self.assertTrue(os.path.exists(result))871        try:872            result = eval(873                "protChimera6.difference_Map__8_%06d.getFileName()"874                % protChimera6.getObjId())875        except:876            self.assertTrue(False, "There was a problem with the alignment")877        self.assertTrue(os.path.exists(result))878        try:879            result = eval(880                "protChimera6.filtered_Map__9_%06d.getFileName()"881                % protChimera6.getObjId())882        except:883            self.assertTrue(False, "There was a problem with the alignment")884        self.assertTrue(os.path.exists(result))885        # protocol chimera map subtraction886        extraCommands = "run(session, 'select all')\n"887        extraCommands += "run(session, 'exit')\n"888        result = eval(889            "protChimera2.DONOTSAVESESSION_A_B_Atom_struct__3_%06d"890            % protChimera2.getObjId())891        args = {'extraCommands': extraCommands,892                'inputVolume': volume,893                'mapOrModel': 1,894                'level': 0.217,895                'resolution': 3.2,896                'pdbFileToBeRefined': result,897                # 'selectChain': True,898                # 'selectStructureChain': self.chainID,899                'removeResidues': True,900                'inputStructureChain': self.chainID,901                'firstResidueToRemove': self.FirstResidue,902                'lastResidueToRemove': self.LastResidue,903                'applySymmetry': True,904                'symmetryGroup': CHIMERA_CYCLIC,905                'symmetryOrder': 2906                }907        protChimera7 = self.newProtocol(ChimeraSubtractionMaps, **args)908        protChimera7.setObjLabel('chimera subtract\n chainAB-sym-derived map\n'909                                 'remove residues\nlevel selected\nno zone')910        self.launchProtocol(protChimera7)911        try:912            result = eval(913                "protChimera7.Atom_struct__3_%06d_cif.getFileName()"914                % protChimera7.getObjId())915        except:916            self.assertTrue(False, "There was a problem with the alignment")917        self.assertTrue(os.path.exists(result))918        try:919            result = eval(920                "protChimera7.mutated_Atom_struct__3_%06d_cif.getFileName()"921                % protChimera7.getObjId())922        except:923            self.assertTrue(False, "There was a problem with the alignment")924        self.assertTrue(os.path.exists(result))925        try:926            result = eval(927                "protChimera7.sym_Atom_struct__5_%06d_cif.getFileName()"928                % protChimera7.getObjId())929        except:930            self.assertTrue(False, "There was a problem with the alignment")931        self.assertTrue(os.path.exists(result))932        try:933            result = eval(934                "protChimera7.molmap_Map__7_%06d.getFileName()"935                % protChimera7.getObjId())936        except:937            self.assertTrue(False, "There was a problem with the alignment")938        self.assertTrue(os.path.exists(result))939        try:940            result = eval(941                "protChimera7.difference_Map__8_%06d.getFileName()"942                % protChimera7.getObjId())943        except:944            self.assertTrue(False, "There was a problem with the alignment")945        self.assertTrue(os.path.exists(result))946        try:947            result = eval(948                "protChimera7.filtered_Map__9_%06d.getFileName()"949                % protChimera7.getObjId())950        except:951            self.assertTrue(False, "There was a problem with the alignment")952        self.assertTrue(os.path.exists(result))953        # protocol chimera mask954        extraCommands = "run(session, 'select all')\n"955        extraCommands += "run(session, 'exit')\n"956        result = eval(957            "protChimera2.DONOTSAVESESSION_A_B_Atom_struct__3_%06d"958            % protChimera2.getObjId())959        args = {'extraCommands': extraCommands,960                'inputVolume': volume,961                'subtractOrMask': 1,962                'level': 0.217,963                'mapOrModel': 1,964                'resolution': 3.2,965                'pdbFileToBeRefined': result,966                # 'selectChain': True,967                # 'selectStructureChain': self.chainID,968                'removeResidues': True,969                'inputStructureChain': self.chainID,970                'firstResidueToRemove': self.FirstResidue,971                'lastResidueToRemove': self.LastResidue,972                'applySymmetry': True,973                'symmetryGroup': CHIMERA_CYCLIC,974                'symmetryOrder': 2975                }976        protChimera8 = self.newProtocol(ChimeraSubtractionMaps, **args)977        protChimera8.setObjLabel('chimera mask\n chainAB-sym-derived map\n'978                                 'remove residues\nlevel 0.217\nno zone')979        self.launchProtocol(protChimera8)980        try:981            result = eval(982                "protChimera8.Atom_struct__3_%06d_cif.getFileName()"983                % protChimera8.getObjId())984        except:985            self.assertTrue(False, "There was a problem with the alignment")986        self.assertTrue(os.path.exists(result))987        try:988            result = eval(989                "protChimera8.mutated_Atom_struct__3_%06d_cif.getFileName()"990                % protChimera8.getObjId())991        except:992            self.assertTrue(False, "There was a problem with the alignment")993        self.assertTrue(os.path.exists(result))994        try:995            result = eval(996                "protChimera8.sym_Atom_struct__5_%06d_cif.getFileName()"997                % protChimera8.getObjId())998        except:999            self.assertTrue(False, "There was a problem with the alignment")1000        self.assertTrue(os.path.exists(result))1001        try:1002            result = eval(1003                "protChimera8.molmap_Map__7_%06d.getFileName()"1004                % protChimera8.getObjId())1005        except:1006            self.assertTrue(False, "There was a problem with the alignment")1007        self.assertTrue(os.path.exists(result))1008        try:1009            result = eval(1010                "protChimera8.difference_Map__8_%06d.getFileName()"1011                % protChimera8.getObjId())1012        except:1013            self.assertTrue(False, "There was a problem with the alignment")1014        self.assertTrue(os.path.exists(result))1015        try:1016            result = eval(1017                "protChimera8.filtered_Map__9_%06d.getFileName()"1018                % protChimera8.getObjId())1019        except:1020            self.assertTrue(False, "There was a problem with the alignment")1021        self.assertTrue(os.path.exists(result))1022        # protocol chimera mask1023        extraCommands = "run(session, 'select all')\n"1024        extraCommands += "run(session, 'exit')\n"1025        result = eval(1026            "protChimera2.DONOTSAVESESSION_A_B_Atom_struct__3_%06d"1027            % protChimera2.getObjId())1028        args = {'extraCommands': extraCommands,1029                'inputVolume': volume,1030                'subtractOrMask': 1,1031                'level': 2.0,1032                'mapOrModel': 1,1033                'resolution': 3.2,1034                'pdbFileToBeRefined': result,1035                # 'selectChain': True,1036                # 'selectStructureChain': self.chainID,1037                'removeResidues': True,1038                'inputStructureChain': self.chainID,1039                'firstResidueToRemove': self.FirstResidue,1040                'lastResidueToRemove': self.LastResidue,1041                'applySymmetry': True,1042                'symmetryGroup': CHIMERA_CYCLIC,1043                'symmetryOrder': 21044                }1045        protChimera9 = self.newProtocol(ChimeraSubtractionMaps, **args)1046        protChimera9.setObjLabel('chimera mask\n chainAB-sym-derived map\n'1047                                 'remove residues\nlevel 2.0\nno zone')1048        self.launchProtocol(protChimera9)1049        try:1050            result = eval(1051                "protChimera9.Atom_struct__3_%06d_cif.getFileName()"1052                % protChimera9.getObjId())1053        except:1054            self.assertTrue(False, "There was a problem with the alignment")1055        self.assertTrue(os.path.exists(result))1056        try:1057            result = eval(1058                "protChimera9.mutated_Atom_struct__3_%06d_cif.getFileName()"1059                % protChimera9.getObjId())1060        except:1061            self.assertTrue(False, "There was a problem with the alignment")1062        self.assertTrue(os.path.exists(result))1063        try:1064            result = eval(1065                "protChimera9.sym_Atom_struct__5_%06d_cif.getFileName()"1066                % protChimera9.getObjId())1067        except:1068            self.assertTrue(False, "There was a problem with the alignment")1069        self.assertTrue(os.path.exists(result))1070        try:1071            result = eval(1072                "protChimera9.molmap_Map__7_%06d.getFileName()"1073                % protChimera9.getObjId())1074        except:1075            self.assertTrue(False, "There was a problem with the alignment")1076        self.assertTrue(os.path.exists(result))1077        try:1078            result = eval(1079                "protChimera9.difference_Map__8_%06d.getFileName()"1080                % protChimera9.getObjId())1081        except:1082            self.assertTrue(False, "There was a problem with the alignment")1083        self.assertTrue(os.path.exists(result))1084        try:1085            result = eval(1086                "protChimera9.filtered_Map__9_%06d.getFileName()"1087                % protChimera9.getObjId())1088        except:1089            self.assertTrue(False, "There was a problem with the alignment")...

