Test your AI Agents with the all-new Agent to Agent Testing Platform.Learn More

How to use chomp method in molecule

Best Python code snippet using molecule_python

chomp.py

Source:chomp.py

...10"""11from __future__ import print_function12import re13_have_chomp = {}14def have_chomp(program='homsimpl'):15    """16    Return True if this computer has ``program`` installed.17    The first time it is run, this function caches its result in the18    variable ``_have_chomp`` -- a dictionary indexed by program name19    -- and any subsequent time, it just checks the value of the20    variable.21    This program is used in the routine CHomP.__call__.22    If this computer doesn't have CHomP installed, you may obtain it23    from http://chomp.rutgers.edu/.24    EXAMPLES::25        sage: from sage.interfaces.chomp import have_chomp26        sage: have_chomp() # random -- depends on whether CHomP is installed27        True28        sage: 'homsimpl' in sage.interfaces.chomp._have_chomp29        True30        sage: sage.interfaces.chomp._have_chomp['homsimpl'] == have_chomp()31        True32    """33    global _have_chomp34    if program not in _have_chomp:35        from sage.misc.sage_ostools import have_program36        _have_chomp[program] = have_program(program)37    return _have_chomp[program]38class CHomP:39    r"""40    Interface to the CHomP package.41    :param program: which CHomP program to use42    :type program: string43    :param complex: a simplicial or cubical complex44    :param subcomplex: a subcomplex of ``complex`` or None (the default)45    :param base_ring: ring over which to perform computations -- must be `\ZZ` or `\GF{p}`.46    :type base_ring: ring; optional, default `\ZZ`47    :param generators: if True, also return list of generators48    :type generators: boolean; optional, default False49    :param verbose: if True, print helpful messages as the computation50       progresses51    :type verbose: boolean; optional, default False52    :param extra_opts: options passed directly to ``program``53    :type extra_opts: string54    :return: homology groups as a dictionary indexed by dimension55    The programs ``homsimpl``, ``homcubes``, and ``homchain`` are56    available through this interface.  ``homsimpl`` computes the57    relative or absolute homology groups of simplicial complexes.58    ``homcubes`` computes the relative or absolute homology groups of59    cubical complexes.  ``homchain`` computes the homology groups of60    chain complexes.  For consistency with Sage's other homology61    computations, the answers produced by ``homsimpl`` and62    ``homcubes`` in the absolute case are converted to reduced63    homology.64    Note also that CHomP can only compute over the integers or65    `\GF{p}`.  CHomP is fast enough, though, that if you want66    rational information, you should consider using CHomP with integer67    coefficients, or with mod `p` coefficients for a sufficiently68    large `p`, rather than using Sage's built-in homology algorithms.69    See also the documentation for the functions :func:`homchain`,70    :func:`homcubes`, and :func:`homsimpl` for more examples,71    including illustrations of some of the optional parameters.72    EXAMPLES::73        sage: from sage.interfaces.chomp import CHomP74        sage: T = cubical_complexes.Torus()75        sage: CHomP()('homcubes', T) # optional - CHomP76        {0: 0, 1: Z x Z, 2: Z}77    Relative homology of a segment relative to its endpoints::78        sage: edge = simplicial_complexes.Simplex(1)79        sage: ends = edge.n_skeleton(0)80        sage: CHomP()('homsimpl', edge)  # optional - CHomP81        {0: 0}82        sage: CHomP()('homsimpl', edge, ends)  # optional - CHomP83        {0: 0, 1: Z}84    Homology of a chain complex::85        sage: C = ChainComplex({3: 2 * identity_matrix(ZZ, 2)}, degree=-1)86        sage: CHomP()('homchain', C)  # optional - CHomP87        {2: C2 x C2}88    """89    def __repr__(self):90        """91        String representation.92        EXAMPLES::93            sage: from sage.interfaces.chomp import CHomP94            sage: CHomP()           # indirect doctest95            CHomP interface96        """97        return "CHomP interface"98    def __call__(self, program, complex, subcomplex=None, **kwds):99        """100        Call a CHomP program to compute the homology of a chain101        complex, simplicial complex, or cubical complex.102        See :class:`CHomP` for full documentation.103        EXAMPLES::104            sage: from sage.interfaces.chomp import CHomP105            sage: T = cubical_complexes.Torus()106            sage: CHomP()('homcubes', T) # indirect doctest, optional - CHomP107            {0: 0, 1: Z x Z, 2: Z}108        """109        from sage.misc.temporary_file import tmp_filename110        from sage.homology.all import CubicalComplex, cubical_complexes111        from sage.homology.all import SimplicialComplex, Simplex112        from sage.homology.chain_complex import HomologyGroup113        from subprocess import Popen, PIPE114        from sage.rings.all import QQ, ZZ115        from sage.modules.all import VectorSpace, vector116        from sage.combinat.free_module import CombinatorialFreeModule117        if not have_chomp(program):118            raise OSError("Program %s not found" % program)119        verbose = kwds.get('verbose', False)120        generators = kwds.get('generators', False)121        extra_opts = kwds.get('extra_opts', '')122        base_ring = kwds.get('base_ring', ZZ)123        if extra_opts:124            extra_opts = extra_opts.split()125        else:126            extra_opts = []127        # type of complex:128        cubical = False129        simplicial = False130        chain = False131        # CHomP seems to have problems with cubical complexes if the...

