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How to use temp_dir method in molecule

Best Python code snippet using molecule_python

zip_package_test.py

Source:zip_package_test.py

...232    self.assertEqual(tempfile.gettempdir(), os.path.dirname(actual))233    basename = os.path.basename(actual)234    self.assertTrue(basename.startswith('.zip_pkg-'), actual)235    self.assertTrue(basename.endswith('-cert.pem'), actual)236  def test_extract_resource_temp_dir(self):237    pkg = zip_package.ZipPackage(self.temp_dir)238    pkg.add_directory(os.path.join(ROOT_DIR, 'utils'), 'utils')239    pkg.add_buffer('cert.pem', 'Certificate\n')240    pkg.add_buffer('__main__.py', '\n'.join([241      'import sys',242      'from utils import zip_package',243      'print zip_package.extract_resource(',244      '  sys.modules[__name__], \'cert.pem\', %r)' % self.temp_dir,245    ]))246    zip_file = os.path.join(self.temp_dir, 'out.zip')247    pkg.zip_into_file(zip_file)248    actual = check_output([sys.executable, zip_file]).strip()249    expected = os.path.join(250        self.temp_dir,...

zarr_test.py

Source:zarr_test.py

1# Copyright 2021 Google LLC2#3# Licensed under the Apache License, Version 2.0 (the "License");4# you may not use this file except in compliance with the License.5# You may obtain a copy of the License at6#7#     https://www.apache.org/licenses/LICENSE-2.08#9# Unless required by applicable law or agreed to in writing, software10# distributed under the License is distributed on an "AS IS" BASIS,11# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.12# See the License for the specific language governing permissions and13# limitations under the License.14"""Tests for xarray_beam._src.core."""15from absl.testing import absltest16from absl.testing import parameterized17import dask.array as da18import numpy as np19import xarray20import xarray_beam as xbeam21from xarray_beam._src import test_util22# pylint: disable=expression-not-assigned23# pylint: disable=pointless-statement24class DatasetToZarrTest(test_util.TestCase):25  def test_open_zarr(self):26    source_ds = xarray.Dataset(27        {'foo': ('x', da.arange(0, 60, 10, chunks=2))},28    )29    temp_dir = self.create_tempdir().full_path30    source_ds.to_zarr(temp_dir)31    roundtripped_ds, chunks = xbeam.open_zarr(temp_dir)32    xarray.testing.assert_identical(roundtripped_ds, source_ds)33    self.assertEqual(roundtripped_ds.chunks, {})34    self.assertEqual(chunks, {'x': 2})35  def test_open_zarr_inconsistent(self):36    source_ds = xarray.Dataset(37        {38            'foo': ('x', da.arange(0, 60, 10, chunks=2)),39            'bar': ('x', da.arange(0, 60, 10, chunks=3)),40        },41    )42    temp_dir = self.create_tempdir().full_path43    source_ds.to_zarr(temp_dir)44    with self.assertRaisesRegex(45        ValueError,46        "inconsistent chunk sizes on Zarr dataset for dimension 'x': {2, 3}",47    ):48      xbeam.open_zarr(temp_dir)49  def test_make_template(self):50    source = xarray.Dataset(51        {52            'foo': ('x', np.ones(3)),53            'bar': ('x', np.ones(3)),54        },55    )56    actual = xbeam.make_template(source)57    expected = source * 058    xarray.testing.assert_identical(actual, expected)59    self.assertEqual(actual.chunks, {'x': (3,)})60  def test_chunks_to_zarr(self):61    dataset = xarray.Dataset(62        {'foo': ('x', np.arange(0, 60, 10))},63        coords={'x': np.arange(6)},64    )65    chunked = dataset.chunk()66    inputs = [67        (xbeam.Key({'x': 0}), dataset),68    ]69    with self.subTest('no template'):70      temp_dir = self.create_tempdir().full_path71      inputs | xbeam.ChunksToZarr(temp_dir)72      result = xarray.open_zarr(temp_dir, consolidated=True)73      xarray.testing.assert_identical(dataset, result)74    with self.subTest('with template'):75      temp_dir = self.create_tempdir().full_path76      inputs | xbeam.ChunksToZarr(temp_dir, chunked)77      result = xarray.open_zarr(temp_dir, consolidated=True)78      xarray.testing.assert_identical(dataset, result)79    