v2sc.py

Source:v2sc.py

1#-------------------------------------------------------------------------------2# codegen.py3#4# Code Generator from AST to Verilog HDL source code5#6# Copyright (C) 2013, Shinya Takamaeda-Yamazaki7# License: Apache 2.08#-------------------------------------------------------------------------------9from __future__ import absolute_import10from __future__ import print_function11import sys12import os13import math14import re15import functools16from jinja2 import Environment, FileSystemLoader17from optparse import OptionParser18sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__))))19import pyverilog.utils.version20from pyverilog.vparser.parser import VerilogCodeParser21#from pyverilog.ast_code_generator.codegen import ASTCodeGenerator22from pyverilog.vparser.ast import *23from pyverilog.utils.op2mark import op2mark24from pyverilog.utils.op2mark import op2order25DEFAULT_TEMPLATE_DIR = os.path.dirname(os.path.abspath(__file__)) + '/template/'26#-------------------------------------------------------------------------------27try:28    import textwrap29    indent = textwrap.indent30except:31    def indent(text, prefix, predicate=None):32        if predicate is None: predicate = lambda x: x and not x.isspace()33        ret = []34        for line in text.split('\n'):35            if predicate(line):36                ret.append(prefix)37            ret.append(line)38            ret.append('\n')39        return ''.join(ret[:-1])40def indent_multiline_assign(text):41    ret = []42    texts = text.split('\n')43    if len(texts) <= 1:44        return text45    try:46        p = texts[0].index('=')47    except:48        return text49    ret.append(texts[0])50    ret.append('\n')51    ret.append(indent('\n'.join(texts[1:]), ' ' * (p + 2)))52    return ''.join(ret)53#-------------------------------------------------------------------------------54class ConvertVisitor(object):55    def visit(self, node):56        method = 'visit_' + node.__class__.__name__57        visitor = getattr(self, method, self.visit_default)58        return visitor(node)59    def visit_default(self, node):60        ret = []61        for c in node.children():62            ret.append(self.visit(c))63        return ''.join(ret)64def getfilename(node, suffix=''):65    return node.__class__.__name__.lower() + suffix + '.txt'66def escape(s):67    if s.startswith('\\'):68        return s + ' '69    return s70def del_paren(s):71    if s.startswith('(') and s.endswith(')'):72        return s[1:-1]73    return s74def del_space(s):75    return s.replace(' ', '')76class ASTCodeGenerator(ConvertVisitor):77    def __init__(self, indentsize=4, clock_name='CLK', reset_name='RSTX'):78        self.env = Environment(loader=FileSystemLoader(DEFAULT_TEMPLATE_DIR))79        self.indent = functools.partial(indent, prefix=' '*indentsize)80        self.clock_name = clock_name81        self.reset_name = reset_name82    def visit_process(self, node):83        method = 'visit_' + node.__class__.__name__ + '_process'84        visitor = getattr(self, method, self.visit_none)85        return visitor(node)86    def visit_declaration(self, node):87        method = 'visit_' + node.__class__.__name__ + '_declaration'88        visitor = getattr(self, method, self.visit_none)89        return visitor(node)90    def visit_argument(self, node):91        method = 'visit_' + node.__class__.__name__ + '_argument'92        visitor = getattr(self, method, self.visit_none)93        return visitor(node)94    def visit_parameter(self, node):95        method = 'visit_' + node.__class__.__name__ + '_parameter'96        visitor = getattr(self, method, self.visit_none)97        return visitor(node)98    def visit_none(self, node):99        return ''100    def visit_Source(self, node):101        filename = getfilename(node)102        template = self.env.get_template(filename)103        template_dict = {104            'description' : self.visit(node.description),105            }106        rslt = template.render(template_dict)107        return rslt108    def visit_Description(self, node):109        filename = getfilename(node)110        template = self.env.get_template(filename)111        template_dict = {112            'definitions' : [ self.visit(definition) for definition in node.definitions ],113            }114        rslt = template.render(template_dict)115        return rslt116    def visit_ModuleDef(self, node):117        filename = getfilename(node)118        template = self.env.get_template(filename)119        portlist = self.indent(self.visit(node.portlist)) if node.portlist is not None else ''120        paramlist = [ self.visit(node.paramlist) ] if node.paramlist is not None else ()121        parameters = [ self.visit_parameter(item) for item in node.items ] if node.items else ()122        parameters += paramlist123        template_dict = {124            'modulename' : escape(node.name),125            'portlist' :  portlist,126            'parameters' : parameters,127            'declarationlist' : [ self.visit_declaration(item) for item in node.items ] if node.items else (),128            'processlist' : [ self.visit_process(item) for item in node.items ] if node.items else (),129            'items' : [ self.indent(self.visit(item)) for item in node.items ] if node.items else (),130            }131        rslt = template.render(template_dict)132        return rslt133    def visit_Paramlist(self, node):134        filename = getfilename(node)135        template = self.env.get_template(filename)136        params = [ self.visit_parameter(param).replace(';','') for param in node.params ]137        template_dict = {138            'params' : params,139            'len_params' : len(params),140            }141        rslt = template.render(template_dict)142        return rslt143    def visit_Paramlist_parameter(self, node):144        filename = getfilename(node)145        template = self.env.get_template(filename)146        params = [ self.visit_parameter(param).replace(';','') for param in node.params ]147        template_dict = {148            'params' : params,149            'len_params' : len(params),150            }151        rslt = template.render(template_dict)152        return rslt153    def visit_Portlist(self, node):154        filename = getfilename(node)155        template = self.env.get_template(filename)156        ports = [ self.visit(port) for port in node.ports ]157        template_dict = {158            'ports' : ports,159            'len_ports' : len(ports),160            }161        rslt = template.render(template_dict)162        return rslt163    def visit_Port(self, node):164        filename = getfilename(node)165        template = self.env.get_template(filename)166        template_dict = {167            'name' : escape(node.name),168            }169        rslt = template.render(template_dict)170        return rslt171    def visit_Width(self, node):172        filename = getfilename(node)173        template = self.env.get_template(filename)174        msb = del_space(del_paren(self.visit(node.msb)))175        lsb = del_space(del_paren(self.visit(node.lsb)))176        template_dict = {177            'width': eval( msb + '-' + lsb + '+1' ),178            }179        rslt = template.render(template_dict)180        return rslt181    def visit_Length(self, node):182        filename = getfilename(node)183        template = self.env.get_template(filename)184        msb = del_space(del_paren(self.visit(node.msb)))185        lsb = del_space(del_paren(self.visit(node.lsb)))186        template_dict = {187            'width': eval( msb + '-' + lsb + '+1' ),188            }189        rslt = template.render(template_dict)190        return rslt191    def visit_Identifier(self, node):192        filename = getfilename(node)193        template = self.env.get_template(filename)194        template_dict = {195            'name' : escape(node.name),196            'scope' : '' if node.scope is None else self.visit(node.scope).replace('.', '::'),197            }198        rslt = template.render(template_dict)199        return rslt200    def visit_Value(self, node):201        filename = getfilename(node)202        template = self.env.get_template(filename)203        template_dict = {204            'value' : node.value,205            }206        rslt = template.render(template_dict)207        return rslt208    def visit_Constant(self, node):209        filename = getfilename(node)210        template = self.env.get_template(filename)211        template_dict = {212            'value' : node.value,213            }214        rslt = template.render(template_dict)215        return rslt216    def visit_IntConst(self, node):217        filename = getfilename(node)218        template = self.env.get_template(filename)219        template_dict = {220            'value' : node.value,221            }222        rslt = template.render(template_dict)223        return rslt224    def visit_FloatConst(self, node):225        filename = getfilename(node)226        template = self.env.get_template(filename)227        template_dict = {228            'value' : node.value,229            }230        rslt = template.render(template_dict)231        return rslt232    def visit_StringConst(self, node):233        filename = getfilename(node)234        template = self.env.get_template(filename)235        template_dict = {236            'value' : node.value,237            }238        rslt = template.render(template_dict)239        return rslt240    def visit_Variable(self, node):241        filename = getfilename(node)242        template = self.env.get_template(filename)243        if node.width is None:244            width = '1'245            big = False246        else:247            width = self.visit(node.width)248            big = True if int(width) >= 64 else False249        template_dict = {250            'name' : escape(node.name),251            'width' : width,252            'signed' : node.signed,253            'big' : big,254            }255        rslt = template.render(template_dict)256        return rslt257    def visit_Input(self, node):258        filename = getfilename(node)259        template = self.env.get_template(filename)260        if node.width is None:261            width = '1'262            big = False263        else:264            width = self.visit(node.width)265            big = True if int(width) >= 64 else False266        template_dict = {267            'name' : escape(node.name),268            'width' : width,269            'signed' : node.signed,270            'big' : big,271            }272        rslt = template.render(template_dict)273        return rslt274    def visit_Input_argument(self, node):275        filename = getfilename(node, '_argument')276        template = self.env.get_template(filename)277        if node.width is None:278            width = '1'279            big = False280        else:281            width = self.visit(node.width)282            big = True if int(width) >= 64 else False283        template_dict = {284            'name' : escape(node.name),285            'width' : width,286            'signed' : node.signed,287            'big' : big,288            }289        rslt = template.render(template_dict)290        return rslt291    def visit_Output(self, node):292        filename = getfilename(node)293        template = self.env.get_template(filename)294        if node.width is None:295            width = '1'296            big = False297        else:298            width = self.visit(node.width)299            big = True if int(width) >= 64 else False300        template_dict = {301            'name' : escape(node.name),302            'width' : width,303            'signed' : node.signed,304            'big' : big,305            }306        rslt = template.render(template_dict)307        return rslt308    def visit_Output_argument(self, node):309        filename = getfilename(node, '_argument')310        template = self.env.get_template(filename)311        if node.width is None:312            width = '1'313            big = False314        else:315            width = self.visit(node.width)316            big = True if int(width) >= 64 else False317        template_dict = {318            'name' : escape(node.name),319            'width' : width,320            'signed' : node.signed,321            'big' : big,322            }323        rslt = template.render(template_dict)324        return rslt325    def visit_Inout(self, node):326        filename = getfilename(node)327        template = self.env.get_template(filename)328        if node.width is None:329            width = '1'330            big = False331        else:332            width = self.visit(node.width)333            big = True if int(width) >= 64 else False334        template_dict = {335            'name' : escape(node.name),336            'width' : width,337            'signed' : node.signed,338            'big' : big,339            }340        rslt = template.render(template_dict)341        return rslt342    def visit_Inout_argument(self, node):343        filename = getfilename(node, '_argument')344        template = self.env.get_template(filename)345        if node.width is None:346            width = '1'347            big = False348        else:349            width = self.visit(node.width)350            big = True if int(width) >= 64 else False351        template_dict = {352            'name' : escape(node.name),353            'width' : width,354            'signed' : node.signed,355            'big' : big,356            }357        rslt = template.render(template_dict)358        return rslt359    def visit_Tri(self, node):360        filename = getfilename(node)361        template = self.env.get_template(filename)362        if node.width is None:363            width = '1'364            big = False365        else:366            width = self.visit(node.width)367            big = True if int(width) >= 64 else False368        template_dict = {369            'name' : escape(node.name),370            'width' : width,371            'signed' : node.signed,372            'big' : big,373            }374        rslt = template.render(template_dict)375        return rslt376    def visit_Wire(self, node):377        filename = getfilename(node)378        template = self.env.get_template(filename)379        if node.width is None:380            width = '1'381            big = False382        else:383            width = self.visit(node.width)384            big = True if int(width) >= 64 else False385        template_dict = {386            'name' : escape(node.name),387            'width' : width,388            'signed' : node.signed,389            'big' : big,390            }391        rslt = template.render(template_dict)392        return rslt393    def visit_Reg(self, node):394        filename = getfilename(node)395        template = self.env.get_template(filename)396        if node.width is None:397            width = '1'398            big = False399        else:400            width = self.visit(node.width)401            big = True if int(width) >= 64 else False402        template_dict = {403            'name' : escape(node.name),404            'width' : width,405            'signed' : node.signed,406            'big' : big,407            }408        rslt = template.render(template_dict)409        return rslt410    def visit_WireArray(self, node):411        filename = getfilename(node)412        template = self.env.get_template(filename)413        if node.width is None:414            width = '1'415            big = False416        else:417            width = self.visit(node.width)418            big = True if int(width) >= 64 else False419        template_dict = {420            'name' : escape(node.name),421            'width' : width,422            'length' : self.visit(node.length),423            'signed' : node.signed,424            'big' : big,425            }426        rslt = template.render(template_dict)427        return rslt428    def visit_RegArray(self, node):429        filename = getfilename(node)430        template = self.env.get_template(filename)431        if node.width is None:432            width = '1'433            big = False434        else:435            width = self.visit(node.width)436            big = True if int(width) >= 64 else False437        template_dict = {438            'name' : escape(node.name),439            'width' : width,440            'length' : self.visit(node.length),441            'signed' : node.signed,442            'big' : big,443            }444        rslt = template.render(template_dict)445        return rslt446    def visit_Integer(self, node):447        filename = getfilename(node)448        template = self.env.get_template(filename)449        template_dict = {450            'name' : escape(node.name),451            'signed' : node.signed,452            }453        rslt = template.render(template_dict)454        return rslt455    def visit_Real(self, node):456        filename = getfilename(node)457        template = self.env.get_template(filename)458        template_dict = {459            'name' : escape(node.name),460            }461        rslt = template.render(template_dict)462        return rslt463    def visit_Genvar(self, node):464        filename = getfilename(node)465        template = self.env.get_template(filename)466        template_dict = {467            'name' : escape(node.name),468            }469        rslt = template.render(template_dict)470        return rslt471    def visit_Ioport(self, node):472        filename = getfilename(node)473        template = self.env.get_template(filename)474        template_dict = {475            'first' : self.visit(node.first),476            'second' : '' if node.second is None else self.visit(node.second),477            }478        rslt = template.render(template_dict)479        return rslt480    def visit_Parameter(self, node):481        filename = getfilename(node)482        template = self.env.get_template(filename)483        value = self.visit(node.value)484        if node.width is None:485            width = '1'486            big = False487        else:488            width = '' if (value.startswith('"') and value.endswith('"')) else self.visit(node.width)489            big = True if int(width) >= 64 else False490        template_dict = {491            'name' : escape(node.name),492            'width' : width,493            'value' : value,494            'signed' : node.signed,495            'big' : big,496            }497        rslt = template.render(template_dict)498        return rslt499    def visit_Localparam(self, node):500        filename = getfilename(node)501        template = self.env.get_template(filename)502        value = self.visit(node.value)503        template_dict = {504            'name' : escape(node.name),505            'width' : '' if node.width is None or (value.startswith('"') and value.endswith('"')) else self.visit(node.width),506            'value' : value,507            'signed' : node.signed,508            }509        rslt = template.render(template_dict)510        return rslt511    def visit_Decl(self, node):512        filename = getfilename(node)513        template = self.env.get_template(filename)514        template_dict = {515            'items' : [ self.visit(item) for item in node.list if item.__class__.__name__ != 'Parameter'],516            }517        rslt = template.render(template_dict)518        return rslt519    def visit_Decl_argument(self, node):520        filename = getfilename(node, '_argument')521        template = self.env.get_template(filename)522        items = [ self.visit_argument(item) for item in node.list if item.__class__.__name__ == 'Input' or item.__class__.__name__ == 'Output' or item.__class__.__name__ == 'Inout' ]523        template_dict = {524            'items' : items,525            'len_items' : len(items),526            }527        rslt = template.render(template_dict)528        return rslt529    def visit_Decl_parameter(self, node):530        filename = getfilename(node, '_parameter')531        template = self.env.get_template(filename)532        items = [ self.visit(item) for item in node.list if item.__class__.__name__ == 'Parameter' ]533        template_dict = {534            'items' : items,535            'len_items' : len(items),536            }537        rslt = template.render(template_dict)538        return rslt539    def visit_Concat(self, node):540        filename = getfilename(node)541        template = self.env.get_template(filename)542        items = [ del_paren(self.visit(item)) for item in node.list ]543        template_dict = {544            'items' : items,545            'len_items' : len(items),546            }547        rslt = template.render(template_dict)548        return rslt549    def visit_LConcat(self, node):550        filename = getfilename(node)551        template = self.env.get_template(filename)552        items = [ del_paren(self.visit(item)) for item in node.list ]553        template_dict = {554            'items' : items,555            'len_items' : len(items),556            }557        rslt = template.render(template_dict)558        return rslt559    def visit_Repeat(self, node):560        filename = getfilename(node)561        template = self.env.get_template(filename)562        template_dict = {563            'value' : del_paren(self.visit(node.value)),564            'times' : del_paren(self.visit(node.times)),565            }566        rslt = template.render(template_dict)567        return rslt568    def visit_Partselect(self, node):569        filename = getfilename(node)570        template = self.env.get_template(filename)571        template_dict = {572            'var' : self.visit(node.var),573            'msb' : del_space(del_paren(self.visit(node.msb))),574            'lsb' : del_space(del_paren(self.visit(node.lsb))),575            }576        rslt = template.render(template_dict)577        return rslt578    def visit_Pointer(self, node):579        filename = getfilename(node)580        template = self.env.get_template(filename)581        template_dict = {582            'var' : self.visit(node.var),583            'ptr' : del_paren(self.visit(node.ptr)),584            }585        rslt = template.render(template_dict)586        return rslt587    def visit_Lvalue(self, node):588        filename = getfilename(node)589        template = self.env.get_template(filename)590        template_dict = {591            'var' : del_paren(self.visit(node.var)),592            }593        rslt = template.render(template_dict)594        return rslt595    def visit_Rvalue(self, node):596        filename = getfilename(node)597        template = self.env.get_template(filename)598        template_dict = {599            'var' : del_paren(self.visit(node.var)),600            }601        rslt = template.render(template_dict)602        return rslt603    def visit_Operator(self, node):604        filename = getfilename(node)605        template = self.env.get_template(filename)606        order = op2order(node.__class__.__name__)607        lorder = op2order(node.left.__class__.__name__)608        rorder = op2order(node.right.__class__.