Chomp_GameListener.py

Source:Chomp_GameListener.py

1# Generated from Chomp_Game.g4 by ANTLR 4.7.12from antlr4 import *3if __name__ is not None and "." in __name__:4    from .Chomp_GameParser import Chomp_GameParser5else:6    from Chomp_GameParser import Chomp_GameParser7# This class defines a complete listener for a parse tree produced by Chomp_GameParser.8class Chomp_GameListener(ParseTreeListener):9    # Enter a parse tree produced by Chomp_GameParser#domain.10    def enterDomain(self, ctx:Chomp_GameParser.DomainContext):11        pass12    # Exit a parse tree produced by Chomp_GameParser#domain.13    def exitDomain(self, ctx:Chomp_GameParser.DomainContext):14        pass15    # Enter a parse tree produced by Chomp_GameParser#objectDefine.16    def enterObjectDefine(self, ctx:Chomp_GameParser.ObjectDefineContext):17        pass18    # Exit a parse tree produced by Chomp_GameParser#objectDefine.19    def exitObjectDefine(self, ctx:Chomp_GameParser.ObjectDefineContext):20        pass21    # Enter a parse tree produced by Chomp_GameParser#numericDefine.22    def enterNumericDefine(self, ctx:Chomp_GameParser.NumericDefineContext):23        pass24    # Exit a parse tree produced by Chomp_GameParser#numericDefine.25    def exitNumericDefine(self, ctx:Chomp_GameParser.NumericDefineContext):26        pass27    # Enter a parse tree produced by Chomp_GameParser#numericSymbol.28    def enterNumericSymbol(self, ctx:Chomp_GameParser.NumericSymbolContext):29        pass30    # Exit a parse tree produced by Chomp_GameParser#numericSymbol.31    def exitNumericSymbol(self, ctx:Chomp_GameParser.NumericSymbolContext):32        pass33    # Enter a parse tree produced by Chomp_GameParser#typeDefine.34    def enterTypeDefine(self, ctx:Chomp_GameParser.TypeDefineContext):35        pass36    # Exit a parse tree produced by Chomp_GameParser#typeDefine.37    def exitTypeDefine(self, ctx:Chomp_GameParser.TypeDefineContext):38        pass39    # Enter a parse tree produced by Chomp_GameParser#terconditionDefine.40    def enterTerconditionDefine(self, ctx:Chomp_GameParser.TerconditionDefineContext):41        pass42    # Exit a parse tree produced by Chomp_GameParser#terconditionDefine.43    def exitTerconditionDefine(self, ctx:Chomp_GameParser.TerconditionDefineContext):44        pass45    # Enter a parse tree produced by Chomp_GameParser#predicateDefine.46    def enterPredicateDefine(self, ctx:Chomp_GameParser.PredicateDefineContext):47        pass48    # Exit a parse tree produced by Chomp_GameParser#predicateDefine.49    def exitPredicateDefine(self, ctx:Chomp_GameParser.PredicateDefineContext):50        pass51    # Enter a parse tree produced by Chomp_GameParser#atomFormSkeleton.52    def enterAtomFormSkeleton(self, ctx:Chomp_GameParser.AtomFormSkeletonContext):53        pass54    # Exit a parse tree produced by Chomp_GameParser#atomFormSkeleton.55    def exitAtomFormSkeleton(self, ctx:Chomp_GameParser.AtomFormSkeletonContext):56        pass57    # Enter a parse tree produced by Chomp_GameParser#predicate.58    def enterPredicate(self, ctx:Chomp_GameParser.PredicateContext):59        pass60    # Exit a parse tree produced by Chomp_GameParser#predicate.61    def exitPredicate(self, ctx:Chomp_GameParser.PredicateContext):62        pass63    # Enter a parse tree produced by Chomp_GameParser#typeDeclaration.64    def enterTypeDeclaration(self, ctx:Chomp_GameParser.TypeDeclarationContext):65        pass66    # Exit a parse tree produced by Chomp_GameParser#typeDeclaration.67    def