Unlock 30% off on Manual Testing Annual Plans this Holiday Season.

Copied to Clipboard!

How to use partial_resolve method in lisa

Best Python code snippet using lisa_python

resolve_layouts.py

Source:resolve_layouts.py

1#!/usr/bin/env python2from __future__ import print_function3from __future__ import division4import re5import sys6from collections import defaultdict7import argparse8gaf_path_pattern=re.compile(r"[<>][\w\-\_]+")9def transform_from_gaf(s):10    if s[0] == '>':11        return s[1:] + '+'12    elif s[0] == '<':13        return s[1:] + '-'14    assert(false)15def transform_to_gaf(s):16    if s[-1] == '+':17        return '>' + s[:-1]18    elif s[-1] == '-':19        return '<' + s[:-1]20    assert(false)21def process_path(l):22    if l[0] == '>' or l[0] == '<':23        return [transform_from_gaf(t) for t in gaf_path_pattern.findall(l)]24    else:25        return [t.strip() for t in l.split(',')]26parser = argparse.ArgumentParser(description="Recursive resolution of the layouts")27parser.add_argument("fragment_names", help="File with names of the fragments to resolve OR layout file OR .gfa file -- segment names will be extracted")28parser.add_argument("composition", help="File specifying composition of intermediate fragments")29parser.add_argument("--resolved-marker", help="String marking the nodes that got duplicated during repeat resolution (e.g. '_i'). Part of the name past the marker will be ignored.")30parser.add_argument("--partial-resolve", action="store_true", help="Allow 'partial' resolving of layout. By default fails if can't resolve down to path of <resolved-prefix>.* fragments")31parser.add_argument("--gaf-paths", action="store_true", help="Use GAF path format ([<>]-prefix instead of [+-]-suffix)")32parser.add_argument("--miniasm", help="File with miniasm layout via 'a' lines")33parser.add_argument("--resolved-prefix", default='read', help="Prefix of completely resolved elements")34args = parser.parse_args()35mapping=defaultdict(list)36usage=defaultdict(int)37if args.miniasm:38    print("Loading miniasm layout", file=sys.stderr)39    with open(args.miniasm, 'r') as miniasm_layout:40        for l in miniasm_layout:41            if not l.startswith('a'):42                continue43            s = l.split()44            assert s[0] == 'a'45            mapping[s[1]].append(s[3] + s[4])46    print("Loaded", file=sys.stderr)47print("Loading compression mappings", file=sys.stderr)48with open(args.composition, 'r') as compress_mapping:49    for l in compress_mapping:50        s = l.split()51        assert s[0] not in mapping52        mapping[s[0]] = process_path(s[1])53print("Loaded", file=sys.stderr)54names = []55if args.fragment_names.endswith('.gfa'):56    print("Loading fragment names from GFA file", file=sys.stderr)57    with open(args.fragment_names, 'r') as gfa_fn:58        for l in gfa_fn:59            if not l.startswith('S'):60                continue61            #TODO optimize for GFA with sequences62            s = l.split()63            assert s[0] == 'S'64            names.append(s[1])65    print("Loaded", file=sys.stderr)66else:67    print("Loading fragment info from text file", file=sys.stderr)68    with open(args.fragment_names, 'r') as fragment_handle:69        for l in fragment_handle:70            s = l.strip().split()71            names.append(s[0].strip())72            if len(s) > 1:73                mapping[s[0]] = process_path(s[1])74    print("Loaded", file=sys.stderr)75def opposite_sign(o):76    if o == '+':77        return '-'78    elif o == '-':79        return '+'80    assert False81def swap_sign(n_o):82    return n_o[:-1] + opposite_sign(n_o[-1])83def need_swap(n_o):84    if n_o[-1] == '+':85        return False86    elif n_o[-1] == '-':87        return True88    assert False89def resolve(n_o, resolved):90    if n_o.startswith(args.resolved_prefix):91        resolved.append(n_o)92        return93    name = n_o[:-1]94    if args.resolved_marker:95        pos=name.find(args.resolved_marker)96        assert pos != 097        if pos > 0:98            name=name[:pos]99    if not args.partial_resolve and name not in mapping:100        print("Problem with ", name, file=sys.stderr)101    assert args.partial_resolve or name in mapping102    if usage[name] > 0:103        print(name, "used multiple times", file=sys.stderr)104    usage[name] += 1105    if name not in mapping and args.partial_resolve:106        resolved.append(name + n_o[-1])107        return108    parts = mapping[name]109    if need_swap(n_o):110        for i in range(len(parts),0,-1):111            p = parts[i - 1]112            resolve(swap_sign(p), resolved)113    else:114        for p in parts:115            resolve(p, resolved)116print("Resolving segment composition", file=sys.stderr)117for s in names:118    resolved = []119    resolve(s + '+', resolved)120    if args.gaf_paths:121        print(s, ''.join([transform_to_gaf(s) for s in resolved]))122    else:123        print(s, ','.join(resolved))...