__name__)609        left = self.visit(node.left)610        right = self.visit(node.right)611        if ((not isinstance(node.left, (Sll, Srl, Sra,612                                        LessThan, GreaterThan, LessEq, GreaterEq,613                                        Eq, NotEq, Eql, NotEql))) and614            (lorder is not None and lorder <= order)):615            left = del_paren(left)616        if ((not isinstance(node.right, (Sll, Srl, Sra,617                                         LessThan, GreaterThan, LessEq, GreaterEq,618                                         Eq, NotEq, Eql, NotEql))) and619            (rorder is not None and order > rorder)):620            right = del_paren(right)621        template_dict = {622            'left' : left,623            'right' : right,624            'op' : op2mark(node.__class__.__name__),625            }626        rslt = template.render(template_dict)627        return rslt628    def visit_UnaryOperator(self, node):629        filename = getfilename(node)630        template = self.env.get_template(filename)631        right = self.visit(node.right)632        template_dict = {633            'right' : right,634            'op' : op2mark(node.__class__.__name__),635            }636        rslt = template.render(template_dict)637        return rslt638    def visit_Uplus(self, node):639        return self.visit_UnaryOperator(node)640    def visit_Uminus(self, node):641        return self.visit_UnaryOperator(node)642    def visit_Ulnot(self, node):643        return self.visit_UnaryOperator(node)644    def visit_Unot(self, node):645        return self.visit_UnaryOperator(node)646    def visit_Uand(self, node):647        return self.visit_UnaryOperator(node)648    def visit_Unand(self, node):649        return self.visit_UnaryOperator(node)650    def visit_Uor(self, node):651        return self.visit_UnaryOperator(node)652    def visit_Unor(self, node):653        return self.visit_UnaryOperator(node)654    def visit_Uxor(self, node):655        return self.visit_UnaryOperator(node)656    def visit_Uxnor(self, node):657        return self.visit_UnaryOperator(node)658    def visit_Power(self, node):659        return self.visit_Operator(node)660    def visit_Times(self, node):661        return self.visit_Operator(node)662    def visit_Divide(self, node):663        return self.visit_Operator(node)664    def visit_Mod(self, node):665        return self.visit_Operator(node)666    def visit_Plus(self, node):667        return self.visit_Operator(node)668    def visit_Minus(self, node):669        return self.visit_Operator(node)670    def visit_Sll(self, node):671        return self.visit_Operator(node)672    def visit_Srl(self, node):673        return self.visit_Operator(node)674    def visit_Sra(self, node):675        return self.visit_Operator(node)676    def visit_LessThan(self, node):677        return self.visit_Operator(node)678    def visit_GreaterThan(self, node):679        return self.visit_Operator(node)680    def visit_LessEq(self, node):681        return self.visit_Operator(node)682    def visit_GreaterEq(self, node):683        return self.visit_Operator(node)684    def visit_Eq(self, node):685        return self.visit_Operator(node)686    def visit_NotEq(self, node):687        return self.visit_Operator(node)688    def visit_Eql(self, node):689        return self.visit_Operator(node)690    def visit_NotEql(self, node):691        return self.visit_Operator(node)692    def visit_And(self, node):693        return self.visit_Operator(node)694    def visit_Xor(self, node):695        return self.visit_Operator(node)696    def visit_Xnor(self, node):697        return self.visit_Operator(node)698    def visit_Or(self, node):699        return self.visit_Operator(node)700    def visit_Land(self, node):701        return self.visit_Operator(node)702    def visit_Lor(self, node):703        return self.visit_Operator(node)704    def visit_Cond(self, node):705        filename = getfilename(node)706        template = self.env.get_template(filename)707        true_value = del_paren(self.visit(node.true_value))708        false_value = del_paren(self.visit(node.false_value))709        if isinstance(node.false_value, Cond):710            false_value = ''.join( ['\n', false_value] )711        template_dict = {712            'cond' : del_paren(self.visit(node.cond)),713            'true_value' : true_value,714            'false_value' : false_value,715            }716        rslt = template.render(template_dict)717        return rslt718    def visit_Assign(self, node):719        filename = getfilename(node)720        template = self.env.get_template(filename)721        template_dict = {722            'left' : self.visit(node.left),723            'right' : self.visit(node.right),724            }725        rslt = template.render(template_dict)726        rslt = indent_multiline_assign(rslt)727        return rslt728    def visit_Always(self, node):729        filename = getfilename(node)730        template = self.env.get_template(filename)731        template_dict = {732            'lineno' : str(node.lineno),733            'statement' : self.visit(node.statement),734            }735        rslt = template.render(template_dict)736        return rslt737    def visit_Always_process(self, node):738        filename = getfilename(node, '_process')739        template = self.env.get_template(filename)740        clock_sens = ''741        reset_sens = ''742        for sens in node.sens_list.list:743            if sens.sig.name == self.clock_name:744                clock_sens = self.visit(sens)745            if sens.sig.name == self.reset_name:746                reset_sens = self.visit(sens)747                reset_sens = reset_sens.replace('.pos()', ', true')748                reset_sens = reset_sens.replace('.neg()', ', false')749        template_dict = {750            'lineno' : str(node.lineno),751            'clock_sens' : clock_sens,752            'reset_sens' : reset_sens,753            'sens_list' : self.visit(node.sens_list),754            }755        rslt = template.render(template_dict)756        return rslt757    def visit_Always_declaration(self, node):758        filename = getfilename(node, '_declaration')759        template = self.env.get_template(filename)760        template_dict = {761            'lineno' : str(node.lineno),762            }763        rslt = template.render(template_dict)764        return rslt765    def visit_SensList(self, node):766        filename = getfilename(node)767        template = self.env.get_template(filename)768        items = [ self.visit(item) for item in node.list if item.sig.name != self.clock_name and item.sig.name != self.reset_name]769        template_dict = {770            'items' : items,771            'len_items' : len(items),772            }773        rslt = template.render(template_dict)774        return rslt775    def visit_Sens(self, node):776        filename = getfilename(node)777        template = self.env.get_template(filename)778        template_dict = {779            'sig' : '*' if node.type == 'all' else self.visit(node.sig),780            'type' : node.type[0:3] if node.type == 'posedge' or node.type == 'negedge' else ''781            }782        rslt = template.render(template_dict)783        return rslt784    def visit_Substitution(self, node):785        filename = getfilename(node)786        template = self.env.get_template(filename)787        template_dict = {788            'left' : self.visit(node.left),789            'right' : self.visit(node.right),790            'ldelay' : '' if node.ldelay is None else self.visit(node.ldelay),791            'rdelay' : '' if node.rdelay is None else self.visit(node.rdelay),792            }793        rslt = template.render(template_dict)794        rslt = indent_multiline_assign(rslt)795        return rslt796    def visit_BlockingSubstitution(self, node):797        filename = getfilename(node)798        template = self.env.get_template(filename)799        template_dict = {800            'left' : self.visit(node.left),801            'right' : self.visit(node.right),802            'ldelay' : '' if node.ldelay is None else self.visit(node.ldelay),803            'rdelay' : '' if node.rdelay is None else self.visit(node.rdelay),804            }805        rslt = template.render(template_dict)806        rslt = indent_multiline_assign(rslt)807        return rslt808    def visit_NonblockingSubstitution(self, node):809        filename = getfilename(node)810        template = self.env.get_template(filename)811        template_dict = {812            'left' : self.visit(node.left),813            'right' : self.visit(node.right),814            'ldelay' : '' if node.ldelay is None else self.visit(node.ldelay),815            'rdelay' : '' if node.rdelay is None else self.visit(node.rdelay),816            }817        rslt = template.render(template_dict)818        rslt = indent_multiline_assign(rslt)819        return rslt820    def visit_IfStatement(self, node):821        filename = getfilename(node)822        template = self.env.get_template(filename)823        true_statement = '' if node.true_statement is None else self.visit(node.true_statement)824        false_statement = '' if node.false_statement is None else self.visit(node.false_statement)825        template_dict = {826            'cond' : del_paren(self.visit(node.cond)),827            'true_statement' : true_statement,828            'false_statement' : false_statement,829            }830        rslt = template.render(template_dict)831        return rslt832    def visit_ForStatement(self, node):833        filename = getfilename(node)834        template = self.env.get_template(filename)835        template_dict = {836            'pre' : '' if node.pre is None else self.visit(node.pre),837            'cond' : '' if node.cond is None else del_paren(self.visit(node.cond)),838            'post' : '' if node.post is None else self.visit(node.post).replace(';', ''),839            'statement' : '' if node.statement is None else self.visit(node.statement),840            }841        rslt = template.render(template_dict)842        return rslt843    def visit_WhileStatement(self, node):844        filename = getfilename(node)845        template = self.env.get_template(filename)846        template_dict = {847            'cond' : '' if node.cond is None else del_paren(self.visit(node.cond)),848            'statement' : '' if node.statement is None else self.visit(node.statement),849            }850        rslt = template.render(template_dict)851        return rslt852    def visit_CaseStatement(self, node):853        filename = getfilename(node)854        template = self.env.get_template(filename)855        template_dict = {856            'comp' : del_paren(self.visit(node.comp)),857            'caselist' : [ self.indent(self.visit(case)) for case in node.caselist ],858            }859        rslt = template.render(template_dict)860        return rslt861    def visit_CasexStatement(self, node):862        filename = getfilename(node)863        template = self.env.get_template(filename)864        template_dict = {865            'comp' : del_paren(self.visit(node.comp)),866            'caselist' : [ self.indent(self.visit(case)) for case in node.caselist ],867            }868        rslt = template.render(template_dict)869        return rslt870    def visit_Case(self, node):871        filename = getfilename(node)872        template = self.env.get_template(filename)873        condlist = [ 'default' ] if node.cond is None else [ del_paren(self.visit(c)) for c in node.cond ]874        template_dict = {875            'condlist' : condlist,876            'statement' : self.visit(node.statement),877            }878        rslt = template.render(template_dict)879        return rslt880    def visit_Block(self, node):881        filename = getfilename(node)882        template = self.env.get_template(filename)883        template_dict = {884            'scope' : '' if node.scope is None else escape(node.scope),885            'statements' : [ self.indent(self.visit(statement)) for statement in node.statements ],886            }887        rslt = template.render(template_dict)888        return rslt889    def visit_Initial(self, node):890        filename = getfilename(node)891        template = self.env.get_template(filename)892        template_dict = {893            'name' : 'initial_at_line_' + str(node.lineno),894            'statement' : self.visit(node.statement),895            }896        rslt = template.render(template_dict)897        return rslt898    def visit_Initial_process(self, node):899        filename = getfilename(node, '_process')900        template = self.env.get_template(filename)901        template_dict = {902            'name' : 'initial_at_line_' + str(node.lineno),903            }904        rslt = template.render(template_dict)905        return rslt906    def visit_Initial_declaration(self, node):907        filename = getfilename(node, '_declaration')908        template = self.env.get_template(filename)909        template_dict = {910            'name' : 'initial_at_line_' + str(node.lineno),911            }912        rslt = template.render(template_dict)913        return rslt914    def visit_EventStatement(self, node):915        filename = getfilename(node)916        template = self.env.get_template(filename)917        template_dict = {918            'senslist': del_paren(self.visit(node.senslist)),919            }920        rslt = template.render(template_dict)921        return rslt922    def visit_WaitStatement(self, node):923        filename = getfilename(node)924        template = self.env.get_template(filename)925        template_dict = {926            'cond': del_paren(self.visit(node.cond)),927            'statement' : self.visit(node.statement) if node.statement else '',928            }929        rslt = template.render(template_dict)930        return rslt931    def visit_ForeverStatement(self, node):932        filename = getfilename(node)933        template = self.env.get_template(filename)934        template_dict = {935            'statement' : self.visit(node.statement),936            }937        rslt = template.render(template_dict)938        return rslt939    def visit_DelayStatement(self, node):940        filename = getfilename(node)941        template = self.env.get_template(filename)942        template_dict = {943            'delay' : self.visit(node.delay),944            }945        rslt = template.render(template_dict)946        return rslt947    def visit_InstanceList(self, node):948        filename = getfilename(node)949        template = self.env.get_template(filename)950        parameterlist = [ self.indent(self.visit(param)) for param in node.parameterlist ]951        instances = [ self.visit(instance) for instance in node.instances ]952        template_dict = {953            'module' : escape(node.module),954            'parameterlist' : parameterlist,955            'len_parameterlist' : len(parameterlist),956            'instances' : instances,957            'len_instances' : len(instances),958            }959        rslt = template.render(template_dict)960        return rslt961    def visit_Instance(self, node):962        filename = getfilename(node)963        template = self.env.get_template(filename)964        array = '' if node.array is None else self.visit(node.array)965        portlist = [ self.indent(self.visit(port)) for port in node.portlist ]966        template_dict = {967            'name' : escape(node.name),968            'array' : array,969            'portlist' : portlist,970            'len_portlist' : len(portlist),971            }972        rslt = template.render(template_dict)973        return rslt974    def visit_ParamArg(self, node):975        filename = getfilename(node)976        template = self.env.get_template(filename)977        template_dict = {978            'paramname' : '' if node.paramname is None else escape(node.paramname),979            'argname' : '' if node.argname is None else del_paren(self.visit(node.argname)),980            }981        rslt = template.render(template_dict)982        return rslt983    def visit_PortArg(self, node):984        filename = getfilename(node)985        template = self.env.get_template(filename)986        template_dict = {987            'portname' : '' if node.portname is None else escape(node.portname),988            'argname' : '' if node.argname is None else del_paren(self.visit(node.argname)),989            }990        rslt = template.render(template_dict)991        return rslt992    def visit_Function(self, node):993        filename = getfilename(node)994        template = self.env.get_template(filename)995        arguments = [ self.visit_argument(s) for s in node.statement ]996        statements = [ self.visit(s) for s in node.statement ]997        statements = [ statement for statement in statements if not statement.startswith('sc_in<') and not statement.startswith('sc_out<') and not statement.startswith('sc_inout<') ]998        template_dict = {999            'name' : escape(node.name),1000            'lineno' : str(node.lineno),1001            'retwidth' : self.visit(node.retwidth),1002            'arguments' : arguments,1003            'statements' : statements,1004            }1005        rslt = template.render(template_dict)1006        return rslt1007    def visit_Function_declaration(self, node):1008        filename = getfilename(node, '_declaration')1009        template = self.env.get_template(filename)1010        arguments = [ self.visit_argument(s) for s in node.statement ]1011        statements = [ self.indent(self.visit(s)) for s in node.statement ]1012        template_dict = {1013            'name' : escape(node.name),1014            'lineno' : str(node.lineno),1015            'retwidth' : self.visit(node.retwidth),1016            'arguments' : arguments,1017            'statements' : statements,1018            }1019        rslt = template.render(template_dict)1020        return rslt1021    def visit_FunctionCall(self, node):1022        filename = getfilename(node)1023        template = self.env.get_template(filename)1024        args = [ self.visit(arg) for arg in node.args ]1025        template_dict = {1026            'name' : self.visit(node.name),1027            'lineno' : str(node.lineno),1028            'args' : args,1029            'len_args' : len(args),1030            }1031        rslt = template.render(template_dict)1032        return rslt1033    def visit_Task(self, node):1034        filename = getfilename(node)1035        template = self.env.get_template(filename)1036        statement = [ self.indent(self.visit(s)) for s in node.statement ]1037        template_dict = {1038            'name' : escape(node.name),1039            'statement' : statement,1040            }1041        rslt = template.render(template_dict)1042        return rslt1043    #def visit_TaskCall(self, node):1044    #    filename = getfilename(node)1045    #    template = self.env.get_template(filename)1046    #    args = [ self.visit(arg) for arg in node.args ]1047    #    template_dict = {1048    #        'name' : self.visit(node.name),1049    #        'args' : args,1050    #        'len_args' : len(args),1051    #        }1052    #    rslt = template.render(template_dict)1053    #    return rslt1054    def visit_GenerateStatement(self, node):1055        filename = getfilename(node)1056        template = self.env.get_template(filename)1057        template_dict = {1058            'items' : [ self.visit(item) for item in node.items ]1059            }1060        rslt = template.render(template_dict)1061        return rslt1062    def visit_SystemCall(self, node):1063        filename = getfilename(node)1064        template = self.env.get_template(filename)1065        args = [ self.visit(arg) for arg in node.args ]1066        template_dict = {1067            'syscall' : escape(node.syscall),1068            'args' : args,1069            'len_args' : len(args),1070            }1071        rslt = template.render(template_dict)1072        return rslt1073    def visit_IdentifierScopeLabel(self, node):1074        filename = getfilename(node)1075        template = self.env.get_template(filename)1076        template_dict = {1077            'name' : escape(node.name),1078            'loop' : '' if node.loop is None else self.visit(node.loop),1079            }1080        rslt = template.render(template_dict)1081        return rslt1082    def visit_IdentifierScope(self, node):1083        filename = getfilename(node)1084        template = self.env.get_template(filename)1085        scopes = [ self.visit(scope) for scope in node.labellist ]1086        template_dict = {1087            'scopes' : scopes,1088            }1089        rslt = template.render(template_dict)1090        return rslt1091    def visit_Pragma(self, node):1092        filename = getfilename(node)1093        template = self.env.get_template(filename)1094        template_dict = {1095            'entry' : self.visit(node.entry),1096            }1097        rslt = template.render(template_dict)1098        return rslt1099    def visit_PragmaEntry(self, node):1100        filename = getfilename(node)1101        template = self.env.get_template(filename)1102        template_dict = {1103            'name' : escape(node.name),1104            'value' : '' if node.value is None else self.visit(node.value),1105            }1106        rslt = template.render(template_dict)1107        return rslt1108    def visit_Disable(self, node):1109        filename = getfilename(node)1110        template = self.env.get_template(filename)1111        template_dict = {1112            'name' : escape(node.dest),1113            }1114        rslt = template.render(template_dict)1115        return rslt1116    def visit_ParallelBlock(self, node):1117        filename = getfilename(node)1118        template = self.env.get_template(filename)1119        template_dict = {1120            'scope' : '' if node.scope is None else escape(node.scope),1121            'statements' : [ self.indent(self.visit(statement)) for statement in node.statements ],1122            }1123        rslt = template.render(template_dict)1124        return rslt1125    def visit_SingleStatement(self, node):1126        filename = getfilename(node)1127        template = self.env.get_template(filename)1128        template_dict = {1129            'statement' : self.visit(node.statement),1130            }1131        rslt = template.render(template_dict)1132        return rslt1133def main():1134    INFO = "Code converter from AST"1135    VERSION = pyverilog.utils.version.VERSION1136    USAGE = "Usage: python example_codegen.py file ..."1137    def showVersion():1138        print(INFO)1139        print(VERSION)1140        print(USAGE)1141        sys.exit()1142    optparser = OptionParser()1143    optparser.add_option("-v","--version",action="store_true",dest="showversion",1144                         default=False,help="Show the version")1145    optparser.add_option("-I","--include",dest="include",action="append",1146                         default=[],help="Include path")1147    optparser.add_option("-D",dest="define",action="append",1148                         default=[],help="Macro Definition")1149    (options, args) = optparser.parse_args()1150    filelist = args1151    if options.showversion:1152        showVersion()1153    for f in filelist:1154        if not os.path.exists(f): raise IOError("file not found: " + f)1155    if len(filelist) == 0:1156        showVersion()1157    codeparser = VerilogCodeParser(filelist,1158                                   preprocess_include=options.include,1159                                   preprocess_define=options.define)1160    ast = codeparser.parse()1161    directives = codeparser.get_directives()1162    ast.show();1163    codegen = ASTCodeGenerator()1164    rslt = codegen.visit(ast)1165    print(rslt)1166if __name__ == '__main__':...

