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How to use test_set_target method in avocado

Best Python code snippet using avocado_python

test_optimizer.py

Source:test_optimizer.py

1import numpy as np2import unittest3from icet.fitting import Optimizer4class TestOptimizer(unittest.TestCase):5    """Unittest class for Optimizer."""6    def __init__(self, *args, **kwargs):7        super().__init__(*args, **kwargs)8        self.n_rows = 2009        self.n_cols = 5010        self.tol = 1.0 / self.n_rows11        # set up dummy linear problem data12        self.A = np.random.normal(0, 1, (self.n_rows, self.n_cols))13        self.x = np.random.normal(0, 5, (self.n_cols, ))14        self.noise = np.random.normal(0, 0.1, (self.n_rows, ))15        self.y = np.dot(self.A, self.x) + self.noise16    def shortDescription(self):17        """Prevents unittest from printing docstring in test cases."""18        return None19    def test_get_rows_via_sizes(self):20        """Tests _get_rows_via_sizes functionality."""21        opt = Optimizer((self.A, self.y))22        # test with only train_size defined23        train_size, test_size = int(0.8 * self.n_rows), None24        train_set, test_set = opt._get_rows_via_sizes(train_size, test_size)25        self.assertEqual(train_size, len(train_set))26        self.assertEqual(self.n_rows - train_size, len(test_set))27        # test with only test_size defined28        train_size, test_size = None, int(0.8 * self.n_rows)29        train_set, test_set = opt._get_rows_via_sizes(train_size, test_size)30        self.assertEqual(test_size, len(test_set))31        self.assertEqual(self.n_rows - test_size, len(train_set))32        # test with both defined33        train_size, test_size = int(0.8 * self.n_rows), int(0.15 * self.n_rows)34        train_set, test_set = opt._get_rows_via_sizes(train_size, test_size)35        self.assertEqual(train_size, len(train_set))36        self.assertEqual(test_size, len(test_set))37        # test with fractions38        train_size, test_size = 0.7, 0.239        train_set, test_set = opt._get_rows_via_sizes(train_size, test_size)40        self.assertLess(abs(train_size*self.n_rows - len(train_set)), self.tol)41        self.assertLess(abs(test_size*self.n_rows - len(test_set)), self.tol)42        # test edge case with full training set43        test_size = None44        for train_size in [1.0, self.n_rows]:45            train_set, test_set = opt._get_rows_via_sizes(46                train_size, test_size)47            self.assertEqual(len(train_set), self.n_rows)48            self.assertIsNone(test_set)49        # test invalid sizes50        with self.assertRaises(ValueError):51            train_size, test_size = None, 1.052            opt._get_rows_via_sizes(train_size, test_size)53        with self.assertRaises(ValueError):54            train_size, test_size = None, None55            opt._get_rows_via_sizes(train_size, test_size)56    def test_get_rows_from_indices(self):57        """Tests _get_rows_from_indices."""58        opt = Optimizer((self.A, self.y))59        all_rows = np.arange(self.n_rows)60        train_size = int(0.8 * self.n_rows)61        train_set_target = np.random.choice(62            all_rows, train_size, replace=False)63        test_set_target = sorted(np.setdiff1d(all_rows, train_set_target))64        # specify only train_set, test set should default to remaining rows65        train_set, test_set = opt._get_rows_from_indices(66            train_set_target, None)67        self.assertSequenceEqual(sorted(train_set_target), sorted(train_set))68        self.assertSequenceEqual(sorted(test_set_target), sorted(test_set))69        # specify only test_set, train set should default to remaining rows70        train_set, test_set = opt._get_rows_from_indices(None, test_set_target)71        self.assertSequenceEqual(sorted(train_set_target), sorted(train_set))72        self.assertSequenceEqual(sorted(test_set_target), sorted(test_set))73        # specify partial sets meaning not all rows are used74        train_set_target = np.delete(train_set_target, [0, 1, 2])75        test_set_target = np.delete(test_set_target, [0, 1, 2])76        train_set, test_set = opt._get_rows_from_indices(77            train_set_target, test_set_target)78        self.assertSequenceEqual(sorted(train_set_target), sorted(train_set))79        