exitTypeDeclaration(self, ctx:Chomp_GameParser.TypeDeclarationContext):68        pass69    # Enter a parse tree produced by Chomp_GameParser#type.70    def enterType(self, ctx:Chomp_GameParser.TypeContext):71        pass72    # Exit a parse tree produced by Chomp_GameParser#type.73    def exitType(self, ctx:Chomp_GameParser.TypeContext):74        pass75    # Enter a parse tree produced by Chomp_GameParser#actionDefine.76    def enterActionDefine(self, ctx:Chomp_GameParser.ActionDefineContext):77        pass78    # Exit a parse tree produced by Chomp_GameParser#actionDefine.79    def exitActionDefine(self, ctx:Chomp_GameParser.ActionDefineContext):80        pass81    # Enter a parse tree produced by Chomp_GameParser#actionSymbol.82    def enterActionSymbol(self, ctx:Chomp_GameParser.ActionSymbolContext):83        pass84    # Exit a parse tree produced by Chomp_GameParser#actionSymbol.85    def exitActionSymbol(self, ctx:Chomp_GameParser.ActionSymbolContext):86        pass87    # Enter a parse tree produced by Chomp_GameParser#emptyOrPreGD.88    def enterEmptyOrPreGD(self, ctx:Chomp_GameParser.EmptyOrPreGDContext):89        pass90    # Exit a parse tree produced by Chomp_GameParser#emptyOrPreGD.91    def exitEmptyOrPreGD(self, ctx:Chomp_GameParser.EmptyOrPreGDContext):92        pass93    # Enter a parse tree produced by Chomp_GameParser#emptyOrEffect.94    def enterEmptyOrEffect(self, ctx:Chomp_GameParser.EmptyOrEffectContext):95        pass96    # Exit a parse tree produced by Chomp_GameParser#emptyOrEffect.97    def exitEmptyOrEffect(self, ctx:Chomp_GameParser.EmptyOrEffectContext):98        pass99    # Enter a parse tree produced by Chomp_GameParser#listName.100    def enterListName(self, ctx:Chomp_GameParser.ListNameContext):101        pass102    # Exit a parse tree produced by Chomp_GameParser#listName.103    def exitListName(self, ctx:Chomp_GameParser.ListNameContext):104        pass105    # Enter a parse tree produced by Chomp_GameParser#listVariable.106    def enterListVariable(self, ctx:Chomp_GameParser.ListVariableContext):107        pass108    # Exit a parse tree produced by Chomp_GameParser#listVariable.109    def exitListVariable(self, ctx:Chomp_GameParser.ListVariableContext):110        pass111    # Enter a parse tree produced by Chomp_GameParser#oneofDefine.112    def enterOneofDefine(self, ctx:Chomp_GameParser.OneofDefineContext):113        pass114    # Exit a parse tree produced by Chomp_GameParser#oneofDefine.115    def exitOneofDefine(self, ctx:Chomp_GameParser.OneofDefineContext):116        pass117    # Enter a parse tree produced by Chomp_GameParser#gd.118    def enterGd(self, ctx:Chomp_GameParser.GdContext):119        pass120    # Exit a parse tree produced by Chomp_GameParser#gd.121    def exitGd(self, ctx:Chomp_GameParser.GdContext):122        pass123    # Enter a parse tree produced by Chomp_GameParser#termAtomForm.124    def enterTermAtomForm(self, ctx:Chomp_GameParser.TermAtomFormContext):125        pass126    # Exit a parse tree produced by Chomp_GameParser#termAtomForm.127    def exitTermAtomForm(self, ctx:Chomp_GameParser.TermAtomFormContext):128        pass129    # Enter a parse tree produced by Chomp_GameParser#termLiteral.130    def enterTermLiteral(self, ctx:Chomp_GameParser.TermLiteralContext):131        pass132    # Exit a parse tree produced by Chomp_GameParser#termLiteral.133    def exitTermLiteral(self, ctx:Chomp_GameParser.TermLiteralContext):134        pass135    # Enter a parse tree produced by Chomp_GameParser#constTerm.136    def enterConstTerm(self, ctx:Chomp_GameParser.ConstTermContext):137        