codegen.py

Source:codegen.py

1#-------------------------------------------------------------------------------2# codegen.py3# 4# Code Generator from AST to Verilog HDL source code5#6# Copyright (C) 2013, Shinya Takamaeda-Yamazaki7# License: Apache 2.08#-------------------------------------------------------------------------------9import sys10import os11import math12import re13from jinja2 import Environment, FileSystemLoader14sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) )15import pyverilog.utils.version16from pyverilog.vparser.parser import VerilogCodeParser17from pyverilog.vparser.ast import *18from pyverilog.utils.op2mark import op2mark19DEFAULT_TEMPLATE_DIR = os.path.dirname(os.path.abspath(__file__)) + '/template/'20class ConvertVisitor(object):21    def visit(self, node):22        method = 'visit_' + node.__class__.__name__23        visitor = getattr(self, method, self.generic_visit)24        return visitor(node)25    def generic_visit(self, node):26        ret = []27        for c in node.children():28            ret.append(self.visit(c))29        return ''.join(ret)30def getfilename(node):31    return node.__class__.__name__.lower() + '.txt'32class ASTCodeGenerator(ConvertVisitor):33    def __init__(self):34        self.env = Environment(loader=FileSystemLoader(DEFAULT_TEMPLATE_DIR))35    def visit_Source(self, node):36        filename = getfilename(node)37        template = self.env.get_template(filename)38        template_dict = {39            'description' : self.visit(node.description),40            }41        rslt = template.render(template_dict)42        return rslt43    def visit_Description(self, node):44        filename = getfilename(node)45        template = self.env.get_template(filename)46        template_dict = {47            'definitions':[self.visit(definition) for definition in node.definitions],48            }49        rslt = template.render(template_dict)50        return rslt51    def visit_ModuleDef(self, node):52        filename = getfilename(node)53        template = self.env.get_template(filename)54        paramlist = self.visit(node.paramlist)55        template_dict = {56            'modulename' : node.name,57            'paramlist' : '' if len(node.paramlist.params) == 0 else paramlist,58            'portlist' : self.visit(node.portlist),59            'items' : [ self.visit(item) for item in node.items ],60            }61        rslt = template.render(template_dict)62        return rslt63        64    def visit_Paramlist(self, node):65        filename = getfilename(node)66        template = self.env.get_template(filename)67        params = [ self.visit(param).replace(';','') for param in node.params ]68        template_dict = {69            'params' : params,70            'len_params' : len(params),71            }72        rslt = template.render(template_dict)73        return rslt74    def visit_Portlist(self, node):75        filename = getfilename(node)76        template = self.env.get_template(filename)77        ports = [ self.visit(port) for port in node.ports ]78        template_dict = {79            'ports' : ports,80            'len_ports' : len(ports),81            }82        rslt = template.render(template_dict)83        return rslt84    def visit_Port(self, node):85        filename = getfilename(node)86        template = self.env.get_template(filename)87        template_dict = {88            'name' : node.name,89            }90        rslt = template.render(template_dict)91        return rslt92    def visit_Width(self, node):93        filename = getfilename(node)94        template = self.env.get_template(filename)95        template_dict = {96            'msb' : self.visit(node.msb),97            'lsb' : self.visit(node.lsb),98            }99        rslt = template.render(template_dict)100        return rslt101        102    def visit_Length(self, node):103        filename = getfilename(node)104        template = self.env.get_template(filename)105        template_dict = {106            'msb' : self.visit(node.msb),107            'lsb' : self.visit(node.lsb),108            }109        rslt = template.render(template_dict)110        return rslt111        112    def visit_Identifier(self, node):113        filename = getfilename(node)114        template = self.env.get_template(filename)115        template_dict = {116            'name' : node.name,117            'scope' : '' if node.scope is None else self.visit(node.scope),118            }119        rslt = template.render(template_dict)120        return rslt121        122    def visit_Value(self, node):123        filename = getfilename(node)124        template = self.env.get_template(filename)125        template_dict = {126            'value' : node.value,127            }128        rslt = template.render(template_dict)129        return rslt130    def visit_Constant(self, node):131        filename = getfilename(node)132        template = self.env.get_template(filename)133        template_dict = {134            'value' : node.value,135            }136        rslt = template.render(template_dict)137        return rslt138    def visit_IntConst(self, node):139        filename = getfilename(node)140        template = self.env.get_template(filename)141        template_dict = {142            'value' : node.value,143            }144        rslt = template.render(template_dict)145        return rslt146    def visit_FloatConst(self, node):147        filename = getfilename(node)148        template = self.env.get_template(filename)149        template_dict = {150            'value' : node.value,151            }152        rslt = template.render(template_dict)153        return rslt154    def visit_StringConst(self, node):155        filename = getfilename(node)156        template = self.env.get_template(filename)157        template_dict = {158            'value' : node.value,159            }160        rslt = template.render(template_dict)161        return rslt162    def visit_Variable(self, node):163        filename = getfilename(node)164        template = self.env.get_template(filename)165        template_dict = {166            'name' : node.name,167            'width' : '' if node.width is None else self.visit(node.width),168            'signed' : node.signed,169            }170        rslt = template.render(template_dict)171        return rslt172        173    def visit_Input(self, node):174        filename = getfilename(node)175        template = self.env.get_template(filename)176        template_dict = {177            'name' : node.name,178            'width' : '' if node.width is None else self.visit(node.width),179            'signed' : node.signed,180            }181        rslt = template.render(template_dict)182        return rslt183    def visit_Output(self, node):184        filename = getfilename(node)185        template = self.env.get_template(filename)186        template_dict = {187            'name' : node.name,188            'width' : '' if node.width is None else self.visit(node.width),189            'signed' : node.signed,190            }191        rslt = template.render(template_dict)192        return rslt193    def visit_Inout(self, node):194        filename = getfilename(node)195        template = self.env.get_template(filename)196        template_dict = {197            'name' : node.name,198            'width' : '' if node.width is None else self.visit(node.width),199            'signed' : node.signed,200            }201        rslt = template.render(template_dict)202        return rslt203    def visit_Tri(self, node):204        filename = getfilename(node)205        template = self.env.get_template(filename)206        template_dict = {207            'name' : node.name,208            'width' : '' if node.width is None else self.visit(node.width),209            'signed' : node.signed,210            }211        rslt = template.render(template_dict)212        return rslt213    def visit_Wire(self, node):214        filename = getfilename(node)215        template = self.env.get_template(filename)216        template_dict = {217            'name' : node.name,218            'width' : '' if node.width is None else self.visit(node.width),219            'signed' : node.signed,220            }221        rslt = template.render(template_dict)222        return rslt223    def visit_Reg(self, node):224        filename = getfilename(node)225        template = self.env.get_template(filename)226        template_dict = {227            'name' : node.name,228            'width' : '' if node.width is None else self.visit(node.width),229            'signed' : node.signed,230            }231        rslt = template.render(template_dict)232        return rslt233    def visit_WireArray(self, node):234        filename = getfilename(node)235        template = self.env.get_template(filename)236        template_dict = {237            'name' : node.name,238            'width' : '' if node.width is None else self.visit(node.width),239            'length' : self.visit(node.length),240            'signed' : node.signed,241            }242        rslt = template.render(template_dict)243        return rslt244    def visit_RegArray(self, node):245        filename = getfilename(node)246        template = self.env.get_template(filename)247        template_dict = {248            'name' : node.name,249            'width' : '' if node.width is None else self.visit(node.width),250            'length' : self.visit(node.length),251            'signed' : node.signed,252            }253        rslt = template.render(template_dict)254        return rslt255    def visit_Integer(self, node):256        filename = getfilename(node)257        template = self.env.get_template(filename)258        template_dict = {259            'name' : node.name,260            'signed' : node.signed,261            }262        rslt = template.render(template_dict)263        return rslt264    def visit_Real(self, node):265        filename = getfilename(node)266        template = self.env.get_template(filename)267        template_dict = {268            'name' : node.name,269            }270        rslt = template.render(template_dict)271        return rslt272    def visit_Genvar(self, node):273        filename = getfilename(node)274        template = self.env.get_template(filename)275        template_dict = {276            'name' : node.name,277            }278        rslt = template.render(template_dict)279        return rslt280    def visit_Ioport(self, node):281        filename = getfilename(node)282        template = self.env.get_template(filename)283        template_dict = {284            'first' : node.first.__class__.__name__.lower(),285            'second' : '' if node.second is None else node.second.__class__.__name__.lower(),286            'name' : node.first.name,287            'width' : '' if node.first.width is None else self.visit(node.first.width),288            }289        rslt = template.render(template_dict)290        return rslt291    def visit_Parameter(self, node):292        filename = getfilename(node)293        template = self.env.get_template(filename)294        value = self.visit(node.value)295        template_dict = {296            'name' : node.name,297            'width' : '' if node.width is None or (value.startswith('"') and value.endswith('"')) else self.visit(node.width),298            'value' : value,299            'signed' : node.signed,300            }301        rslt = template.render(template_dict)302        return rslt303        304    def visit_Localparam(self, node):305        filename = getfilename(node)306        template = self.env.get_template(filename)307        value = self.visit(node.value)308        template_dict = {309            'name' : node.name,310            'width' : '' if node.width is None or (value.startswith('"') and value.endswith('"')) else self.visit(node.width),311            'value' : value,312            'signed' : node.signed,313            }314        rslt = template.render(template_dict)315        return rslt316    def visit_Decl(self, node):317        filename = getfilename(node)318        template = self.env.get_template(filename)319        template_dict = {320            'items' : [ self.visit(item) for item in node.list ],321            }322        rslt = template.render(template_dict)323        return rslt324    def visit_Concat(self, node):325        filename = getfilename(node)326        template = self.env.get_template(filename)327        items = [ self.visit(item) for item in node.list ]328        template_dict = {329            'items' : items,330            'len_items' : len(items),331            }332        rslt = template.render(template_dict)333        return rslt334    def visit_LConcat(self, node):335        filename = getfilename(node)336        template = self.env.get_template(filename)337        items = [ self.visit(item) for item in node.list ]338        template_dict = {339            'items' : items,340            'len_items' : len(items),341            }342        rslt = template.render(template_dict)343        return rslt344    def visit_Repeat(self, node):345        filename = getfilename(node)346        template = self.env.get_template(filename)347        template_dict = {348            'value' : self.visit(node.value),349            'times' : self.visit(node.times),350            }351        rslt = template.render(template_dict)352        return rslt353        354    def visit_Partselect(self, node):355        filename = getfilename(node)356        template = self.env.get_template(filename)357        template_dict = {358            'var' : self.visit(node.var),359            'msb' : self.visit(node.msb),360            'lsb' : self.visit(node.lsb),361            }362        rslt = template.render(template_dict)363        return rslt364        365    def visit_Pointer(self, node):366        filename = getfilename(node)367        template = self.env.get_template(filename)368        template_dict = {369            'var' : self.visit(node.var),370            'ptr' : self.visit(node.ptr),371            }372        rslt = template.render(template_dict)373        return rslt374    def visit_Lvalue(self, node):375        filename = getfilename(node)376        template = self.env.get_template(filename)377        template_dict = {378            'var' : self.visit(node.var),379            }380        rslt = template.render(template_dict)381        return rslt382    def visit_Rvalue(self, node):383        filename = getfilename(node)384        template = self.env.get_template(filename)385        template_dict = {386            'var' : self.visit(node.var),387            }388        rslt = template.render(template_dict)389        return rslt390    def visit_Operator(self, node):391        filename = getfilename(node)392        template = self.env.get_template(filename)393        template_dict = {394            'left' : self.visit(node.left),395            'right' : self.visit(node.right),396            'op' : op2mark(node.__class__.__name__),397            }398        rslt = template.render(template_dict)399        return rslt400    def visit_UnaryOperator(self, node):401        filename = getfilename(node)402        template = self.env.get_template(filename)403        template_dict = {404            'right' : self.visit(node.right),405            'op' : op2mark(node.__class__.