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How to use biggerBox method in fMBT

Best Python code snippet using fMBT_python

ManageVars.py

Source:ManageVars.py

1# -*- coding: utf-8 -*-2# Copyright 2015 Pietro Brunetti <pietro.brunetti@itb.cnr.it>3#4# Licensed under the Apache License, Version 2.0 (the "License");5# you may not use this file except in compliance with the License.6# You may obtain a copy of the License at7#8#    http://www.apache.org/licenses/LICENSE-2.0910# Unless required by applicable law or agreed to in writing, software11# distributed under the License is distributed on an "AS IS" BASIS,12# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.13# See the License for the specific language governing permissions and14# limitations under the License.1516""" Managing variable values """1718__authors__ = "Pietro Brunetti"1920import os2122import wx23import  wx.lib.filebrowsebutton as filebrowse24import wx.lib.agw.floatspin as FS2526from peptidome import fasta_indx2728import DialogCommons2930wildcard_f  = "Fasta File (*.fasta)|*.fasta|Aminoacids Fasta File(*.faa)|*.faa"3132class Dialog(wx.Dialog):33    """ Dialog for the variable managing"""34    def __init__(self, parent, ID, title, size=wx.DefaultSize,35                 pos=wx.DefaultPosition, style=wx.DEFAULT_DIALOG_STYLE):36        szr = DialogCommons.createMainSizer(self, parent, ID, title,37                                            pos, size, style)38        self._createMegabox(szr)39        DialogCommons.createBtnSizer(self, szr)40        self.SetSizer(szr)41        szr.Fit(self)424344    def _createMegabox(self, sizer):45        self.megabox = wx.BoxSizer(wx.VERTICAL)46        self._createFastaButton()47        self._createEnzymeChoice()48        self._createMissCutSpinCtrl()49        self._createDeltaPrecisionBox()50        self._setInitialState(self.megabox, sizer)5152    def _createFastaButton(self):53        fileDB = self.GetParent().fileDB54        if not fileDB.has_key("proteome"):55            self.fasta_path = os.path.expanduser("~")56        else:57            if not os.path.isfile(fileDB["proteome"]["fasta_path"]):58                self.fasta_path = os.path.expanduser("~")59            else:60                self.fasta_path = fileDB["proteome"]["fasta_path"]61        self.cF = filebrowse.FileBrowseButton(self,62                            labelText="Select a fasta file:",63                            fileMask=wildcard_f,64                            fileMode=wx.OPEN,65                            initialValue=self.fasta_path,66                            changeCallback = self._faCallback)6768        self.megabox.Add(self.cF, 0,69                         wx.GROW|wx.ALIGN_CENTER_VERTICAL|wx.ALL, 5)7071    def _createEnzymeChoice(self):72        self.st2 = wx.StaticText(self, -1, "Enzyme", (45, 15))73        enzymeList = ["No enzyme",74                      "Trypsin (K or R)",75                      "Trypsin (complex rule)",76                      "Pepsin (A, V, L, I, G, F, Y or W)",77                      "Proteinase K (F, Y, W or L)"]78        self.chEnz = wx.Choice(self, -1, (100, 50), choices = enzymeList)79        self._setHorizontal([self.st2, self.chEnz], self.megabox)80        self.Bind(wx.EVT_CHOICE, self._enable_misscut, self.chEnz)8182    def _enable_misscut(self, event):83        if self.chEnz.GetSelection() != 0:84            self.chMC.Enable(True)85        else:86            self.chMC.Enable(False)878889    def _createMissCutSpinCtrl(self):90        self.st = wx.StaticText(self, -1, "Miss-cleavage value",91                                (45, 15))92        self.chMC = wx.SpinCtrl(self, -1, "", (30, 50))93        self.chMC.SetRange(0,5)94        self.chMC.SetValue(0)95        self._setHorizontal([self.st, self.chMC], self.megabox)96        self.chMC.Enable(False)9798    def _createDeltaPrecisionBox(self):99        #self._createDigitsControl()100        self._createPrecisionControl()101102    def _createDigitsControl(self):103        self.sc = wx.SpinCtrl(self, -1, "", (30, 50))104        self.sc.SetRange(1, 5)105        self.sc.SetValue(3)106        sd = wx.Button(self, -1, "Set Digits")107        self.Bind(wx.EVT_BUTTON, self.SetDigits, sd)108        self._setHorizontal([self.sc, sd], self.megabox)109110    def _createPrecisionControl(self):111        label = wx.StaticText(self, -1, "Delta mass [Da]")112        self.floatspin = FS.FloatSpin(self, -1, min_val=0, max_val=1,113                                       increment=0.001, value=0.008)114                                       #, extrastyle=FS.FS_LEFT)115        self.floatspin.SetFormat("%f")116        self.floatspin.SetDigits(3)117        self.floatspin.SetIncrement(10**(-3))118        self._setHorizontal([label, self.floatspin], self.megabox)119120    def _setHorizontal(self, ctrls, biggerBox):121        box = wx.BoxSizer(wx.HORIZONTAL)122        for each in ctrls:123            box.Add(each)124        biggerBox.Add(box, 0, wx.GROW|wx.ALIGN_CENTER_VERTICAL|wx.ALL, 5)125126    def _setInitialState(self, megabox, sizer):127        sizer.Add(megabox, 0, wx.GROW|wx.ALIGN_CENTER_VERTICAL|wx.ALL, 5)128129    def _faCallback(self, evt):130        self.fasta_path = evt.GetString()131132    def SetDigits(self, evt):133        """134        Set digits of precision135        """136        self.floatspin.SetValue(0.0)137        power = self.sc.GetValue()138        self.floatspin.SetDigits(power)139        self.floatspin.SetIncrement (10**-(power))140141142    def GetValue(self):143        #TO-DO: check if self.fasta_path is a valid file144        self.values = {}145        # the path fasta file is in Saf.name <-146        # but project does not report the name147        # use for the moment148        # >>> saf_obj = fileDB["proteome"]149        # >>> saf_obj.name = fileDB["fasta"]150        self.values["proteome"] = fasta_indx.Saf(self.fasta_path, window=True)151        self.values["delta"] = self.floatspin.GetValue()*(10**5)152153        self.values["enzyme"] = self.chEnz.GetSelection()154155        self.values["enzyme_exception"] = None156        self.values["miscut"] = self.chMC.GetValue()157        return self.values158159if __name__ == "__main__":160    app = wx.App()161    Dialog(None, -1, "Test")
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Day 17a.py

