Test your AI Agents with the all-new Agent to Agent Testing Platform.Learn More

How to use _switch method in lisa

Best Python code snippet using lisa_python

repository_rules.bzl

Source:repository_rules.bzl

...99    rules = {}100    #101    # Common102    #103    rules["proto_library_with_info"] = _switch(104        gapic,105        "@com_google_api_codegen//rules_gapic:gapic.bzl",106    )107    rules["moved_proto_library"] = _switch(108        gapic,109        "@com_google_api_codegen//rules_gapic:gapic.bzl",110    )111    #112    # Java113    #114    rules["java_proto_library"] = _switch(115        java,116        "native.java_proto_library",117    )118    rules["java_grpc_library"] = _switch(119        java and grpc,120        "@io_grpc_grpc_java//:java_grpc_library.bzl",121    )122    rules["java_gapic_library"] = _switch(123        java and grpc and gapic,124        "@com_google_api_codegen//rules_gapic/java:java_gapic.bzl",125    )126    rules["java_resource_name_proto_library"] = _switch(127        java and grpc and gapic,128        "@com_google_api_codegen//rules_gapic/java:java_gapic.bzl",129    )130    rules["java_gapic_test"] = _switch(131        java and grpc and gapic,132        "@com_google_api_codegen//rules_gapic/java:java_gapic.bzl",133    )134    rules["java_gapic_assembly_gradle_pkg"] = _switch(135        java and grpc and gapic,136        "@com_google_api_codegen//rules_gapic/java:java_gapic_pkg.bzl",137    )138    #139    # Python140    #141    rules["py_proto_library"] = _switch(142        python,143        "@com_github_grpc_grpc//bazel:python_rules.bzl",144    )145    rules["py_grpc_library"] = _switch(146        python and grpc,147        "@com_github_grpc_grpc//bazel:python_rules.bzl",148    )149    rules["py_gapic_library"] = _switch(150        python and grpc and gapic,151        "@com_google_api_codegen//rules_gapic/python:py_gapic.bzl",152    )153    rules["py_gapic_assembly_pkg"] = _switch(154        python and grpc and gapic,155        "@com_google_api_codegen//rules_gapic/python:py_gapic_pkg.bzl",156    )157    rules["py_gapic_library2"] = _switch(158        python and grpc and gapic,159        "@gapic_generator_python//rules_python_gapic:py_gapic.bzl",160        "py_gapic_library",161    )162    rules["py_gapic_assembly_pkg2"] = _switch(163        python and grpc and gapic,164        "@gapic_generator_python//rules_python_gapic:py_gapic_pkg.bzl",165        "py_gapic_assembly_pkg",166    )167    #168    # Go169    #170    rules["go_proto_library"] = _switch(171        go,172        "@io_bazel_rules_go//proto:def.bzl",173    )174    rules["go_library"] = _switch(175        go,176        "@io_bazel_rules_go//go:def.bzl",177    )178    rules["go_test"] = _switch(179        go and grpc and gapic,180        "@io_bazel_rules_go//go:def.bzl",181    )182    rules["go_gapic_library"] = _switch(183        go and grpc and gapic,184        "@com_googleapis_gapic_generator_go//rules_go_gapic:go_gapic.bzl",185    )186    rules["go_gapic_assembly_pkg"] = _switch(187        go and grpc and gapic,188        "@com_googleapis_gapic_generator_go//rules_go_gapic:go_gapic_pkg.bzl",189    )190    #191    # C++192    #193    rules["cc_proto_library"] = _switch(194        