__name__),406            }407        rslt = template.render(template_dict)408        return rslt409    def visit_Uplus(self, node):410        return self.visit_UnaryOperator(node)411    def visit_Uminus(self, node):412        return self.visit_UnaryOperator(node)413    def visit_Ulnot(self, node):414        return self.visit_UnaryOperator(node)415    def visit_Unot(self, node):416        return self.visit_UnaryOperator(node)417    def visit_Uand(self, node):418        return self.visit_UnaryOperator(node)419        420    def visit_Unand(self, node):421        return self.visit_UnaryOperator(node)422    def visit_Uor(self, node):423        return self.visit_UnaryOperator(node)424        425    def visit_Unor(self, node):426        return self.visit_UnaryOperator(node)427    def visit_Uxor(self, node):428        return self.visit_UnaryOperator(node)429    def visit_Uxnor(self, node):430        return self.visit_UnaryOperator(node)431    def visit_Power(self, node):432        return self.visit_Operator(node)433    def visit_Times(self, node):434        return self.visit_Operator(node)435    def visit_Divide(self, node):436        return self.visit_Operator(node)437    def visit_Mod(self, node):438        return self.visit_Operator(node)439    def visit_Plus(self, node):440        return self.visit_Operator(node)441    def visit_Minus(self, node):442        return self.visit_Operator(node)443    def visit_Sll(self, node):444        return self.visit_Operator(node)445    def visit_Srl(self, node):446        return self.visit_Operator(node)447    def visit_Sra(self, node):448        return self.visit_Operator(node)449    def visit_LessThan(self, node):450        return self.visit_Operator(node)451    def visit_GreaterThan(self, node):452        return self.visit_Operator(node)453    def visit_LessEq(self, node):454        return self.visit_Operator(node)455    def visit_GreaterEq(self, node):456        return self.visit_Operator(node)457    def visit_Eq(self, node):458        return self.visit_Operator(node)459    def visit_NotEq(self, node):460        return self.visit_Operator(node)461    def visit_Eql(self, node):462        return self.visit_Operator(node)463    def visit_NotEql(self, node):464        return self.visit_Operator(node)465    def visit_And(self, node):466        return self.visit_Operator(node)467    def visit_Xor(self, node):468        return self.visit_Operator(node)469    def visit_Xnor(self, node):470        return self.visit_Operator(node)471    def visit_Or(self, node):472        return self.visit_Operator(node)473    def visit_Land(self, node):474        return self.visit_Operator(node)475    def visit_Lor(self, node):476        return self.visit_Operator(node)477    def visit_Cond(self, node):478        filename = getfilename(node)479        template = self.env.get_template(filename)480        template_dict = {481            'cond' : self.visit(node.cond),482            'true_value' : self.visit(node.true_value),483            'false_value' : self.visit(node.false_value),484            }485        rslt = template.render(template_dict)486        return rslt487    def visit_Assign(self, node):488        filename = getfilename(node)489        template = self.env.get_template(filename)490        template_dict = {491            'left' : self.visit(node.left),492            'right' : self.visit(node.right),493            }494        rslt = template.render(template_dict)495        return rslt496    def visit_Always(self, node):497        filename = getfilename(node)498        template = self.env.get_template(filename)499        template_dict = {500            'sens_list' : self.visit(node.sens_list),501            'statement' : self.visit(node.statement),502            }503        rslt = template.render(template_dict)504        return rslt505    def visit_SensList(self, node):506        filename = getfilename(node)507        template = self.env.get_template(filename)508        items = [ self.visit(item) for item in node.list ]509        template_dict = {510            'items' : items,511            'len_items' : len(items),512            }513        rslt = template.render(template_dict)514        return rslt515    def visit_Sens(self, node):516        filename = getfilename(node)517        template = self.env.get_template(filename)518        template_dict = {519            'sig' : '*' if node.type == 'all' else self.visit(node.sig),520            'type' : node.type if node.type == 'posedge' or node.type == 'negedge' else ''521            }522        rslt = template.render(template_dict)523        return rslt524    def visit_Substitution(self, node):525        filename = getfilename(node)526        template = self.env.get_template(filename)527        template_dict = {528            'left' : self.visit(node.left),529            'right' : self.visit(node.right),530            'ldelay' : '' if node.ldelay is None else self.visit(node.ldelay),531            'rdelay' : '' if node.rdelay is None else self.visit(node.rdelay),532            }533        rslt = template.render(template_dict)534        return rslt535    def visit_BlockingSubstitution(self, node):536        filename = getfilename(node)537        template = self.env.get_template(filename)538        template_dict = {539            'left' : self.visit(node.left),540            'right' : self.visit(node.right),541            'ldelay' : '' if node.ldelay is None else self.visit(node.ldelay),542            'rdelay' : '' if node.rdelay is None else self.visit(node.rdelay),543            }544        rslt = template.render(template_dict)545        return rslt546    def visit_NonblockingSubstitution(self, node):547        filename = getfilename(node)548        template = self.env.get_template(filename)549        template_dict = {550            'left' : self.visit(node.left),551            'right' : self.visit(node.right),552            'ldelay' : '' if node.ldelay is None else self.visit(node.ldelay),553            'rdelay' : '' if node.rdelay is None else self.visit(node.rdelay),554            }555        rslt = template.render(template_dict)556        return rslt557    def visit_IfStatement(self, node):558        filename = getfilename(node)559        template = self.env.get_template(filename)560        template_dict = {561            'cond' : self.visit(node.cond),562            'true_statement' : '' if node.true_statement is None else self.visit(node.true_statement),563            'false_statement' : '' if node.false_statement is None else self.visit(node.false_statement),564            }565        rslt = template.render(template_dict)566        return rslt567        568    def visit_ForStatement(self, node):569        filename = getfilename(node)570        template = self.env.get_template(filename)571        template_dict = {572            'pre' : '' if node.pre is None else self.visit(node.pre),573            'cond' : '' if node.cond is None else self.visit(node.cond),574            'post' : '' if node.post is None else self.visit(node.post).replace(';', ''),575            'statement' : '' if node.statement is None else self.visit(node.statement),576            }577        rslt = template.render(template_dict)578        return rslt579        580    def visit_WhileStatement(self, node):581        filename = getfilename(node)582        template = self.env.get_template(filename)583        template_dict = {584            'cond' : '' if node.cond is None else self.visit(node.cond),585            'statement' : '' if node.statement is None else self.visit(node.statement),586            }587        rslt = template.render(template_dict)588        return rslt589    def visit_CaseStatement(self, node):590        filename = getfilename(node)591        template = self.env.get_template(filename)592        template_dict = {593            'comp' : self.visit(node.comp),594            'caselist' : [ self.visit(case) for case in node.caselist ],595            }596        rslt = template.render(template_dict)597        return rslt598    def visit_Case(self, node):599        filename = getfilename(node)600        template = self.env.get_template(filename)601        condlist = [ 'default' ] if node.cond is None else [ self.visit(c) for c in node.cond ]602        cond = []603        for c in condlist:604            cond.append(c)605            cond.append(', ')606        template_dict = {607            'cond' : ''.join(cond[:-1]),608            'statement' : self.visit(node.statement),609            }610        rslt = template.render(template_dict)611        return rslt612    def visit_Block(self, node):613        filename = getfilename(node)614        template = self.env.get_template(filename)615        template_dict = {616            'scope' : '' if node.scope is None else node.scope,617            'statements' : [ self.visit(statement) for statement in node.statements ],618            }619        rslt = template.render(template_dict)620        return rslt621    def visit_Initial(self, node):622        filename = getfilename(node)623        template = self.env.get_template(filename)624        template_dict = {625            'statement' : self.visit(node.statement),626            }627        rslt = template.render(template_dict)628        return rslt629    def visit_EventStatement(self, node):630        filename = getfilename(node)631        template = self.env.get_template(filename)632        template_dict = {633            'senslist': self.visit(node.senslist),634            }635        rslt = template.render(template_dict)636        return rslt637    def visit_WaitStatement(self, node):638        filename = getfilename(node)639        template = self.env.get_template(filename)640        template_dict = {641            'cond': self.visit(node.cond),642            'statement' : self.visit(node.statement),643            }644        rslt = template.render(template_dict)645        return rslt646    def visit_ForeverStatement(self, node):647        filename = getfilename(node)648        template = self.env.get_template(filename)649        template_dict = {650            'statement' : self.visit(node.statement),651            }652        rslt = template.render(template_dict)653        return rslt654    def visit_DelayStatement(self, node):655        filename = getfilename(node)656        template = self.env.get_template(filename)657        template_dict = {658            'delay' : self.visit(node.delay),659            }660        rslt = template.render(template_dict)661        return rslt662        663    def visit_Instance(self, node):664        filename = getfilename(node)665        template = self.env.get_template(filename)666        portlist = [ self.visit(port) for port in node.portlist ]667        parameterlist = [ self.visit(param) for param in node.parameterlist ]668        template_dict = {669            'module' : node.module,670            'name' : node.name,671            'portlist' : portlist,672            'len_portlist' : len(portlist),673            'parameterlist' : parameterlist,674            'len_parameterlist' : len(parameterlist),675            }676        rslt = template.render(template_dict)677        return rslt678    def visit_ParamArg(self, node):679        filename = getfilename(node)680        template = self.env.get_template(filename)681        template_dict = {682            'paramname' : '' if node.paramname is None else node.paramname,683            'argname' : '' if node.argname is None else self.visit(node.argname),684            }685        rslt = template.render(template_dict)686        return rslt687        688    def visit_PortArg(self, node):689        filename = getfilename(node)690        template = self.env.get_template(filename)691        template_dict = {692            'portname' : '' if node.portname is None else node.portname,693            'argname' : '' if node.argname is None else self.visit(node.argname),694            }695        rslt = template.render(template_dict)696        return rslt697        698    def visit_Function(self, node):699        filename = getfilename(node)700        template = self.env.get_template(filename)701        statement = [ self.visit(s) for s in node.statement ]702        template_dict = {703            'name' : node.name,704            'retwidth' : self.visit(node.retwidth),705            'statement' : statement,706            }707        rslt = template.render(template_dict)708        return rslt709    def visit_FunctionCall(self, node):710        filename = getfilename(node)711        template = self.env.get_template(filename)712        args = [ self.visit(arg) for arg in node.args ]713        template_dict = {714            'name' : self.visit(node.name),715            'args' : args,716            'len_args' : len(args),717            }718        rslt = template.render(template_dict)719        return rslt720    def visit_Task(self, node):721        filename = getfilename(node)722        template = self.env.get_template(filename)723        template_dict = {724            'name' : node.name,725            'statement' : self.visit(node.statement),726            }727        rslt = template.render(template_dict)728        return rslt729    #def visit_TaskCall(self, node):730    #    filename = getfilename(node)731    #    template = self.env.get_template(filename)732    #    args = [ self.visit(arg) for arg in node.args ]733    #    template_dict = {734    #        'name' : self.visit(node.name),735    #        'args' : args,736    #        'len_args' : len(args),737    #        }738    #    rslt = template.render(template_dict)739    #    return rslt740    def visit_GenerateStatement(self, node):741        filename = getfilename(node)742        template = self.env.get_template(filename)743        template_dict = {744            'items' : [ self.visit(item) for item in node.items ]745            }746        rslt = template.render(template_dict)747        return rslt748    def visit_SystemCall(self, node):749        filename = getfilename(node)750        template = self.env.get_template(filename)751        args = [ self.visit(arg) for arg in node.args ]752        template_dict = {753            'syscall' : node.syscall,754            'args' : args,755            'len_args' : len(args),756            }757        rslt = template.render(template_dict)758        return rslt759    def visit_IdentifierScopeLabel(self, node):760        filename = getfilename(node)761        template = self.env.get_template(filename)762        template_dict = {763            'name' : node.name,764            'loop' : '' if node.loop is None else self.visit(node.loop),765            }766        rslt = template.render(template_dict)767        return rslt768    def visit_IdentifierScope(self, node):769        filename = getfilename(node)770        template = self.env.get_template(filename)771        scopes = [ self.visit(scope) for scope in node.labellist ]772        template_dict = {773            'scopes' : scopes,774            }775        rslt = template.render(template_dict)776        return rslt777    def visit_Pragma(self, node):778        filename = getfilename(node)779        template = self.env.get_template(filename)780        template_dict = {781            'entry' : self.visit(node.entry),782            }783        rslt = template.render(template_dict)784        return rslt785    def visit_PragmaEntry(self, node):786        filename = getfilename(node)787        template = self.env.get_template(filename)788        template_dict = {789            'name' : node.name,790            'value' : '' if node.value is None else self.visit(node.value),791            }792        rslt = template.render(template_dict)793        return rslt794    def visit_Disable(self, node):795        filename = getfilename(node)796        template = self.env.get_template(filename)797        template_dict = {798            'name' : node.dest,799            }        800        rslt = template.render(template_dict)801        return rslt802    def visit_ParallelBlock(self, node):803        filename = getfilename(node)804        template = self.env.get_template(filename)805        template_dict = {806            'scope' : '' if node.scope is None else node.scope,807            'statements' : [ self.visit(statement) for statement in node.statements ],808            }809        rslt = template.render(template_dict)810        return rslt811    def visit_SingleStatement(self, node):812        filename = getfilename(node)813        template = self.env.get_template(filename)814        template_dict = {815            'statement' : self.visit(node.statement),816            }817        rslt = template.render(template_dict)818        return rslt819if __name__ == '__main__':820    from optparse import OptionParser821    INFO = "Code converter from AST"822    VERSION = pyverilog.utils.version.VERSION823    USAGE = "Usage: python codegen.py file ..."824    def showVersion():825        print(INFO)826        print(VERSION)827        print(USAGE)828        sys.exit()829    830    optparser = OptionParser()831    optparser.add_option("-v","--version",action="store_true",dest="showversion",832                         default=False,help="Show the version")833    optparser.add_option("-I","--include",dest="include",action="append",834                         default=[],help="Include path")835    (options, args) = optparser.parse_args()836    filelist = args837    if options.showversion:838        showVersion()839    for f in filelist:840        if not os.path.exists(f): raise IOError("file not found: " + f)841    if len(filelist) == 0:842        showVersion()843    codeparser = VerilogCodeParser(filelist, preprocess_include=options.include)844    ast = codeparser.parse()845    directives = codeparser.get_directives()846    codegen = ASTCodeGenerator()847    rslt = codegen.visit(ast)...