Source:Day 17a.py

1puzzle_input = open("AdventOfCode2020/Day 17/puzzleinput.txt").read().splitlines()2test_input = open("AdventOfCode2020/Day 17/testinput.txt").read().splitlines()3from itertools import product4def FindAdjacent(coordinate,cubes):5    x,y,z = coordinate6    return [(x + dx,y + dy,z + dz) for dx,dy,dz in list(product([-1,0,1],repeat=3)) if (x + dx, y + dy, z + dz) in cubes and not (dx == dy == dz == 0)]7def CountAdjacent(coordinate,cubes,char):8    count = 09    for c in FindAdjacent(coordinate,cubes):10        count += (cubes[c] == char)11    return count12def Step(cubes, coordinates, xspan):13    newcubes = cubes.copy()14    biggerbox = set(product([x for x in range(xspan[0],xspan[1] + 1)],repeat=3))15    newcoordinates = biggerbox.difference(coordinates)16    for cd in newcoordinates:17        newcubes[cd] = "."18    coordinates = biggerbox.copy()19    if (3,3,-1) in newcoordinates:20        print("I'm new!")21        print(sorted(newcoordinates))22    for coordinate in coordinates:23        if coordinate in newcoordinates:24            if CountAdjacent(coordinate,cubes,"#") == 3:25                newcubes[coordinate] = "#"26        elif cubes[coordinate] == "#":27            if CountAdjacent(coordinate,cubes,"#") in [2,3]:28                newcubes[coordinate] = "#"29            else:30                newcubes[coordinate] = "."31        else:32            if CountAdjacent(coordinate,cubes,"#") == 3:33                newcubes[coordinate] = "#"34            else:35                newcubes[coordinate] = "."36    return newcubes, coordinates37def Display(cubes):38    for z in range(z_span[0],z_span[1]+1):39        for y in range(y_span[0],y_span[1]+1):40            for x in range(x_span[0],x_span[1]+1):41                print(cubes[(x,y,z)],end='')42            print()43        print()44states = dict()45x_span = (0,7)46y_span = (0,7)47z_span = (0,0)48coordinates = set(product([x for x in range(x_span[0],x_span[1] + 1)],repeat=3))49for coordinate in coordinates:50    states[coordinate] = '.'51for i,row in enumerate(puzzle_input):52    for j,state in enumerate(row):53        states[(j,i,0)] = state54Display(states)55for i in range(6):56    x_span = (x_span[0] - 1, x_span[1] + 1)57    y_span = (y_span[0] - 1, y_span[1] + 1)58    z_span = (z_span[0] - 1, z_span[1] + 1)59    states, coordinates = Step(states, coordinates, x_span)60    print("Step:",i)61    #Display(states)...

