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How to use verify_output method in grail

Best Python code snippet using grail_python

check_model_test.py

Source:check_model_test.py

...12            stdout=subprocess.PIPE, stderr=subprocess.STDOUT13        )14        output = run_result.stdout.decode('utf8')15        return run_result.returncode, output16    def verify_output(self, output: str, *args) -> bool:17        try:18            for s in args:19                self.assertNotEqual(output.find(s), -1, f"output does not contain '{s}'; got:\n{output}")20        except AssertionError:21            print(output)22            raise23    def test_model_not_found(self):24        retcode, output = self.run_check_model('does_not_exist.py')25        self.verify_output(output, "MODEL FILE")26        self.assertNotEqual(retcode, 0)27    def test_data_not_found(self):28        retcode, output = self.run_check_model('simple_gauss_model.py', data_file='does_not_exist')29        self.verify_output(output, "DATA FILE")30        self.assertNotEqual(retcode, 0)31    def test_postprocess_broken(self):32        retcode, output = self.run_check_model('postprocess_broken.py')33        self.verify_output(output, "POSTPROCESSING", "KeyError")34        self.assertNotEqual(retcode, 0)35    def test_postprocess_old_style_broken(self):36        retcode, output = self.run_check_model('postprocess_broken.py')37        self.verify_output(output, "POSTPROCESSING", "KeyError")38        self.assertNotEqual(retcode, 0)39    def test_postprocess_old_style_wrong_returns(self):40        retcode, output = self.run_check_model('postprocess_old_style_wrong_returns.py')41        self.verify_output(output, "POSTPROCESSING", "must return")42        self.assertNotEqual(retcode, 0)43    def test_postprocess_wrong_returns(self):44        retcode, output = self.run_check_model('postprocess_wrong_returns.py')45        self.verify_output(output, "POSTPROCESSING", "must return")46        self.assertNotEqual(retcode, 0)47    def test_postprocess_wrong_signature(self):48        retcode, output = self.run_check_model('postprocess_wrong_signature.py')49        self.verify_output(output, "POSTPROCESSING", "as argument")50        self.assertNotEqual(retcode, 0)51    def test_preprocess_broken(self):52        retcode, output = self.run_check_model('preprocess_broken.py')53        self.verify_output(output, "PREPROCESSING", "KeyError")54        self.assertNotEqual(retcode, 0)55    def test_preprocess_wrong_returns(self):56        retcode, output = self.run_check_model('preprocess_wrong_returns.py')57        self.verify_output(output, "PREPROCESSING", "must return")58        self.assertNotEqual(retcode, 0)59    def test_preprocess_wrong_signature(self):60        retcode, output = self.run_check_model('preprocess_wrong_signature.py')61        self.verify_output(output, "PREPROCESSING", "as argument")62        self.assertNotEqual(retcode, 0)63    def test_preprocess_returns_array(self):64        retcode, output = self.run_check_model('preprocess_returns_array.py')65        self.verify_output(output, "PREPROCESSING", "must return")66        self.assertNotEqual(retcode, 0)67    def test_broken_model(self):68        retcode, output = self.run_check_model('simple_gauss_model_broken.py')69        self.verify_output(output, "MODEL", "NameError")70        self.assertNotEqual(retcode, 0)71    def test_no_none_model(self):72        retcode, output = self.run_check_model('simple_gauss_model_no_none.py')73        self.verify_output(output, "MODEL", "None for synthesising data")74        self.assertNotEqual(retcode, 0)75    def test_no_num_obs_total_model(self):76        retcode, output = self.run_check_model('simple_gauss_model_no_num_obs_total.py')77        self.verify_output(output, "MODEL", "num_obs_total")78        self.assertNotEqual(retcode, 0)79    def test_syntax_error(self):80        retcode, output = self.run_check_model('syntax_error.py')81        self.verify_output(output, "PARSE", "SyntaxError")82        self.assertNotEqual(retcode, 0)83    def test_new_model_old_postprocess(self):84        retcode, output = self.run_check_model('new_model_old_postprocess.py')85        self.verify_output(output, "POSTPROCESSING", "postprocessing function with a single argument", "'x'")86        self.assertNotEqual(retcode, 0)87    def test_simple_working_model(self):88        retcode, output = self.run_check_model('simple_gauss_model.py')89        self.verify_output(output, "okay")90        self.assertEqual(retcode, 0)91    def test_model_not_a_function(self):92        retcode, output = self.run_check_model('model_not_a_function.py')93        self.verify_output(output, "MODEL", "PARSE", "must be a function")94        self.assertNotEqual(retcode, 0)95    def test_model_factory(self):96        retcode, output = self.run_check_model('model_factory.py')97        self.verify_output(output, "okay")98        self.assertEqual(retcode, 0)99    def test_model_factory_with_guide(self):100        retcode, output = self.run_check_model('model_factory_with_guide.py')101        self.verify_output(output, "okay")102        self.assertEqual(retcode, 0)103    def test_model_factory_with_autoguide(self):104        retcode, output = self.run_check_model('model_factory_with_autoguide.py')105        self.verify_output(output, "okay")106        self.assertEqual(retcode, 0)107    def test_model_factory_broken(self):108        retcode, output = self.run_check_model('model_factory_broken.py')109        self.verify_output(output, "FACTORY", "AttributeError", "unspecified_arg")110        self.assertNotEqual(retcode, 0)111    def test_model_factory_wrong_signature(self):112        retcode, output = self.run_check_model('model_factory_wrong_signature.py')113        self.verify_output(output, "FACTORY", "as argument")114        self.assertNotEqual(retcode, 0)115    def test_model_factory_wrong_returns(self):116        retcode, output = self.run_check_model('model_factory_wrong_returns_none.py')117        self.verify_output(output, "FACTORY", "either a model function or a tuple")...