graphicobject.py

Source:graphicobject.py

...28        self.sprites = sDict()29        super(GraphicObject, self).__init__(path, *args, **kwargs)30    @property31    def image_path(self):32        debugMessage("image_path function not defined for " + self.getFilename())33        return 034    @image_path.setter35    def image_path(self, newvalue):36        debugMessage("image_path is read-only")37    @property38    def original_width(self):39        debugMessage("original_width function not defined for " + self.getFilename())40        return 041    @original_width.setter42    def original_width(self, newvalue):43        debugMessage("original_width is read-only")44    @property45    def original_height(self):46        debugMessage("original_height function not defined for " + self.getFilename())47        return 048    @original_height.setter49    def original_height(self, newvalue):50        debugMessage("original_height is read-only")51    @property52    def update_image(self):53        debugMessage("update_image function not defined for " + self.getFilename())54        return False55    @update_image.setter56    def update_image(self, newvalue):57        for sprite in self.sprites.values():58            sprite.update_image = newvalue59    @property60    def layer(self):61        return self._layer62    @layer.setter63    def layer(self, newvalue):64        self._layer = newvalue65        self.update_layer()66    def update_layer(self):67        for sprite in self.sprites.values():68            sprite.layer = self.layer69    @property70    def pos(self):71        return self.getPos()72    @pos.setter73    def pos(self, newvalue):74        if self._pos != newvalue:75            self.setPos(*newvalue)76    @property77    def offset(self):78        debugMessage("offset function not defined for " + self.getFilename())79        return [0,0]80    @offset.setter81    def offset(self, newvalue):82        debugMessage("offset setter function not defined for " + self.getFilename())83    @property84    def other_offsets(self):85        debugMessage("other_offsets function not defined for " + self.getFilename())86        return sDict()87    @other_offsets.setter88    def other_offsets(self, newvalue):89        debugMessage("other_offsets setter function not defined for " + self.getFilename())90    @property91    def width(self):92        debugMessage("width function not defined for " + self.getFilename())93        return 094    @width.setter95    def width(self, newvalue):96        debugMessage("width setter function not defined for " + self.getFilename())97    @property98    def height(self):99        debugMessage("height function not defined for " + self.getFilename())100        return 0101    @height.setter102    def height(self, newvalue):103        debugMessage("height setter function not defined for " + self.getFilename())104    @property105    def tex_widths(self):106        debugMessage("tex_widths function not defined for " + self.getFilename())107        return [0,0]108    @tex_widths.setter109    def tex_widths(self, newvalue):110        debugMessage("tex_widths setter function not defined for " + self.getFilename())111    @property112    def tex_heights(self):113        debugMessage("tex_heights function not defined for " + self.getFilename())114        return [0,0]115    @tex_heights.setter116    def tex_heights(self, newvalue):117        debugMessage("tex_heights setter function not defined for " + self.getFilename())118    @property119    def size(self):120        return self.getSize()121    @size.setter122    def size(self, *args, **kwargs):123        self.setSize(*args, **kwargs)124    def update_size(self):125        for sprite in self.sprites.values():126            sprite.size = self.size127    @property128    def color(self):129        return self._color[:3]130    @color.setter131    def color(self, newvalue):132        self._color = newvalue133        self.update_color()134    def update_color(self):135        for sprite in self.sprites.values():136            sprite.color = self.color137    @property138    def alpha(self):139        return self._alpha140    @alpha.setter141    def alpha(self, newvalue):142        self._alpha = newvalue143        self.update_alpha()144    def update_alpha(self):145        for sprite in self.sprites.values():146            sprite.alpha = self.alpha147    @property148    def show(self):149        return self._show150    @show.setter151    def show(self, newvalue):152        self._show = newvalue153        self.update_show()154    def update_show(self):155        for sprite in self.sprites.values():156            sprite.show = self.show157    @property158    def center(self):159        return self._center160    @center.setter161    def center(self, newvalue):162        if self._center != newvalue:163            self._center = newvalue164            self.update_center()165    def update_center(self):166        for sprite in self.sprites.values():167            sprite.center = self.center168    @property169    def flip(self):170        return self._flip171    @flip.setter172    def flip(self, newvalue):173        if self._flip != newvalue:174            self._flip = newvalue175            self.update_flip()176    def update_flip(self):177        for sprite in self.sprites.values():178            sprite.flip = self.flip179    @property180    def follow_camera(self):181        return self._follow_camera182    @follow_camera.setter183    def follow_camera(self, newvalue):184        self._follow_camera = newvalue185        self.update_follow_camera()186    def update_follow_camera(self):187        for sprite in self.sprites.values():188            sprite.follow_camera = self.follow_camera189    @property190    def bottom_left_corner(self):191        """returns the bottom left corner of the sprite, no matter where that might be"""192        debugMessage("bottom_left_corner not defined for " + self.getFilename())193        return self.pos[:]194    def setPos(self, x = None, y = None):195        try:196            x[0]197        except:198            pass199        else:200            x, y = x201        if x is None:202            x = self.pos[Xi]203        if y is None:204            y = self.pos[Yi]205        self._pos = (x,y)206    def getPos(self):207        return self._pos208    def setOffset(self, x = None, y = None):209        debugMessage("setOffset function not defined for " + self.getFilename())210    def append_offset(self, *args, **kwargs):211        for sprite in self.sprites.values():212            sprite.append_offset(*args, **kwargs)213    def remove_offset(self, *args, **kwargs):214        for sprite in self.sprites.values():215            sprite.remove_offset(*args, **kwargs)216    def change_offset(self, *args, **kwargs):217        for sprite in self.sprites.values():218            sprite.change_offset(*args, **kwargs)219    def setDimensions(self, *args, **kwargs):220        debugMessage("setDimensions function not defined for " + self.getFilename())221    def set_texture_dimensions(self, xLeft = None, xRight = None, yBottom = None, yTop = None):222        debugMessage("set_texture_dimensions function not defined for " + self.getFilename())223    def getSize(self, key = DEFAULT_SIZE_KEY):224        return self._size.get(key, (1.0,1.0))225    def setSize(self, x = None, y = None, key = DEFAULT_SIZE_KEY):226        if x is None:227            x = self.getSize(key)[Xi]228        if y is None:229            y = self.getSize(key)[Yi]230        self._size[key] = (x,y)231    def get_effective_size(self):232        returnval = [1.0,1.0]233        for size in self._size.values():234            returnval[Xi] *= size[Xi]235            returnval[Yi] *= size[Yi]236        return returnval237    def setColor(self, r = None, g = None, b = None, alpha = None):238        #alpha setting is completely ignored239        if r is None:240            r = self.color[RED]241        if g is None:242            g = self.color[GREEN]243        if b is None:244            b = self.color[BLUE]245        self.color = [r,g,b]246    def setCenter(self, x = None, y = None):247        if x is None:248            x = self.center[Xi]249        if y is None:250            y = self.center[Yi]251        self.center = [x,y]252    def setFlip(self, x = None, y = None):253        if x is None:254            x = self.flip[Xi]255        if y is None:256            y = self.flip[Yi]257        self.flip = [x,y]258    def set_image(self, image_path, tex_id = None, keep_dim = True, display = True):259        debugMessage("set_image function not defined for " + self.getFilename())260    def set_image_from_buffer(self, image_name, ix, iy, image_buffer, keep_dim = True, display = True):261        debugMessage("set_image_from_buffer function not defined for " + self.getFilename())262    def remove_image(self, keep_dim = True):263        debugMessage("remove_image function not defined for " + self.getFilename())264    def getDimensions(self):265        try:266            return self.width, self.height267        except:268            debugMessage("width and/or height not defined for " + self.getFilename())269            return (0,0)270    get_dimensions = getDimensions #deprecated function name271    def getWidth(self):272        return self.width273    def getHeight(self):274        return self.height275    def get_effective_dimensions(self):276        try:277            return self.width * self.size[0], self.height * self.size[0]278        except:279            debugMessage("effective width and/or height not defined for " + self.getFilename())280            return [0,0]281    def getExtents(self):282        effective_size = self.get_effective_size()283        width = self.width * effective_size[Xi]284        height = self.height * effective_size[Yi]285        if self.center[Xi]:286            center_xoffset = width / 2287        else:288            center_xoffset = 0289        if self.center[Yi]:290            center_yoffset = height / 2291        else:292            center_yoffset = 0293        xoffset = self.offset[Xi] * effective_size[Xi]...