self.assertSequenceEqual(sorted(test_set_target), sorted(test_set))80        # test invalid input81        with self.assertRaises(ValueError):82            opt._get_rows_from_indices(None, None)83    def test_setup_rows(self):84        """85        Tests _setup_rows.86        Simply test that function raise when no training data available87        """88        opt = Optimizer((self.A, self.y))89        # no training data from train_size90        with self.assertRaises(ValueError):91            train_size, test_size = 0, 0.592            opt._setup_rows(train_size, test_size, None, None)93        # no training data from train_set94        with self.assertRaises(ValueError):95            train_set, test_set = [], np.arange(0, int(0.5*self.n_rows))96            opt._setup_rows(None, None, train_set, test_set)97        # overlapping indices in train_set and test_set98        with self.assertRaises(ValueError):99            train_set, test_set = [1, 2, 3, 4, 5], [5, 6, 7, 8, 9, 10]100            opt._setup_rows(None, None, train_set, test_set)101    def test_train(self):102        """Tests train."""103        # with test set104        train_size = 0.75105        opt = Optimizer((self.A, self.y), train_size=train_size)106        self.assertIsNone(opt._rmse_train)107        self.assertIsNone(opt._rmse_test)108        self.assertIsNone(opt.train_scatter_data)109        self.assertIsNone(opt.test_scatter_data)110        opt.train()111        self.assertIsNotNone(opt._rmse_train)112        self.assertIsNotNone(opt._rmse_test)113        self.assertIsNotNone(opt.train_scatter_data)114        self.assertIsNotNone(opt.test_scatter_data)115        # without testing116        train_size = 1.0117        opt = Optimizer((self.A, self.y), train_size=train_size)118        self.assertIsNone(opt._rmse_train)119        self.assertIsNone(opt._rmse_test)120        self.assertIsNone(opt.train_scatter_data)121        self.assertIsNone(opt.test_scatter_data)122        opt.train()123        self.assertIsNotNone(opt._rmse_train)124        self.assertIsNone(opt._rmse_test)125        self.assertIsNotNone(opt.train_scatter_data)126        self.assertIsNone(opt.test_scatter_data)127    def test_summary_property(self):128        """Tests summary property."""129        # without having trained130        opt = Optimizer((self.A, self.y))131        self.assertIsInstance(opt.summary, dict)132        # with having trained133        opt.train()134        self.assertIsInstance(opt.summary, dict)135        self.assertIn('rmse_train', opt.summary.keys())136        self.assertIn('rmse_test', opt.summary.keys())137    def test_repr(self):138        """Tests repr dunder."""139        opt = Optimizer((self.A, self.y))140        self.assertIsInstance(repr(opt), str)141    def test_size_properties(self):142        """Tests the properties in regards to training/test sets and sizes."""143        # test without test_set144        train_set = np.arange(0, self.n_rows)145        opt = Optimizer((self.A, self.y), train_set=train_set)146        self.assertSequenceEqual(opt.train_set.tolist(), train_set.tolist())147        self.assertEqual(len(train_set), opt.train_size)148        self.assertEqual(1.0, opt.train_fraction)149        self.assertIsNone(opt.test_set)150        self.assertEqual(opt.test_size, 0)151        self.assertEqual(opt.test_fraction, 0)152        # test with test set153        test_set = np.arange(int(0.7 * self.n_rows), int(0.8 * self.n_rows))154        opt = Optimizer((self.A, self.y), test_set=test_set)155        self.assertSequenceEqual(test_set.tolist(), opt.test_set.tolist())156        self.assertEqual(opt.test_size, len(test_set))157        self.assertAlmostEqual(opt.test_fraction, len(test_set) / self.n_rows)158    def test_zero_error_with_least_square_fit(self):159        """ Test that the error is zero if training without noise and with160        least-squares. """161        # set up dummy linear problem data162        for standardize in [True, False]:163            y = np.dot(self.A, self.x)164            opt = Optimizer((self.A, y), fit_method='least-squares', standardize=standardize)165            opt.train()166            self.assertAlmostEqual(opt.rmse_train, 0.0)167            self.assertAlmostEqual(opt.rmse_test, 0.0)168            self.assertAlmostEqual(np.abs(self.x - opt.parameters).max(), 0)169if __name__ == '__main__':...