commands.py

Source:commands.py

...15_get_init_logger = functools.partial(get_logger, "init")16def run(args: Namespace) -> int:17    enable_console_timestamp()18    builder = RunbookBuilder.from_path(args.runbook, args.variables)19    notifier_data = builder.partial_resolve(constants.NOTIFIER)20    if notifier_data:21        notifier_runbook = schema.load_by_type_many(schema.Notifier, notifier_data)22        notifier.initialize(runbooks=notifier_runbook)23    run_message = messages.TestRunMessage(24        runbook_name=builder.partial_resolve(constants.NAME),25        test_project=builder.partial_resolve(constants.TEST_PROJECT),26        test_pass=builder.partial_resolve(constants.TEST_PASS),27        run_name=constants.RUN_NAME,28        tags=builder.partial_resolve(constants.TAGS),29    )30    notifier.notify(run_message)31    run_status = messages.TestRunStatus.FAILED32    run_timer = create_timer()33    run_error_message = ""34    try:35        runner = RootRunner(runbook_builder=builder)36        asyncio.run(runner.start())37        run_status = messages.TestRunStatus.SUCCESS38    except Exception as identifier:39        run_error_message = str(identifier)40        raise identifier41    finally:42        run_message.status = run_status43        run_message.elapsed = run_timer.elapsed()44        run_message.message = run_error_message45        notifier.notify(run_message)46        notifier.finalize()47        run_finalize()48    return runner.exit_code49def run_finalize() -> None:50    try:51        plugin_manager.hook.on_run_finalize()52    except Exception as exception:53        log = _get_init_logger("run_finalize")54        log.info(f"run_finalize failed with error {exception}")55# check runbook56def check(args: Namespace) -> int:57    RunbookBuilder.from_path(args.runbook, args.variables)58    return 059def list_start(args: Namespace) -> int:60    builder = RunbookBuilder.from_path(args.runbook, args.variables)61    list_all = cast(Optional[bool], args.list_all)62    log = _get_init_logger("list")63    if args.type == constants.LIST_CASE:64        if list_all:65            cases: Iterable[TestCaseRuntimeData] = select_testcases()66        else:67            cases = select_testcases(builder.partial_resolve(constants.TESTCASE))68        for case_data in cases:69            log.info(70                f"case: {case_data.name}, suite: {case_data.metadata.suite.name}, "71                f"area: {case_data.suite.area}, "72                f"category: {case_data.suite.category}, "73                f"tags: {','.join(case_data.suite.tags)}, "74                f"priority: {case_data.priority}"75            )76    else:77        raise LisaException(f"unknown list type '{args.type}'")78    log.info("list information here")79    return 080class CommandHookSpec:81    @hookspec...

plot.py

Source:plot.py

1#!/usr/bin/python32import numpy as np3import matplotlib.pyplot as plt4resolve = np.genfromtxt('resolve', delimiter=',', names=['size', 'time'])5plt.plot(resolve['size'], resolve['time'], label='Execution time for resolve_indirect_jumps on synthetic BIR programs')6plt.xlabel('Program size (middle blocks)')7plt.ylabel('Time (seconds)')8plt.title('Experiment 1')9plt.legend()10plt.savefig('resolve.png')11plt.figure()12partial_resolve = np.genfromtxt('partial_resolve', delimiter=',', names=['size', 'time'])13plt.plot(partial_resolve['size'], partial_resolve['time'], label='Execution time for resolve_indirect_jumps on synthetic BIR programs')14plt.xlabel('Program size (middle blocks)')15plt.ylabel('Time (seconds)')16plt.title('Experiment 2')17plt.legend()18plt.savefig('partial_resolve.png')19plt.figure()20constant_resolve = np.genfromtxt('constant_resolve', delimiter=',', names=['size', 'time'])21plt.plot(constant_resolve['size'], constant_resolve['time'], label='Execution time for resolve_indirect_jumps on synthetic BIR programs')22plt.xlabel('Program size (middle blocks)')23plt.ylabel('Time (seconds)')24plt.title('Experiment 3')25plt.legend()26plt.savefig('constant_resolve.png')27plt.figure()28transfer = np.genfromtxt('transfer', delimiter=',', names=['size', 'time'])29plt.plot(transfer['size'], transfer['time'], label='Execution time for transfer_contract on synthetic BIR programs')30plt.xlabel('Program size (middle blocks)')31plt.ylabel('Time (seconds)')32plt.title('Experiment 4')33plt.legend()34plt.savefig('transfer.png')...

Automation Testing Tutorials

Learn to execute automation testing from scratch with LambdaTest Learning Hub. Right from setting up the prerequisites to run your first automation test, to following best practices and diving deeper into advanced test scenarios. LambdaTest Learning Hubs compile a list of step-by-step guides to help you be proficient with different test automation frameworks i.e. Selenium, Cypress, TestNG etc.