cc,195        "native.cc_proto_library",196    )197    rules["cc_grpc_library"] = _switch(198        cc and grpc,199        "@com_github_grpc_grpc//bazel:cc_grpc_library.bzl",200    )201    rules["cc_gapic_library"] = _switch(False)202    #203    # PHP204    #205    rules["php_proto_library"] = _switch(206        php,207        "@com_google_api_codegen//rules_gapic/php:php_gapic.bzl",208    )209    rules["php_grpc_library"] = _switch(210        php and grpc,211        "@com_google_api_codegen//rules_gapic/php:php_gapic.bzl",212    )213    rules["php_gapic_library"] = _switch(214        php and grpc and gapic,215        "@com_google_api_codegen//rules_gapic/php:php_gapic.bzl",216    )217    rules["php_gapic_assembly_pkg"] = _switch(218        php and grpc and gapic,219        "@com_google_api_codegen//rules_gapic/php:php_gapic_pkg.bzl",220    )221    #222    # Node.js223    #224    rules["nodejs_gapic_library"] = _switch(225        nodejs and grpc and gapic,226        "@gapic_generator_typescript//rules_typescript_gapic:typescript_gapic.bzl",227        "typescript_gapic_library",228    )229    rules["nodejs_gapic_assembly_pkg"] = _switch(230        nodejs and grpc and gapic,231        "@gapic_generator_typescript//rules_typescript_gapic:typescript_gapic_pkg.bzl",232        "typescript_gapic_assembly_pkg",233    )234    #235    # Ruby236    #237    rules["ruby_proto_library"] = _switch(238        ruby,239        "@gapic_generator_ruby//rules_ruby_gapic:ruby_gapic.bzl",240    )241    rules["ruby_grpc_library"] = _switch(242        ruby and grpc,243        "@gapic_generator_ruby//rules_ruby_gapic:ruby_gapic.bzl",244    )245    rules["ruby_gapic_library"] = _switch(246        ruby and grpc and gapic,247        "@com_google_api_codegen//rules_gapic/ruby:ruby_gapic.bzl",248    )249    rules["ruby_ads_gapic_library"] = _switch(250        ruby and grpc and gapic,251        "@gapic_generator_ruby//rules_ruby_gapic:ruby_gapic.bzl",252    )253    rules["ruby_cloud_gapic_library"] = _switch(254        ruby and grpc and gapic,255        "@gapic_generator_ruby//rules_ruby_gapic:ruby_gapic.bzl",256    )257    rules["ruby_gapic_assembly_pkg"] = _switch(258        ruby and grpc and gapic,259        "@com_google_api_codegen//rules_gapic/ruby:ruby_gapic_pkg.bzl",260    )261    #262    # C#263    #264    rules["csharp_proto_library"] = _switch(265        csharp,266        "@gapic_generator_csharp//rules_csharp_gapic:csharp_gapic.bzl",267    )268    rules["csharp_grpc_library"] = _switch(269        csharp and grpc,270        "@gapic_generator_csharp//rules_csharp_gapic:csharp_gapic.bzl",271    )272    rules["csharp_gapic_library"] = _switch(273        csharp and grpc and gapic,274        "@gapic_generator_csharp//rules_csharp_gapic:csharp_gapic.bzl",275    )276    rules["csharp_gapic_assembly_pkg"] = _switch(277        csharp and grpc and gapic,278        "@gapic_generator_csharp//rules_csharp_gapic:csharp_gapic_pkg.bzl",279    )280    rules.update(rules_override)281    switched_rules(282        name = name,283        rules = rules,284    )285def _switch(enabled, enabled_value = "", actual_name = ""):286    if enabled:287        return [enabled_value, actual_name]288    else:...