test_wlm_helper_functions.py

Source:test_wlm_helper_functions.py

...8# defined, the tests in this file are skipped.9def test_get_hosts(alloc_specs):10    if not alloc_specs:11        pytest.skip("alloc_specs not defined")12    def verify_output(output):13        assert isinstance(output, list)14        assert all(isinstance(host, str) for host in output)15        if "host_list" in alloc_specs:16            assert output == alloc_specs["host_list"]17    if pytest.test_launcher == "slurm":18        if "SLURM_JOBID" in os.environ:19            verify_output(wlm.get_hosts())20        else:21            with pytest.raises(SmartSimError):22                wlm.get_hosts()23    elif pytest.test_launcher == "pbs":24        if "PBS_JOBID" in os.environ:25            verify_output(wlm.get_hosts())26        else:27            with pytest.raises(SmartSimError):28                wlm.get_hosts()29    else:30        with pytest.raises(SSUnsupportedError):31            wlm.get_hosts(launcher=pytest.test_launcher)32def test_get_queue(alloc_specs):33    if not alloc_specs:34        pytest.skip("alloc_specs not defined")35    def verify_output(output):36        assert isinstance(output, str)37        if "queue" in alloc_specs:38            assert output == alloc_specs["queue"]39    if pytest.test_launcher == "slurm":40        if "SLURM_JOBID" in os.environ:41            verify_output(wlm.get_queue())42        else:43            with pytest.raises(SmartSimError):44                wlm.get_queue()45    elif pytest.test_launcher == "pbs":46        if "PBS_JOBID" in os.environ:47            verify_output(wlm.get_queue())48        else:49            with pytest.raises(SmartSimError):50                wlm.get_queue()51    else:52        with pytest.raises(SSUnsupportedError):53            wlm.get_queue(launcher=pytest.test_launcher)54def test_get_tasks(alloc_specs):55    if not alloc_specs:56        pytest.skip("alloc_specs not defined")57    def verify_output(output):58        assert isinstance(output, int)59        if "num_tasks" in alloc_specs:60            assert output == alloc_specs["num_tasks"]61    if pytest.test_launcher == "slurm":62        if "SLURM_JOBID" in os.environ:63            verify_output(wlm.get_tasks())64        else:65            with pytest.raises(SmartSimError):66                wlm.get_tasks(launcher=pytest.test_launcher)67    elif pytest.test_launcher == "pbs":68        if "PBS_JOBID" in os.environ and which("qstat"):69            verify_output(wlm.get_tasks())70        elif "PBS_JOBID" in os.environ:71            with pytest.raises(LauncherError):72                wlm.get_tasks()73        else:74            with pytest.raises(SmartSimError):75                wlm.get_tasks()76    else:77        with pytest.raises(SSUnsupportedError):78            wlm.get_tasks(launcher=pytest.test_launcher)79def test_get_tasks_per_node(alloc_specs):80    if not alloc_specs:81        pytest.skip("alloc_specs not defined")82    def verify_output(output):83        assert isinstance(output, dict)84        assert all(85            isinstance(node, str) and isinstance(ntasks, int)86            for node, ntasks in output.items()87        )88        if "tasks_per_node" in alloc_specs:89            assert output == alloc_specs["tasks_per_node"]90    if pytest.test_launcher == "slurm":91        if "SLURM_JOBID" in os.environ:92            verify_output(wlm.get_tasks_per_node())93        else:94            with pytest.raises(SmartSimError):95                wlm.get_tasks_per_node()96    elif pytest.test_launcher == "pbs":97        if "PBS_JOBID" in os.environ and which("qstat"):98            verify_output(wlm.get_tasks_per_node())99        elif "PBS_JOBID" in os.environ:100            with pytest.raises(LauncherError):101                wlm.get_tasks_per_node()102        else:103            with pytest.raises(SmartSimError):104                wlm.get_tasks_per_node()105    else:106        with pytest.raises(SSUnsupportedError):...

test.py

Source:test.py

...21        return_value = expected_result in output22    else:23        return_value = False24    return return_value25def verify_output(result, expected_result) -> bool:26    if result.returncode != 0:27        print(result.stderr.decode("utf-8"))28        print(f"Error: Error Code : {result.returncode}")29        return False30    output = result.stdout.decode("utf-8")31    print("Result:")32    print(output)33    if re.match(expected_result, repr(output)):34        print(output)35        return True36    print(rf"Expected Result: {expected_result}")37    print(rf"Actual Result: {repr(output)}")38    return False39def test_citus():40    assert verify_output(run_with_output('pg_ctl -D citus -o "-p 9700" -l citus/citus_logfile start'),41                         r"^'waiting for server to start.... done\\nserver started\\n'$")42    assert verify_output(run_with_output('psql -p 9700 -c "CREATE EXTENSION citus;"'), r"^'CREATE EXTENSION\\n'$")43    assert verify_output(run_with_output('psql -p 9700 -c "select version();"'),44                         rf".*PostgreSQL {POSTGRES_VERSION}.* on x86_64-pc-linux-gnu, compiled by gcc \(.*")45    # Since version info for ol and el 7 contains undefined, undefined was needed to add as expected param for pc46    assert verify_output(run_with_output('psql -p 9700 -c "select citus_version();"'),...

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