How to use print_config_json method in localstack

Best Python code snippet using localstack_python

search_organisms.py

Source:search_organisms.py Github

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...549 parameters_path = RESULT_BASE_PATH_DIR + "parameters.txt"550 print_ln("-" * 50, parameters_path)551 print_ln(" " * 20 + "PARAMETERS", parameters_path)552 print_ln("-" * 50, parameters_path)553 print_config_json(config["main"], "Main Config", parameters_path)554 print_config_json(configOrganism, "Organism Config", parameters_path)555 print_config_json(556 configOrganismFactory, "Organism Factory Config", parameters_path557 )558 print_config_json(configConnector, "Connector Config", parameters_path)559 print_config_json(configPssm, "PSSM Config", parameters_path)560 print_ln("-" * 50, parameters_path)561def read_fasta_file(filename: str) -> list:562 """Reads a fasta file and returns an array of DNA sequences (strings)563 TODO: probably it can be useful to create our own Sequence object that564 creates the string and stores some properties from fasta format. Also565 we can adapt the current program to use Biopythons's Seq object.566 Args:567 filename: Name of the file that contains FASTA format sequences to read568 Returns:569 The set of sequences in string format570 """571 dataset = []572 fasta_sequences = SeqIO.parse(open(filename), "fasta")573 for fasta in fasta_sequences:574 dataset.append(str(fasta.seq).lower())575 return dataset576def read_json_file(filename: str) -> dict:577 """Reads a JSON file and returns a dictionary with the content578 Args:579 filename: Name of the json file to read580 Returns:581 Dictionary with the json file info582 """583 with open(filename) as json_content:584 return json.load(json_content)585def print_config_json(config: dict, name: str, path: str) -> None:586 """Print the config file on std out and send it to a file.587 It is useful so we can know which was the configuration on every run588 Args:589 config: Configuration file to print590 name: Title for the configuration file591 path: File to export the configuration info592 """593 print_ln("{}:".format(name), path)594 for key in config.keys():595 print_ln("{}: {}".format(key, config[key]), path)596 print_ln("\n", path)597def print_ln(string: str, name_file: str) -> None:598 """Shows the string on stdout and write it to a file599 (like the python's logging modules does)...

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opts.py

Source:opts.py Github

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1"""Command line options."""2import argparse3import sys4import toml5import json6import os7default_config_toml = ""8with open(os.path.join(os.path.dirname(__file__), 'config.toml'), 'r') as f:9 default_config_toml = f.read()10class Opts:11 """Parse command line options."""12 def __init__(self):13 """Parse and initialize the options."""14 parser = argparse.ArgumentParser(description='Management tool for '15 'DragonMint/Innosilicon miners.',16 formatter_class=argparse.17 ArgumentDefaultsHelpFormatter)18 parser.add_argument('-c', '--config', type=str,19 help='Path to config file in either TOML or JSON format.',20 default="config.toml")21 parser.add_argument('--print-config-toml', action='store_true',22 help="Print default config in TOML and exit")23 parser.add_argument('--print-config-json', action='store_true',24 help="Print default config in JSON and exit")25 self.args = parser.parse_args()26 if self.args.print_config_toml:27 print(default_config_toml)28 sys.exit(0)29 if self.args.print_config_json:30 print(json.dumps(toml.loads(default_config_toml),31 sort_keys=True, indent=2))...

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