How to use test_reference_names method in avocado

Best Python code snippet using avocado_python Github


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...51 })52def test_variant_collection_groupby_gene_name():53 gene_names = set(ov_wustle_variants.groupby_gene_name().keys())54 eq_(gene_names, {"AGL", "SASS6", "LRRC39", "UBE4B", "COL11A1"})55def test_reference_names():56 eq_(ov_wustle_variants.reference_names(), {"GRCh37"})57def test_to_string():58 string_repr = str(ov_wustle_variants)59 assert "start=10238758, ref='G', alt='C'" in string_repr, \60 "Expected variant g.10238758 G>C in __str__:\n%s" % (61 string_repr,)62def test_detailed_string():63 detailed_string = ov_wustle_variants.detailed_string()64 # expect one of the gene names from the MAF to be in the summary string65 assert "UBE4B" in detailed_string, \66 "Expected gene name UBE4B in detailed_string():\n%s" % detailed_string67 assert "start=10238758, ref='G', alt='C'" in detailed_string, \68 "Expected variant g.10238758 G>C in detailed_string():\n%s" % (69 detailed_string,)...

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...35 resolutions = res[0].resolutions36 self.assertEqual(len(resolutions), 1)37 self.assertIsInstance(resolutions[0], Runnable)38 @skipUnlessPathExists('/bin/true')39 def test_reference_names(self):40 res = self.good_hint.get_resolutions()[0]41 self.assertEqual(res.reference, '/bin/true')42 self.assertEqual(res.resolutions[0].uri, '/bin/true')43if __name__ == '__main__':...

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