pass138    # Exit a parse tree produced by Chomp_GameParser#constTerm.139    def exitConstTerm(self, ctx:Chomp_GameParser.ConstTermContext):140        pass141    # Enter a parse tree produced by Chomp_GameParser#term.142    def enterTerm(self, ctx:Chomp_GameParser.TermContext):143        pass144    # Exit a parse tree produced by Chomp_GameParser#term.145    def exitTerm(self, ctx:Chomp_GameParser.TermContext):146        pass147    # Enter a parse tree produced by Chomp_GameParser#effect.148    def enterEffect(self, ctx:Chomp_GameParser.EffectContext):149        pass150    # Exit a parse tree produced by Chomp_GameParser#effect.151    def exitEffect(self, ctx:Chomp_GameParser.EffectContext):152        pass153    # Enter a parse tree produced by Chomp_GameParser#assignop.154    def enterAssignop(self, ctx:Chomp_GameParser.AssignopContext):155        pass156    # Exit a parse tree produced by Chomp_GameParser#assignop.157    def exitAssignop(self, ctx:Chomp_GameParser.AssignopContext):158        pass159    # Enter a parse tree produced by Chomp_GameParser#pEffect.160    def enterPEffect(self, ctx:Chomp_GameParser.PEffectContext):161        pass162    # Exit a parse tree produced by Chomp_GameParser#pEffect.163    def exitPEffect(self, ctx:Chomp_GameParser.PEffectContext):164        pass165    # Enter a parse tree produced by Chomp_GameParser#problemName.166    def enterProblemName(self, ctx:Chomp_GameParser.ProblemNameContext):167        pass168    # Exit a parse tree produced by Chomp_GameParser#problemName.169    def exitProblemName(self, ctx:Chomp_GameParser.ProblemNameContext):170        pass171    # Enter a parse tree produced by Chomp_GameParser#domainName.172    def enterDomainName(self, ctx:Chomp_GameParser.DomainNameContext):173        pass174    # Exit a parse tree produced by Chomp_GameParser#domainName.175    def exitDomainName(self, ctx:Chomp_GameParser.DomainNameContext):176        pass177    # Enter a parse tree produced by Chomp_GameParser#agentDefine.178    def enterAgentDefine(self, ctx:Chomp_GameParser.AgentDefineContext):179        pass180    # Exit a parse tree produced by Chomp_GameParser#agentDefine.181    def exitAgentDefine(self, ctx:Chomp_GameParser.AgentDefineContext):182        pass183    # Enter a parse tree produced by Chomp_GameParser#objectDeclaration.184    def enterObjectDeclaration(self, ctx:Chomp_GameParser.ObjectDeclarationContext):185        pass186    # Exit a parse tree produced by Chomp_GameParser#objectDeclaration.187    def exitObjectDeclaration(self, ctx:Chomp_GameParser.ObjectDeclarationContext):188        pass189    # Enter a parse tree produced by Chomp_GameParser#numericSetting.190    def enterNumericSetting(self, ctx:Chomp_GameParser.NumericSettingContext):191        pass192    # Exit a parse tree produced by Chomp_GameParser#numericSetting.193    def exitNumericSetting(self, ctx:Chomp_GameParser.NumericSettingContext):194        pass195    # Enter a parse tree produced by Chomp_GameParser#init.196    def enterInit(self, ctx:Chomp_GameParser.InitContext):197        pass198    # Exit a parse tree produced by Chomp_GameParser#init.199    def exitInit(self, ctx:Chomp_GameParser.InitContext):200        pass201    # Enter a parse tree produced by Chomp_GameParser#constTermAtomForm.202    def enterConstTermAtomForm(self, ctx:Chomp_GameParser.ConstTermAtomFormContext):203        pass204    # Exit a parse tree produced by Chomp_GameParser#constTermAtomForm.205    def exitConstTermAtomForm(self, ctx:Chomp_GameParser.ConstTermAtomFormContext):...