_Dialign.py

Source:_Dialign.py

1# Copyright 2009 by Cymon J. Cox.  All rights reserved.2# This code is part of the Biopython distribution and governed by its3# license.  Please see the LICENSE file that should have been included4# as part of this package.5"""6Bio.Application command line for the multiple alignment program DIALIGN2-2.7http://bibiserv.techfak.uni-bielefeld.de/dialign/welcome.html8Citations:9B. Morgenstern (2004). DIALIGN: Multiple DNA and Protein Sequence Alignment10at BiBiServ. Nucleic Acids Research 32, W33-W36.11Last checked against version: 2.212"""13from Bio import Application14from Bio.Application import _Option, _Argument, _Switch, AbstractCommandline15class DialignCommandline(AbstractCommandline):16    """Command line wrapper for the multiple alignment program DIALIGN2-2."""17    def __init__(self, cmd="dialign2-2", **kwargs):18        self.program_name = cmd19        self.parameters = \20            [21            _Switch(["-afc", "afc"], ["input"],22                    "Creates additional output file '*.afc' " + \23                    "containing data of all fragments considered " + \24                    "for alignment WARNING: this file can be HUGE !"),25            _Switch(["-afc_v", "afc_v"], ["input"],26                    "Like '-afc' but verbose: fragments are explicitly " + \27                    "printed. WARNING: this file can be EVEN BIGGER !"),28            _Switch(["-anc", "anc"], ["input"],29                    "Anchored alignment. Requires a file <seq_file>.anc " + \30                    "containing anchor points."),31            _Switch(["-cs", "cs"], ["input"],32                    "If segments are translated, not only the `Watson " + \33                    "strand' but also the `Crick strand' is looked at."),34            _Switch(["-cw", "cw"], ["input"],35                    "Additional output file in CLUSTAL W format."),36            _Switch(["-ds", "ds"], ["input"],37                    "`dna alignment speed up' - non-translated nucleic acid " + \38                    "fragments are taken into account only if they start " + \39                    "with at least two matches. Speeds up DNA alignment at " + \40                    "the expense of sensitivity."),41            _Switch(["-fa", "fa"], ["input"],42                    "Additional output file in FASTA format."),43            _Switch(["-ff", "ff"], ["input"],44                    "Creates file *.frg containing information about all " + \45                    "fragments that are part of the respective optimal " + \46                    "pairwise alignmnets plus information about " + \47                    "consistency in the multiple alignment"),48            _Option(["-fn", "fn"], ["input"],49                    None,50                    0,51                    "Output files are named <out_file>.<extension>.",52                    0),53            _Switch(["-fop", "fop"], ["input"],54                    "Creates file *.fop containing coordinates of all " + \55                    "fragments that are part of the respective pairwise alignments."),56            _Switch(["-fsm", "fsm"], ["input"],57                    "Creates file *.fsm containing coordinates of all " + \58                    "fragments that are part of the final alignment"),59            _Switch(["-iw", "iw"], ["input"],60                    "Overlap weights switched off (by default, overlap " + \61                    "weights are used if up to 35 sequences are aligned). " + \62                    "This option speeds up the alignment but may lead " + \63                    "to reduced alignment quality."),64            _Switch(["-lgs", "lgs"], ["input"],65                    "`long genomic sequences' - combines the following " + \66                    "options: -ma, -thr 2, -lmax 30, -smin 8, -nta, -ff, " + \67                    "-fop, -ff, -cs, -ds, -pst "),68            _Switch(["-lgs_t", "lgs_t"], ["input"],69                    "Like '-lgs' but with all segment pairs assessed " + \70                    "at the peptide level (rather than 'mixed alignments' " + \71                    "as with the '-lgs' option). Therefore faster than " + \72                    "-lgs but not very sensitive for non-coding regions."),73            _Option(["-lmax", "lmax"], ["input"],74                    lambda x: isinstance(x, int),75                    0,76                    "Maximum fragment length = x  (default: x = 40 or " + \77                    "x = 120 for `translated' fragments). Shorter x " + \78                    "speeds up the program but may affect alignment quality.",79                    0),80            _Switch(["-lo", "lo"], ["input"],81                    "(Long Output) Additional file *.log with information " + \82                    "about fragments selected for pairwise alignment and " + \83                    "about consistency in multi-alignment proceedure."),84            _Switch(["-ma", "ma"], ["input"],85                    "`mixed alignments' consisting of P-fragments and " + \86                    "N-fragments if nucleic acid sequences are aligned."),87            _Switch(["-mask", "mask"], ["input"],88                    "Residues not belonging to selected fragments are " + \89                    "replaced by `*' characters in output alignment " + \90                    "(rather than being printed in lower-case characters)"),91            _Switch(["-mat", "mat"], ["input"],92                    "Creates file *mat with substitution counts derived " + \93                    "from the fragments that have been selected for alignment."),94            _Switch(["-mat_thr", "mat_thr"], ["input"],95                    "Like '-mat' but only fragments with weight score " + \96                    "> t are considered"),97            _Switch(["-max_link", "max_link"], ["input"],98                    "'maximum linkage' clustering used to construct " + \99                    "sequence tree (instead of UPGMA)."),100            _Switch(["-min_link", "min_link"], ["input"],101                    "'minimum linkage' clustering used."),102            _Option(["-mot", "mot"], ["input"],103                    None, 104                    0,105                    "'motif' option.",106                    0),107            _Switch(["-msf", "msf"], ["input"],108                    "Separate output file in MSF format."),109            _Switch(["-n", "n"], ["input"],110                    "Input sequences are nucleic acid sequences. " + \111                    "No translation of fragments."),112            _Switch(["-nt", "nt"], ["input"],113                    "Input sequences are nucleic acid sequences and " + \114                    "`nucleic acid segments' are translated to `peptide " + \115                    "segments'."),116            _Switch(["-nta", "nta"], ["input"],117                    "`no textual alignment' - textual alignment suppressed. " + \118                    "This option makes sense if other output files are of " + \119                    "intrest -- e.g. the fragment files created with -ff, " + \120                    "-fop, -fsm or -lo."),121            _Switch(["-o", "o"], ["input"],122                    "Fast version, resulting alignments may be slightly " + \123                    "different."),124            _Switch(["-ow", "ow"], ["input"],125                    "Overlap weights enforced (By default, overlap weights " + \126                    "are used only if up to 35 sequences are aligned since " + \127                    "calculating overlap weights is time consuming)."),128            _Switch(["-pst", "pst"], ["input"],129                    "'print status'. Creates and updates a file *.sta with " + \130                    "information about the current status of the program " + \131                    "run.  This option is recommended if large data sets " + \132                    "are aligned since it allows the user to estimate the " + \133                    "remaining running time."),134            _Switch(["-smin", "smin"], ["input"],135                    "Minimum similarity value for first residue pair " + \136                    "(or codon pair) in fragments. Speeds up protein " + \137                    "alignment or alignment of translated DNA fragments " + \138                    "at the expense of sensitivity."),139            _Option(["-stars", "stars"], ["input"],140                    lambda x: x in range(0,10),141                    0,142                    "Maximum number of `*' characters indicating degree " + \143                    "of local similarity among sequences. By default, no " + \144                    "stars are used but numbers between 0 and 9, instead.",145                    0),146            _Switch(["-stdo", "stdo"], ["input"],147                    "Results written to standard output."),148            _Switch(["-ta", "ta"], ["input"],149                    "Standard textual alignment printed (overrides " + \150                    "suppression of textual alignments in special " + \151                    "options, e.g. -lgs)"),152            _Option(["-thr", "thr"], ["input"],153                    lambda x: isinstance(x, int),154                    0,155                    "Threshold T = x.",156                    0),157            _Switch(["-xfr", "xfr"], ["input"],158                    "'exclude fragments' - list of fragments can be " + \159                    "specified that are NOT considered for pairwise alignment"),160            _Argument(["input"], ["input", "file"], None, 1,161                      "Input file name. Must be FASTA format")162            ]...

Automation Testing Tutorials

Learn to execute automation testing from scratch with LambdaTest Learning Hub. Right from setting up the prerequisites to run your first automation test, to following best practices and diving deeper into advanced test scenarios. LambdaTest Learning Hubs compile a list of step-by-step guides to help you be proficient with different test automation frameworks i.e. Selenium, Cypress, TestNG etc.