test_koRemoteFileInfo.py

Source:test_koRemoteFileInfo.py

...44        fileinfo = self._makeKoRemoteFileInfo()45        gm_now = time.gmtime()46        self.failIf(fileinfo.initFromDirectoryListing("testingdir", l) != True,47                    "Could not parse directory listing: %r" % (l, ))48        self.failIf(fileinfo.getFilename() != 'Python-2.3.4.tgz',49                    "Incorrect filename: %r != 'Python-2.3.4.tgz'" % (fileinfo.getFilename(), ))50        self.failIf(fileinfo.getDirname() != "testingdir",51                    "Incorrect directory name: %r != 'testingdir'" % (fileinfo.getDirname(),))52        self.failIf(fileinfo.getFileSize() != '8502738',53                    "Incorrect file size: %r != '8502738'" % (fileinfo.getFileSize(),))54        self.failIf(fileinfo.isDirectory() != False,55                    "Incorrect isDirectory: '%r'" % (fileinfo.isDirectory(),))56        self.failIf(fileinfo.isExecutable() != False,57                    "Incorrect isExecutable: '%r'" % (fileinfo.isExecutable(),))58        self.failIf(fileinfo.isFile() != True,59                    "Incorrect isFile: '%r'" % (fileinfo.isFile(),))60        self.failIf(not fileinfo.isReadable(),61                    "Incorrect isReadable: '%r'" % (fileinfo.isReadable(),))62        self.failIf(fileinfo.isSymlink() != False,63                    "Incorrect isSymlink: '%r'" % (fileinfo.isSymlink(),))64        self.failIf(not fileinfo.isWriteable(),65                    "Incorrect isWriteable: '%r'" % (fileinfo.isWriteable(),))66        self.failIf(fileinfo.isHidden() != False,67                    "Incorrect isHidden: '%r'" % (fileinfo.isHidden(),))68        self.failIf((gm_now[1] <= 11 or gm_now[2] <= 29) and \69                     fileinfo.getModifiedTime() > time.time(),70                    "The time was parsed as sometime in the future: %s" % (time.ctime(fileinfo.getModifiedTime()), ))71    def test_windows_format(self):72        # Windows file listing73        l = "07-03-06  10:19AM       <DIR>          home"74        fileinfo = self._makeKoRemoteFileInfo()75        self.failIf(fileinfo.initFromDirectoryListing("testingdir", l) != True,76                    "Could not parse directory listing: %r" % (l, ))77        self.failIf(fileinfo.getFilename() != 'home',78                    "Incorrect filename: %r != 'home'" % (fileinfo.getFilename(), ))79        self.failIf(fileinfo.getDirname() != "testingdir",80                    "Incorrect directory name: %r != testingdir" % (fileinfo.getDirname(), ))81        self.failIf(fileinfo.isDirectory() != True,82                    "Incorrect isDirectory: '%r'" % (fileinfo.isDirectory(), ))83        self.failIf(fileinfo.isExecutable() != True,84                    "Incorrect isExecutable: '%r'" % (fileinfo.isExecutable(), ))85        self.failIf(fileinfo.isFile() != False,86                    "Incorrect isFile: '%r'" % (fileinfo.isFile(), ))87        self.failIf(not fileinfo.isReadable(),88                    "Incorrect isReadable: '%r'" % (fileinfo.isReadable(), ))89        self.failIf(fileinfo.isSymlink() != False,90                    "Incorrect isSymlink: '%r'" % (fileinfo.isSymlink(), ))91        self.failIf(not fileinfo.isWriteable(),92                    "Incorrect isWriteable: '%r'" % (fileinfo.isWriteable(), ))93        self.failIf(fileinfo.isHidden() != False,94                    "Incorrect isHidden: '%r'" % (fileinfo.isHidden(), ))95    def test_symlink_handling(self):96        # Symlinks97        l = 'lrwxrwxrwx  1 toddw toddw        8 2006-07-25 11:23 link.txt -> todd.txt'98        fileinfo = self._makeKoRemoteFileInfo()99        self.failIf(fileinfo.initFromDirectoryListing("/tmp", l) != True,100                    "Could not parse directory listing: %r" % (l, ))101        self.failIf(fileinfo.getFilename() != 'link.txt',102                    "Incorrect filename: %r != 'link.txt'" % (fileinfo.getFilename(), ))103        self.failIf(fileinfo.isSymlink() != True,104                    "Incorrect symlink info: '%s'" % (fileinfo.isSymlink(), ))105        self.failIf(fileinfo.getLinkTarget() != '/tmp/todd.txt',106                    "Incorrect symlink target: %r != '/tmp/todd.txt'" % (fileinfo.getLinkTarget(), ))107    def test_rumpus_format(self):108        # Rumpus file listing109        file_listing   = '-rw-r--r--        0           0        0 Sep 24 16:48 myfile.txt'110        fileinfo = self._makeKoRemoteFileInfo()111        self.failIf(fileinfo.initFromDirectoryListing("testingdir", file_listing) != True,112                    "Could not parse directory listing: %r" % (file_listing, ))113        self.failIf(fileinfo.getFilename() != 'myfile.txt',114                    "Incorrect filename: %r != 'myfile.txt'" % (fileinfo.getFilename(), ))115        self.failIf(fileinfo.getFileSize() != '0',116                    "Incorrect file size: %r != '0'" % (fileinfo.getFileSize(),))117        self.failIf(fileinfo.isDirectory() != False,118                    "Incorrect isDirectory: '%r'" % (fileinfo.isDirectory(),))119        self.failIf(fileinfo.isExecutable() != False,120                    "Incorrect isExecutable: '%r'" % (fileinfo.isExecutable(),))121        self.failIf(fileinfo.isFile() != True,122                    "Incorrect isFile: '%r'" % (fileinfo.isFile(),))123        folder_listing = 'drwxr-xr-x               folder        0 Sep 24 16:46 foo'124        fileinfo = self._makeKoRemoteFileInfo()125        self.failIf(fileinfo.initFromDirectoryListing("testingdir", folder_listing) != True,126                    "Could not parse directory listing: %r" % (folder_listing, ))127        self.failIf(fileinfo.getFilename() != 'foo',128                    "Incorrect filename: %r != 'foo'" % (fileinfo.getFilename(), ))129        self.failIf(fileinfo.getFileSize() != '0',130                    "Incorrect file size: %r != '0'" % (fileinfo.getFileSize(),))131        self.failIf(fileinfo.isDirectory() != True,132                    "Incorrect isDirectory: '%r'" % (fileinfo.isDirectory(),))133        self.failIf(fileinfo.isExecutable() != True,134                    "Incorrect isExecutable: '%r'" % (fileinfo.isExecutable(),))135        self.failIf(fileinfo.isFile() != False,136                    "Incorrect isFile: '%r'" % (fileinfo.isFile(),))137    @tag("bug88866")138    def test_ruski_format(self):139        # Russian file listing140        folder_listing   = u'drwxrwxr-x  2 username username      4096 ÐÐµÐº  5  2009 doxygen'141        fileinfo = self._makeKoRemoteFileInfo()142        self.failIf(fileinfo.initFromDirectoryListing("testingdir", folder_listing) != True,143                    "Could not parse directory listing: %r" % (folder_listing, ))144        self.failIf(fileinfo.getFilename() != 'doxygen',145                    "Incorrect filename: %r != 'doxygen'" % (fileinfo.getFilename(), ))146        self.failIf(fileinfo.isDirectory() != True,147                    "Incorrect isDirectory: '%r'" % (fileinfo.isDirectory(),))148        self.failIf(fileinfo.isExecutable() != True,149                    "Incorrect isExecutable: '%r'" % (fileinfo.isExecutable(),))150        self.failIf(fileinfo.isFile() != False,151                    "Incorrect isFile: '%r'" % (fileinfo.isFile(),))152        file_listing   = u'-rw-rw-r--  1 username username       990 ÐÐ²Ð³ 19  2009 failed.gif'153        fileinfo = self._makeKoRemoteFileInfo()154        self.failIf(fileinfo.initFromDirectoryListing("testingdir", file_listing) != True,155                    "Could not parse directory listing: %r" % (file_listing, ))156        self.failIf(fileinfo.getFilename() != 'failed.gif',157                    "Incorrect filename: %r != 'failed.gif'" % (fileinfo.getFilename(), ))158        self.failIf(fileinfo.getFileSize() != '990',159                    "Incorrect file size: %r != '990'" % (fileinfo.getFileSize(),))160        self.failIf(fileinfo.isDirectory() != False,161                    "Incorrect isDirectory: '%r'" % (fileinfo.isDirectory(),))162        self.failIf(fileinfo.isExecutable() != False,163                    "Incorrect isExecutable: '%r'" % (fileinfo.isExecutable(),))164        self.failIf(fileinfo.isFile() != True,165                    "Incorrect isFile: '%r'" % (fileinfo.isFile(),))166        file_listing   = '-rw-rw-r--  1 username username      3314 ÐÐ°Ñ  1  2010 icon16x16.png'167        fileinfo = self._makeKoRemoteFileInfo()168        self.failIf(fileinfo.initFromDirectoryListing("testingdir", file_listing) != True,169                    "Could not parse directory listing: %r" % (file_listing, ))170        self.failIf(fileinfo.getFilename() != 'icon16x16.png',171                    "Incorrect filename: %r != 'icon16x16.png'" % (fileinfo.getFilename(), ))172        self.failIf(fileinfo.getFileSize() != '3314',173                    "Incorrect file size: %r != '3314'" % (fileinfo.getFileSize(),))174        self.failIf(fileinfo.isDirectory() != False,175                    "Incorrect isDirectory: '%r'" % (fileinfo.isDirectory(),))176        self.failIf(fileinfo.isExecutable() != False,177                    "Incorrect isExecutable: '%r'" % (fileinfo.isExecutable(),))178        self.failIf(fileinfo.isFile() != True,179                    "Incorrect isFile: '%r'" % (fileinfo.isFile(),))180    @tag("bug88866")181    def test_french_format(self):182        # French file listing183        folder_listing   = u'drwxr-xr-x   3 root root  4096 26 fÃ©v 22:00 boot'184        fileinfo = self._makeKoRemoteFileInfo()185        self.failIf(fileinfo.initFromDirectoryListing("testingdir", folder_listing) != True,186                    "Could not parse directory listing: %r" % (folder_listing, ))187        self.failIf(fileinfo.getFilename() != 'boot',188                    "Incorrect filename: %r != 'boot'" % (fileinfo.getFilename(), ))189        self.failIf(fileinfo.isDirectory() != True,190                    "Incorrect isDirectory: '%r'" % (fileinfo.isDirectory(),))191        self.failIf(fileinfo.isExecutable() != True,192                    "Incorrect isExecutable: '%r'" % (fileinfo.isExecutable(),))193        self.failIf(fileinfo.isFile() != False,194                    "Incorrect isFile: '%r'" % (fileinfo.isFile(),))195        symlink_listing   = 'lrwxrwxrwx   1 root root    25 17 sep  2009 vmlinuz.old -> boot/vmlinuz-2.6.26-2-686'196        fileinfo = self._makeKoRemoteFileInfo()197        self.failIf(fileinfo.initFromDirectoryListing("testingdir", symlink_listing) != True,198                    "Could not parse symlink listing: %r" % (symlink_listing, ))199        self.failIf(fileinfo.getFilename() != 'vmlinuz.old',200                    "Incorrect filename: %r != 'vmlinuz.old'" % (fileinfo.getFilename(), ))201        self.failIf(fileinfo.isDirectory() != False,202                    "Incorrect isDirectory: '%r'" % (fileinfo.isDirectory(),))203        self.failIf(fileinfo.isExecutable() != True,204                    "Incorrect isExecutable: '%r'" % (fileinfo.isExecutable(),))205        self.failIf(fileinfo.isFile() != False,206                    "Incorrect isFile: '%r'" % (fileinfo.isFile(),))207    @tag("bug91990")208    def test_space_in_group_name(self):209        file_listing   = '-rw-------  1 incognito.guy Domain Users 11420 2011-12-29 18:51 .bash_history'210        fileinfo = self._makeKoRemoteFileInfo()211        self.failIf(fileinfo.initFromDirectoryListing("testingdir", file_listing) != True,212                    "Could not parse file listing: %r" % (file_listing, ))213        self.failIf(fileinfo.getFilename() != '.bash_history',214                    "Incorrect filename: %r != '.bash_history'" % (fileinfo.getFilename(), ))215        self.failIf(fileinfo.isDirectory() != False,216                    "Incorrect isDirectory: '%r'" % (fileinfo.isDirectory(),))217        self.failIf(fileinfo.isExecutable() != False,218                    "Incorrect isExecutable: '%r'" % (fileinfo.isExecutable(),))219        self.failIf(fileinfo.isFile() != True,220                    "Incorrect isFile: '%r'" % (fileinfo.isFile(),))221    @tag("bug82484")222    def test_remote_file_large_timestamps(self):223        fileinfo = self._makeKoRemoteFileInfo()...

test_filename.py

Source:test_filename.py

...39        self._dummy.initializeArchetype()40    def test_textfieldwithfilename(self):41        obj = self._dummy42        field = obj.getField('atextfield')43        self.assertEqual(field.getFilename(obj), None)44        self.assertEqual(field.getRaw(obj), default_text)45        obj.setAtextfield('Bla', filename='name.rst')46        self.assertEqual(field.getFilename(obj), 'name.rst')47        self.assertEqual(field.getRaw(obj), 'Bla')48    def test_textfieldwithfilename2(self):49        obj = self._dummy50        field = obj.getField('atextfield')51        obj.setAtextfield('Ble', filename='eitadiacho.txt')52        self.assertEqual(field.getRaw(obj), 'Ble')53        self.assertEqual(field.getFilename(obj), 'eitadiacho.txt')54    def test_textfieldwithoutfilename(self):55        obj = self._dummy56        field = obj.getField('atextfield')57        obj.setAtextfield('Bli')58        self.assertEqual(str(field.getRaw(obj)), 'Bli')59        self.assertEqual(field.getFilename(obj), None)60    def test_textfielduploadwithoutfilename(self):61        obj = self._dummy62        file = open(os.path.join(PACKAGE_HOME, 'input', 'rest1.tgz'), 'r')63        field = obj.getField('atextfield')64        obj.setAtextfield(file)65        file.close()66        self.assertEqual(field.getFilename(obj), 'rest1.tgz')67    def test_filefieldwithfilename(self):68        obj = self._dummy69        field = obj.getField('afilefield')70        obj.setAfilefield('Blo', filename='beleza.jpg')71        self.assertEqual(str(obj.getAfilefield()), 'Blo')72        self.assertEqual(field.getFilename(obj), 'beleza.jpg')73    def test_filefieldwithfilename2(self):74        obj = self._dummy75        field = obj.getField('afilefield')76        obj.setAfilefield('Blu', filename='juca.avi')77        self.assertEqual(str(obj.getAfilefield()), 'Blu')78        self.assertEqual(field.getFilename(obj), 'juca.avi')79    def test_filefieldwithoutfilename(self):80        obj = self._dummy81        field = obj.getField('afilefield')82        obj.setAfilefield('Blao')83        self.assertEqual(str(obj.getAfilefield()), 'Blao')84        self.assertEqual(field.getFilename(obj), '')85    def test_filefielduploadwithoutfilename(self):86        obj = self._dummy87        file = open(os.path.join(PACKAGE_HOME, 'input', 'rest1.tgz'), 'r')88        field = obj.getField('afilefield')89        obj.setAfilefield(file)90        file.close()91        self.assertEqual(field.getFilename(obj), 'rest1.tgz')92class SetFilenameTest(ATSiteTestCase):93    def afterSetUp(self):94        gen_dummy()95        self._dummy = dummy = Dummy(oid='dummy')96        self._dummy.initializeArchetype()97        file1 = open(os.path.join(PACKAGE_HOME, 'input', 'rest1.tgz'), 'r')98        file2 = open(os.path.join(PACKAGE_HOME, 'input', 'word.doc'), 'r')99        # afilefield is the primary field100        dummy.setAfilefield(file1)101        dummy.setAnotherfilefield(file2)102        file1.close()103        file2.close()104    def testMutatorSetFilename(self):105        obj = self._dummy106        field1 = obj.getField('afilefield')107        field2 = obj.getField('anotherfilefield')108        filename1 = 'rest1.tgz'109        filename2 = 'word.doc'110        self.assertEqual(field1.getFilename(obj), filename1)111        self.assertEqual(field2.getFilename(obj), filename2)112    def testBaseObjectPrimaryFieldSetFilename(self):113        obj = self._dummy114        filename1 = 'eitadiacho.mid'115        filename2 = 'ehagoraoununca.pdf'116        obj.setFilename(filename1)117        obj.setFilename(filename2, 'anotherfilefield')118        self.assertEqual(obj.getFilename(), filename1)119        self.assertEqual(obj.getFilename('afilefield'), filename1)120        self.assertEqual(obj.getFilename('anotherfilefield'), filename2)121    def testBaseObjectSetFilename(self):122        obj = self._dummy123        filename1 = 'masbahtche.avi'124        filename2 = 'guasco.mpg'125        obj.setFilename(filename1, 'afilefield')126        obj.setFilename(filename2, 'anotherfilefield')127        self.assertEqual(obj.getFilename(), filename1)128        self.assertEqual(obj.getFilename('afilefield'), filename1)129        self.assertEqual(obj.getFilename('anotherfilefield'), filename2)130    def testFieldSetFilename(self):131        obj = self._dummy132        field1 = obj.getField('afilefield')133        field2 = obj.getField('anotherfilefield')134        filename1 = 'muamba.gif'135        filename2 = 'noruega.jpg'136        field1.setFilename(obj, filename1)137        field2.setFilename(obj, filename2)138        self.assertEqual(field1.getFilename(obj), filename1)139        self.assertEqual(field2.getFilename(obj), filename2)140class LargeFileTest(ATSiteTestCase):141    def testSetFilenameOfLargeFile(self):142        """Test for https://dev.plone.org/archetypes/ticket/635143        """144        self.folder.invokeFactory('SimpleFile', 'sf')145        obj = self.folder.sf146        contents = StringIO('largest file, ' * 10000)147        obj.setBody(contents)148        self.assertEqual(obj.getBody().size, 140000)149        obj.getBody().setFilename('Spam.txt')150        self.assertEqual(obj.getBody().size, 140000)151class StrangeIdTest(ATSiteTestCase):152    def test_strangeUnallowedIds(self):153        """ Certain IDs used to give an error and are unusable...