Chomp_GameVisitor.py

Source:Chomp_GameVisitor.py

1# Generated from Chomp_Game.g4 by ANTLR 4.7.12from antlr4 import *3if __name__ is not None and "." in __name__:4    from .Chomp_GameParser import Chomp_GameParser5else:6    from Chomp_GameParser import Chomp_GameParser7# This class defines a complete generic visitor for a parse tree produced by Chomp_GameParser.8class Chomp_GameVisitor(ParseTreeVisitor):9    # Visit a parse tree produced by Chomp_GameParser#domain.10    def visitDomain(self, ctx:Chomp_GameParser.DomainContext):11        return self.visitChildren(ctx)12    # Visit a parse tree produced by Chomp_GameParser#objectDefine.13    def visitObjectDefine(self, ctx:Chomp_GameParser.ObjectDefineContext):14        return self.visitChildren(ctx)15    # Visit a parse tree produced by Chomp_GameParser#numericDefine.16    def visitNumericDefine(self, ctx:Chomp_GameParser.NumericDefineContext):17        return self.visitChildren(ctx)18    # Visit a parse tree produced by Chomp_GameParser#numericSymbol.19    def visitNumericSymbol(self, ctx:Chomp_GameParser.NumericSymbolContext):20        return self.visitChildren(ctx)21    # Visit a parse tree produced by Chomp_GameParser#typeDefine.22    def visitTypeDefine(self, ctx:Chomp_GameParser.TypeDefineContext):23        return self.visitChildren(ctx)24    # Visit a parse tree produced by Chomp_GameParser#terconditionDefine.25    def visitTerconditionDefine(self, ctx:Chomp_GameParser.TerconditionDefineContext):26        return self.visitChildren(ctx)27    # Visit a parse tree produced by Chomp_GameParser#predicateDefine.28    def visitPredicateDefine(self, ctx:Chomp_GameParser.PredicateDefineContext):29        return self.visitChildren(ctx)30    # Visit a parse tree produced by Chomp_GameParser#atomFormSkeleton.31    def visitAtomFormSkeleton(self, ctx:Chomp_GameParser.AtomFormSkeletonContext):32        return self.visitChildren(ctx)33    # Visit a parse tree produced by Chomp_GameParser#predicate.34    def visitPredicate(self, ctx:Chomp_GameParser.PredicateContext):35        return self.visitChildren(ctx)36    # Visit a parse tree produced by Chomp_GameParser#typeDeclaration.37    def visitTypeDeclaration(self, ctx:Chomp_GameParser.TypeDeclarationContext):38        return self.visitChildren(ctx)39    # Visit a parse tree produced by Chomp_GameParser#type.40    def visitType(self, ctx:Chomp_GameParser.TypeContext):41        return self.visitChildren(ctx)42    # Visit a parse tree produced by Chomp_GameParser#actionDefine.43    def visitActionDefine(self, ctx:Chomp_GameParser.ActionDefineContext):44        return self.visitChildren(ctx)45    # Visit a parse tree produced by Chomp_GameParser#actionSymbol.46    def visitActionSymbol(self, ctx:Chomp_GameParser.ActionSymbolContext):47        return self.visitChildren(ctx)48    # Visit a parse tree produced by Chomp_GameParser#emptyOrPreGD.49    def visitEmptyOrPreGD(self, ctx:Chomp_GameParser.EmptyOrPreGDContext):50        return self.visitChildren(ctx)51    # Visit a parse tree produced by Chomp_GameParser#emptyOrEffect.52    def visitEmptyOrEffect(self, ctx:Chomp_GameParser.EmptyOrEffectContext):53        return self.visitChildren(ctx)54    # Visit a parse tree produced by Chomp_GameParser#listName.55    def visitListName(self, ctx:Chomp_GameParser.ListNameContext):56        return self.visitChildren(ctx)57    # Visit a parse tree produced by Chomp_GameParser#listVariable.58    