Day 17b.py

Source:Day 17b.py

1puzzle_input = open("AdventOfCode2020/Day 17/puzzleinput.txt").read().splitlines()2test_input = open("AdventOfCode2020/Day 17/testinput.txt").read().splitlines()3from itertools import product4def FindAdjacent(coordinate,cubes):5    x,y,z,w = coordinate6    return [(x + dx,y + dy,z + dz,w + dw) for dx,dy,dz,dw in list(product([-1,0,1],repeat=4)) if (x + dx, y + dy, z + dz, w + dw) in cubes and not (dx == dy == dz == dw == 0)]7def CountAdjacent(coordinate,cubes,char):8    count = 09    for c in FindAdjacent(coordinate,cubes):10        count += (cubes[c] == char)11    return count12def Step(cubes, coordinates, xspan):13    newcubes = cubes.copy()14    biggerbox = set(product([x for x in range(xspan[0],xspan[1] + 1)],repeat=4))15    newcoordinates = biggerbox.difference(coordinates)16    for cd in newcoordinates:17        newcubes[cd] = "."18    coordinates = biggerbox.copy()19    for coordinate in coordinates:20        if coordinate in newcoordinates:21            if CountAdjacent(coordinate,cubes,"#") == 3:22                newcubes[coordinate] = "#"23        elif cubes[coordinate] == "#":24            if CountAdjacent(coordinate,cubes,"#") in [2,3]:25                newcubes[coordinate] = "#"26            else:27                newcubes[coordinate] = "."28        else:29            if CountAdjacent(coordinate,cubes,"#") == 3:30                newcubes[coordinate] = "#"31            else:32                newcubes[coordinate] = "."33    return newcubes, coordinates34def Display(cubes):35    for z in range(z_span[0],z_span[1]+1):36        for y in range(y_span[0],y_span[1]+1):37            for x in range(x_span[0],x_span[1]+1):38                print(cubes[(x,y,z)],end='')39            print()40        print()41states = dict()42x_span = (0,7)43y_span = (0,7)44z_span = (0,0)45w_span = (0,0)46coordinates = set(product([x for x in range(x_span[0],x_span[1] + 1)],repeat=4))47for coordinate in coordinates:48    states[coordinate] = '.'49for i,row in enumerate(puzzle_input):50    for j,state in enumerate(row):51        states[(j,i,0,0)] = state52#Display(states)53for i in range(6):54    x_span = (x_span[0] - 1, x_span[1] + 1)55    y_span = (y_span[0] - 1, y_span[1] + 1)56    z_span = (z_span[0] - 1, z_span[1] + 1)57    w_span = (w_span[0] - 1, w_span[1] + 1)58    states, coordinates = Step(states, coordinates, x_span)59    print("Step:",i)60    #Display(states)...

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