How to use setup_system method in lisa

Best Python code snippet using lisa_python

package.py

Source:package.py Github

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1from os import system2from linux_profile.base.system import System3class HandlerPackage(System):4 def setup_system(5 self,6 sudo: bool = True,7 parameter: list = list()):8 sudo = "sudo" if sudo else ""9 parameter = " ".join(parameter)10 command = [sudo, self.type, self.command, self.name, parameter]11 system(" ".join(command).replace(" ", " "))12 def setup_apt_get(self):13 if self.command == 'install':14 self.setup_system(parameter=["-y"])15 if self.command == 'uninstall':16 self.command = 'remove'17 self.setup_system(parameter=["-y"])18 def setup_apt(self):19 if self.command == 'install':20 self.setup_system(parameter=["-y"])21 if self.command == 'uninstall':22 self.command = 'remove'23 self.setup_system(parameter=["-y"])24 def setup_snap(self):25 if self.command == 'uninstall':26 self.command = 'remove'27 self.setup_system()28 def setup_yum(self):29 if self.command == 'uninstall':30 self.command = 'remove'31 self.setup_system()32 def setup_dnf(self):33 if self.command == 'uninstall':34 self.command = 'remove'35 self.setup_system()36 def setup_pacman(self):37 if self.command == 'install':38 self.command = '-S'39 if self.command == 'uninstall':40 self.command = '-R'41 self.setup_system()42 def setup_zypper(self):43 if self.command == 'uninstall':44 self.command = 'rm'45 self.setup_system()46 def setup_spack(self):47 self.setup_system()48 def setup_brew(self):49 if self.command == 'uninstall':50 self.command = 'remove'51 self.setup_system()52 def setup_pip(self):53 if self.command == 'install':54 self.setup_system(sudo=False)55 if self.command == 'uninstall':56 self.setup_system(sudo=False, parameter=[" -y"])57 def setup_deb(self):58 path_file = f"{self.temp}/{self.file}"59 system(f"curl {self.url} --output {path_file}")60 system(f"sudo dpkg -i {path_file}")61 system("sudo apt install -f")62 # Removing the temporary installation file63 system(f"sudo rm -r {path_file}")64 def setup_shell(self):65 path_file = f"{self.temp}/{self.name}"66 system(f"curl {self.url} --output {path_file}")67 system(f"chmod +x {path_file}")68 system(path_file)69 # Removing the temporary installation file70 system(f"sudo rm -r {path_file}")

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test_get_kstoc.py

Source:test_get_kstoc.py Github

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1"""2 Tests for kstoc function3"""4import numpy as np5import pytest6from cayenne.utils import Na, get_kstoc7from cayenne.simulation import Simulation8@pytest.mark.usefixtures("setup_system")9class TestKstoc:10 """11 Test the output of `get_kstoc`.12 """13 def test_100(self, setup_system):14 """ A -> ..."""15 k_det, volume = setup_system16 V_r = np.array([[1], [0], [0]])17 k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)18 assert k_stoc == k_det19 def test_110(self, setup_system):20 """ A + B -> ..."""21 k_det, volume = setup_system22 V_r = np.array([[1], [1], [0]])23 k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)24 assert np.isclose(k_stoc, k_det / (Na * volume))25 def test_111(self, setup_system):26 """ A + B + C -> ..."""27 k_det, volume = setup_system28 V_r = np.array([[1], [1], [1]])29 k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)30 assert np.isclose(k_stoc, k_det / (Na * volume) ** 2)31 def test_200(self, setup_system):32 """ A + A -> ..."""33 k_det, volume = setup_system34 V_r = np.array([[2], [0], [0]])35 k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)36 assert np.isclose(k_stoc, k_det * 2 / (Na * volume))37 def test_210(self, setup_system):38 """ A + A + B -> ..."""39 k_det, volume = setup_system40 V_r = np.array([[2], [1], [0]])41 k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)42 assert np.isclose(k_stoc, k_det * 2 / (Na * volume) ** 2)43 def test_300(self, setup_system):44 """ A + A + A -> ..."""45 k_det, volume = setup_system46 V_r = np.array([[3], [0], [0]])47 k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)48 assert np.isclose(k_stoc, k_det * 6 / (Na * volume) ** 2)49 def test_chemflag(self, setup_system):50 """ Chemical and non-chemical system """51 k_det, volume = setup_system52 V_r = np.array([[3], [0], [0]])53 k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)54 assert np.isclose(k_stoc, k_det * 6 / (Na * volume) ** 2)55 k_det, volume = setup_system56 V_r = np.array([[3], [0], [0]])57 k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=False)...

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script.py

Source:script.py Github

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1from os import system2from linux_profile.base.system import System3from linux_profile.utils.file import write_file4class HandlerScript(System):5 def setup_system(self, shebang: str):6 path_file = f"{self.temp}/{self.name}"7 for index, line in enumerate(self.body):8 if index == 0:9 system(f"echo '{shebang}' > {path_file}")10 write_file(11 content=line + '\n',12 path_file=path_file,13 mode='a'14 )15 system(f"chmod +x {path_file}")16 system(path_file)17 def setup_shell(self):18 shebang = self.shebang if self.shebang else '#!/bin/bash'19 self.setup_system(shebang=shebang)20 def setup_python(self):21 shebang = self.shebang if self.shebang else '#!/usr/bin/env python'22 self.setup_system(shebang=shebang)23 def setup_python3(self):24 shebang = self.shebang if self.shebang else '#!/usr/bin/env python3'25 self.setup_system(shebang=shebang)26 def setup_ruby(self):27 shebang = self.shebang if self.shebang else '#!/usr/bin/env ruby'...

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