def visitListVariable(self, ctx:Chomp_GameParser.ListVariableContext):59        return self.visitChildren(ctx)60    # Visit a parse tree produced by Chomp_GameParser#oneofDefine.61    def visitOneofDefine(self, ctx:Chomp_GameParser.OneofDefineContext):62        return self.visitChildren(ctx)63    # Visit a parse tree produced by Chomp_GameParser#gd.64    def visitGd(self, ctx:Chomp_GameParser.GdContext):65        return self.visitChildren(ctx)66    # Visit a parse tree produced by Chomp_GameParser#termAtomForm.67    def visitTermAtomForm(self, ctx:Chomp_GameParser.TermAtomFormContext):68        return self.visitChildren(ctx)69    # Visit a parse tree produced by Chomp_GameParser#termLiteral.70    def visitTermLiteral(self, ctx:Chomp_GameParser.TermLiteralContext):71        return self.visitChildren(ctx)72    # Visit a parse tree produced by Chomp_GameParser#constTerm.73    def visitConstTerm(self, ctx:Chomp_GameParser.ConstTermContext):74        return self.visitChildren(ctx)75    # Visit a parse tree produced by Chomp_GameParser#term.76    def visitTerm(self, ctx:Chomp_GameParser.TermContext):77        return self.visitChildren(ctx)78    # Visit a parse tree produced by Chomp_GameParser#effect.79    def visitEffect(self, ctx:Chomp_GameParser.EffectContext):80        return self.visitChildren(ctx)81    # Visit a parse tree produced by Chomp_GameParser#assignop.82    def visitAssignop(self, ctx:Chomp_GameParser.AssignopContext):83        return self.visitChildren(ctx)84    # Visit a parse tree produced by Chomp_GameParser#pEffect.85    def visitPEffect(self, ctx:Chomp_GameParser.PEffectContext):86        return self.visitChildren(ctx)87    # Visit a parse tree produced by Chomp_GameParser#problemName.88    def visitProblemName(self, ctx:Chomp_GameParser.ProblemNameContext):89        return self.visitChildren(ctx)90    # Visit a parse tree produced by Chomp_GameParser#domainName.91    def visitDomainName(self, ctx:Chomp_GameParser.DomainNameContext):92        return self.visitChildren(ctx)93    # Visit a parse tree produced by Chomp_GameParser#agentDefine.94    def visitAgentDefine(self, ctx:Chomp_GameParser.AgentDefineContext):95        return self.visitChildren(ctx)96    # Visit a parse tree produced by Chomp_GameParser#objectDeclaration.97    def visitObjectDeclaration(self, ctx:Chomp_GameParser.ObjectDeclarationContext):98        return self.visitChildren(ctx)99    # Visit a parse tree produced by Chomp_GameParser#numericSetting.100    def visitNumericSetting(self, ctx:Chomp_GameParser.NumericSettingContext):101        return self.visitChildren(ctx)102    # Visit a parse tree produced by Chomp_GameParser#init.103    def visitInit(self, ctx:Chomp_GameParser.InitContext):104        return self.visitChildren(ctx)105    # Visit a parse tree produced by Chomp_GameParser#constTermAtomForm.106    def visitConstTermAtomForm(self, ctx:Chomp_GameParser.ConstTermAtomFormContext):107        return self.visitChildren(ctx)...

Automation Testing Tutorials

Learn to execute automation testing from scratch with LambdaTest Learning Hub. Right from setting up the prerequisites to run your first automation test, to following best practices and diving deeper into advanced test scenarios. LambdaTest Learning Hubs compile a list of step-by-step guides to help you be proficient with different test automation frameworks i.e. Selenium, Cypress, TestNG etc.