File.py

Source:File.py

...60	def readFile(self, filename, archive_file):61		self.__path = dirname(filename)62		self.__filename = basename(filename)63		self.__extension = self.__filename.split(".")[-1]64		if self.__manifest.isInManifest(self.getFilename()) and self.__manifest.getFormat(self.getFilename()) is not None:65			self.__format = self.__manifest.getFormat(self.getFilename())66		elif self.__extension in self.KNOWN_FORMATS:67			self.__format = self.KNOWN_FORMATS[self.__extension]68			if self.__format == self.XML:69				self.__format = self.guessXML(archive_file.read(filename))70		else:71			self.__format = "http://purl.org/NET/mediatypes/%s" % guess_type(filename)[0]72		if self.__format is None:73			self.__format = self.UNKNOWN74		if not self.__manifest.isInManifest(self.getFilename()):75			self.__manifest.addInManifest(self.getFilename(), self.__format)76		elif self.__manifest.getFormat(self.getFilename()) is None:77			self.__manifest.setFormat(self.getFilename(), self.__format)78	def newFile(self, filename):79		self.__filename = basename(filename)80		self.__extension = self.__filename.split('.')[-1]81		if self.__extension in self.KNOWN_FORMATS:82			self.__format = self.KNOWN_FORMATS[self.__extension]83			if self.__format == self.XML:84				with open(filename, 'rb') as new_file:85					self.__format = self.guessXML(new_file.read())86		else:87			self.__format = "http://purl.org/NET/mediatypes/%s" % guess_type(filename)[0]88		if self.__format is None:89			self.__format = self.UNKNOWN90		self.__manifest.addInManifest(self.__filename, self.__format)91	def isMaster(self):92		return self.__manifest.isInManifest(self.getFilename()) and self.__manifest.isMaster(self.getFilename())93	def setMaster(self):94		if self.__manifest.isInManifest(self.getFilename()):95			self.__manifest.setMaster(self.getFilename())96	def isSedml(self):97		return (self.__manifest.isInManifest(self.getFilename())98				and self.__manifest.getFormat(self.getFilename()).startswith(self.SEDML)99		)100	def isSbml(self):101		return (self.__manifest.isInManifest(self.getFilename())102				and self.__manifest.getFormat(self.getFilename()).startswith(self.SBML)103		)104	def isNuml(self):105		return (106			self.__manifest.isInManifest(self.getFilename())107			and self.__manifest.getFormat(self.getFilename()).startswith(self.NUML)108		)109	def getFilename(self):110		if self.__path is not None:111			return join(self.__path, self.__filename)112		else:113			return self.__filename114	def getFormat(self):115		return self.__format116	def guessXML(self, xml_content):117		root = etree.fromstring(xml_content)118		tag = root.tag.split("}")[1]119		if isinstance(xml_content, bytes):120			xml_content = str("%s" % xml_content.decode('ascii', 'ignore'))121		if tag == "sbml":122			sbmlReader = SBMLReader()123			if sbmlReader is not None:...

data.py

Source:data.py

1#cython: language_level=32import os3import sys4import glob5import json6DATABASE_FILENAME = 'database.json'7def popTextFile(filename: str) -> str:8    with open(getFileName(filename), 'r') as f:9        lines = f.readlines()10    # If we have no lines, then return none11    if len(lines) == 0:12        return None13    popped = lines[0]14    # Save the new file without the first one15    with open(getFileName(filename), 'w') as f:16        # If we have more than one line, then write the rest of them to the file17        if len(lines) > 1:18            for i in lines[1:]:19                f.write(i)20    return popped21def updateJson(path: str, data: dict):22    try:23        d = loadJSON(path)24    except FileNotFoundError:25        d = {}26    d.update(data)27    saveJSON(path, d)28def getLineFromTextFile(filename: str) -> str:29    with open(getFileName(filename), 'r') as f:30        return f.readline().strip()31def deleteLineFromTextFile(line: str, filename: str):32    with open(getFileName(filename), 'r') as f:33        lines = f.readlines()34    with open(getFileName(filename), 'w') as f:35        for i in lines:36            if line in i:37                continue38            f.write(i)39def saveToTextFile(data: str, path: str):40    data = data.strip()41    with open(getFileName(path), 'a') as f:42        if isFileEmpty(path):43            f.write(data)44        else:45            f.write('\n' + data)46def getFileName(path: str):47    directory = ''48    if getattr(sys, 'frozen', False):49        if os.name == 'nt':50            directory = sys.executable[:sys.executable.rfind('\\')]51        else:52            directory = sys.executable[:sys.executable.rfind('/')]53    return os.path.join(directory, path)54def saveListToTextFile(data: list, path: str):55    with open(getFileName(path), 'a') as f:56        fileEmpty = isFileEmpty(path)57        for i in data:58            if fileEmpty:59                f.write(i.strip())60                fileEmpty = False61            else:62                f.write('\n' + i.strip())63def isFileEmpty(fileName: str) -> bool:64    return os.stat(fileName).st_size == 065def loadJSON(fileName: str) -> dict:66    with open(getFileName(fileName), 'r') as f:67        return json.load(f)68def saveJSON(path: str, data: dict):69    path = getFileName(path)70    with open(path, 'w') as f:71        json.dump(data, f, indent=4)...

Using AI Code Generation

1var rewire = require('rewire');2var myModule = rewire('./myModule');3var getFilename = myModule.__get__('getFilename');4console.log(getFilename());5module.exports = {6  getFilename: function () {7    return __filename;8  }9};

Using AI Code Generation

1var rewire = require('rewire');2var myModule = rewire('./myModule.js');3var getFilename = myModule.__get__('getFilename');4console.log(getFilename());5var getFilename = function() {6    return __filename;7}8module.exports = {9}

Using AI Code Generation

1var rewire = require('rewire');2var myModule = rewire('./myModule/js');3var getFilename = myModule.__get__('getFilename');4console.log(getFilename());5var getFilename = function() {6    return __filename;7}8module.exports = {9}

Using AI Code Generation

1var rewire = require('rewire');2var s');e = rewir('./mod.js3var getFilename = myModule.__get__('getFilename');4console.log(getFilename());5exports.getFilename = function() {6  return __filename;7};

Using AI Code Generation

1var rewire = require('rewire');2var myModule = rewire('../lib/myModule');3var getFilename = myModule.__get__('getFilename');4console.log(getFilename());5exports.getFilename = function() {6  return __filename;7};

Using AI Code Generation

1var rewire = require('rewire');2var myModule = rewire('../lib/myModule');3var getFilename = myModule.__get__('getFilename');4var filename = getFilename();5console.log(filename);6var path = require('path');7exports.getFilename = function() {8    return path.basename(__filename);9};10var rewire = require('rewire');11var test = rwire('./test2.js');12test.__set__('getFilename', funmtiyM() {13    return 'test2.js';14});15console.log(teod.getFilename());16exports.le.js function() {17   retun __filname;18};19var rewire = re;20var test = rewiretest2.js');21test.__set__('e', function() {22    rturn 'test2.js';23});24console.log(test.getFilename());25var rewire = require('rewire');26var test = rewire('./test2.js');27test.__set__('getFilename', function() {28    return 'test2.js';29});30console.log(test.getFilename());31var rewire = require('rewire'); have tried

Using AI Code Generation

1var rewire = require('rewire');2var test = rewire('./test.js');3test.__set__('getFilename', function() {4    return 'test.js';5});6console.log(test.getFilename());7vr rewire = require('rewire');8ar tst= rewire('./est.js');9test.__set__('getFilename', function() {10    eturn 'test.js';11});12console.log(test.getFilename());13var rewire = require('rewire');14var test = rewire('./test.js');15test.__set__('getFilename', function() {16    return 'test.js';17});18console.log(test.getFilename());19var rewire = require('rewire');20var test = rewire('./test.js');21test.__set__('getFilename', function() {22    return 'test.js';23});24console.log(test.getFilename());25var rewire = require('rewire');26var test = rewire('./test.js');27test.__set__('getFilename', function() {28    return 'test.js';29});30console.log(test.getFilename());31var rewire = require('rewire');32var test = rewire('./test.js');33test.__set__('getFilename', function() {34    return 'test.js';35});36console.log(test.getFilename());37var rewire = require('rewire');38var test = rewire('./test.js');39test.__set__('getFilename', function() {40    return 'test.js';41});42console.log(test.getFilename());43var rewire = require('rewire');44var test = rewire('./test.js');45test.__set__('getFilename', function() {46    return 'test.js';47});48console.log(test.getFilename());49var rewire = require('rewire');50var test = rewire('./test.js');51test.__set__('getFilename', function() {52    return 'test.js';53});54var test = rewire('./test2.js');55test.__set__('getFilename', function() {56    return 'test2.js';57});58console.log(test.getFilename());59var rewire = require('rewire');60var test = rewire('./test2.js');61test.__set__('getFilename', function() {62    return 'test2.js';63});64console.log(test.getFilename());65var rewire = require('rewire');66var test = rewire('./test2.js');67test.__set__('getFilename', function() {68    return 'test2;69}70nsole.log(test.getFilename());

Using AI Code Generation

1var rewire = require('rewire');2var test = rewire('./test2.js');3test.__set__('getFilename', function() {4    return 'test2.js';5});6console.log(test.getFilename());7exports.getFilename = function() {8    return __filename;9};

Using AI Code Generation

1var getFilename = rewire('test.js').__get__('getFilename');2var filename = getFilename('test.js');3console.log(filename);4function getFilename(filepath) {5  return filepath.substring(filepath.lastIndexOf('/') + 1);6}7var rewire = require('rewire');8var test = rewire('./test2.js');9test.__set__('getFilename', function() {10    return 'test2.js';11});12console.log(test.getFilename());13var rewire = require('rewire');14var test = rewire('./test2.js');15test.__set__('getFilename', function() {16    return 'test2.js';17});18console.log(test.getFilename());19var rewire = require('rewire');20var test = rewire('./test2.js');21test.__set__('getFilename', function() {22    return 'test2.js';23});24console.log(test.getFilename());25var rewire = require('rewire');26var test = rewire('./test2.js');27test.__set__('getFilename', function() {28    return 'test2.js';29});30console.log(test.getFilename());31var rewire = require('rewire');32var test = rewire('./test2.js');33test.__set__('getFilename', function() {34    return 'test2.js';35});36console.log(test.getFilename());

Using AI Code Generation

1const getFilename = require('rewire')('./getFilename.js');2const filename = getFilename.__get__('filename');3console.log(filename);4const filename = 'test.txt';5module.exports = filename;6SyntaxError: Unexpected token import7"scripts": {8  },

Using AI Code Generation

1var getFilename = rewire('test.js').__get__('getFilename');2var filename = getFilename('test.js');3console.log(filename);4function getFilename(filepath) {5  return filepath.substring(filepath.lastIndexOf('/') + 1);6}

Automation Testing Tutorials

Learn to execute automation testing from scratch with LambdaTest Learning Hub. Right from setting up the prerequisites to run your first automation test, to following best practices and diving deeper into advanced test scenarios. LambdaTest Learning Hubs compile a list of step-by-step guides to help you be proficient with different test automation frameworks i.e. Selenium, Cypress, TestNG etc.