week11.py

Source:week11.py

1from __future__ import division2import hashlib3import json4from sklearn.ensemble import RandomForestClassifier as rfc5directory = "data/"6def bag_of_words(lines):7    uniq = set()8    for line in lines:9        # Iterate over all words10        for word in line[0].split():11            # Put words not already found into dictionary12            uniq.add(word)13    uniq_dict = {}14    for j, word in enumerate(uniq):15        uniq_dict[word] = j16    uniq_len = len(uniq)17    # Use word dictionary to create bag-of-words18    bag = []19    for line in lines:20        vec = [0] * uniq_len21        for word in line[0].split():22            vec[uniq_dict[word]] += 123        bag.append((vec, (1 if 'earn' in line[1] else 0)))24    return bag25def bag_of_words_feature_hashed(lines, N):26    uniq = set()27    for line in lines:28        # Iterate over all words29        for word in line[0].split():30            # Put words not already found into dictionary31            uniq.add(word)32    uniq_dict = {}33    for j, word in enumerate(uniq):34        uniq_dict[word] = j35    # Use word dictionary to create bag-of-words36    bag = []37    for line in lines:38        vec = [0] * N39        for word in line[0].split():40            h = int(hashlib.md5(word).hexdigest(), 16) % N41            vec[h] += 142        bag.append((vec, (1 if 'earn' in line[1] else 0)))43    return bag44if __name__ == "__main__":45    articles = []46    for i in range(21):47        f = open(directory + "reuters-0" + (str(i) if i >= 10 else "0" + str(i)) + ".json", 'r')48        articles += json.loads(f.read())49        f.close()50    articles = reduce(lambda x, y: x + ([y] if ('topics' in y.keys())51                                               and ('body' in y.keys())52                                               and (len(y['topics']) > 0)53                                               and (len(y['body']) > 0)54                                            else []), articles, [])55    lines = map(lambda x: (x['body'].lower().encode('ascii', errors='ignore'), x['topics']), articles)56    print "Calcualting bag of words."57    bow = bag_of_words(lines)58    print "Amount of lines: " + str(len(bow))59    print "Amount of words: " + str(len(bow[0][0]))60    training_set = bow[:int(round(len(bow)*0.8))]61    training_set_data = [row[0] for row in training_set]62    training_set_target = [row[1] for row in training_set]63    test_set = bow[-int(round(len(bow)*0.2)):]64    test_set_data = [row[0] for row in test_set]65    test_set_target = [row[1] for row in test_set]66    classifier = rfc(n_estimators=50)67    classifier.fit(training_set_data, training_set_target)68    predictions = classifier.predict(test_set_data)69    accuracy = []70    for i, prediction in enumerate(predictions):71        accuracy += [test_set_target[i] == prediction]72    accuracy = (accuracy.count(True) / len(test_set_target)) * 10073    print "Accuracy of classifier: " + str(accuracy) + "%"74    print "\nCalculating bag of words using feature hashing."75    bow = bag_of_words_feature_hashed(lines, 1000)76    print "Amount of lines: " + str(len(bow))77    print "Amount of words: " + str(len(bow[0][0]))78    training_set = bow[:int(round(len(bow)*0.8))]79    training_set_data = [row[0] for row in training_set]80    training_set_target = [row[1] for row in training_set]81    test_set = bow[-int(round(len(bow)*0.2)):]82    test_set_data = [row[0] for row in test_set]83    test_set_target = [row[1] for row in test_set]84    classifier = rfc(n_estimators=50)85    classifier.fit(training_set_data, training_set_target)86    predictions = classifier.predict(test_set_data)87    accuracy = []88    for i, prediction in enumerate(predictions):89        accuracy += [test_set_target[i] == prediction]90    accuracy = (accuracy.count(True) / len(test_set_target)) * 100...

evaluate_digit_classifier.py

Source:evaluate_digit_classifier.py

1import numpy as np2from sklearn import datasets3# initialize test set4def load_digits_and_test_set(test_start=0, test_count=1000):5    global digits6    global t_start, t_count, t_end7    global test_set_images, test_set_target8    digits = datasets.load_digits()9    t_images = len(digits.images)10    t_start = test_start11    t_count = test_count12    t_end = t_start + t_count13    if (t_images < t_end):14        t_end = t_images15    test_set_images = digits.images[t_start:t_end]16    test_set_target = digits.target[t_start:t_end]17    return len(test_set_images)18# test classifier over test set19def test_digit_classifier(classifier):20    digits = datasets.load_digits()21    correct = 022    print(f'test classifier for {t_count} images: {t_start} to {t_end-1}.')23    for img, target in zip(test_set_images, test_set_target):24        v = np.matrix.flatten(img) / 15.25        output = classifier(v)26        answer = list(output).index(max(output))27        if answer == target:28            correct += 129    return (correct/t_count)30# calculate total cost for classifier over test set31def y_vec(digit):32    return np.array([1 if i == digit else 0 for i in range(0,10)])33def cost_one(classifier,x,i):34    return sum([(classifier(x)[j] - y_vec(i)[j])**2 for j in range(10)])35def calculate_total_cost(classifier):36    digits = datasets.load_digits()37    print(f'calculate total cost for {t_count} images: {t_start} to {t_end-1}.')38    x = np.array([np.matrix.flatten(img) for img in test_set_images]) / 15.039    y = test_set_target...

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