with self.subTest('with zarr_chunks and with template'):80      temp_dir = self.create_tempdir().full_path81      zarr_chunks = {'x': 3}82      inputs | xbeam.ChunksToZarr(temp_dir, chunked, zarr_chunks)83      result = xarray.open_zarr(temp_dir, consolidated=True)84      xarray.testing.assert_identical(dataset, result)85      self.assertEqual(result.chunks, {'x': (3, 3)})86    with self.subTest('with zarr_chunks and no template'):87      temp_dir = self.create_tempdir().full_path88      zarr_chunks = {'x': 3}89      inputs | xbeam.ChunksToZarr(temp_dir, zarr_chunks=zarr_chunks)90      result = xarray.open_zarr(temp_dir, consolidated=True)91      xarray.testing.assert_identical(dataset, result)92      self.assertEqual(result.chunks, {'x': (3, 3)})93    temp_dir = self.create_tempdir().full_path94    with self.assertRaisesRegex(95        ValueError,96        'template does not have any variables chunked with Dask',97    ):98      xbeam.ChunksToZarr(temp_dir, dataset)99    temp_dir = self.create_tempdir().full_path100    template = chunked.assign_coords(x=np.zeros(6))101    with self.assertRaisesRegex(102        ValueError,103        'template and chunk indexes do not match',104    ):105      inputs | xbeam.ChunksToZarr(temp_dir, template)106    inputs2 = [107        (xbeam.Key({'x': 0}), dataset.expand_dims(z=[1, 2])),108    ]109    temp_dir = self.create_tempdir().full_path110    with self.assertRaisesRegex(111        ValueError,112        'unexpected new indexes found in chunk',113    ):114      inputs2 | xbeam.ChunksToZarr(temp_dir, template)115  def test_multiple_vars_chunks_to_zarr(self):116    dataset = xarray.Dataset(117        {118            'foo': ('x', np.arange(0, 60, 10)),119            'bar': ('x', -np.arange(6)),120        },121        coords={'x': np.arange(6)},122    )123    chunked = dataset.chunk()124    inputs = [125        (xbeam.Key({'x': 0}, {'foo'}), dataset[['foo']]),126        (xbeam.Key({'x': 0}, {'bar'}), dataset[['bar']]),127    ]128    with self.subTest('no template'):129      temp_dir = self.create_tempdir().full_path130      inputs | xbeam.ChunksToZarr(temp_dir)131      result = xarray.open_zarr(temp_dir, consolidated=True)132      xarray.testing.assert_identical(dataset, result)133    with self.subTest('with template'):134      temp_dir = self.create_tempdir().full_path135      inputs | xbeam.ChunksToZarr(temp_dir, chunked)136      result = xarray.open_zarr(temp_dir, consolidated=True)137      xarray.testing.assert_identical(dataset, result)138  @parameterized.named_parameters(139      {140          'testcase_name': 'combined_coords',141          'coords': {'bar': (('x', 'y'), -np.arange(6).reshape(3, 2))},142      },143      {144          'testcase_name': 'separate_coords',145          'coords': {'x': np.arange(3), 'y': np.arange(2)},146      },147  )148  def test_2d_chunks_to_zarr(self, coords):149    dataset = xarray.Dataset(150        {'foo': (('x', 'y'), np.arange(0, 60, 10).reshape(3, 2))},151        coords=coords,152    )153    with self.subTest('partial key'):154      inputs = [(xbeam.Key({'x': 0}), dataset)]155      temp_dir = self.create_tempdir().full_path156      inputs | xbeam.ChunksToZarr(temp_dir)157      result = xarray.open_zarr(temp_dir, consolidated=True)158      xarray.testing.assert_identical(dataset, result)159    with self.subTest('split along partial key'):160      inputs = [(xbeam.Key({'x': 0}), dataset)]161      temp_dir = self.create_tempdir().full_path162      inputs | xbeam.SplitChunks({'x': 1}) | xbeam.ChunksToZarr(temp_dir)163      result = xarray.open_zarr(temp_dir, consolidated=True)164      xarray.testing.assert_identical(dataset, result)165    with self.subTest('full key'):166      inputs = [(xbeam.Key({'x': 0, 'y': 0}), dataset)]167      temp_dir = self.create_tempdir().full_path168      inputs | xbeam.ChunksToZarr(temp_dir)169      result = xarray.open_zarr(temp_dir, consolidated=True)170      xarray.testing.assert_identical(dataset, result)171  def test_dataset_to_zarr_simple(self):172    dataset = xarray.Dataset(173        {'foo': ('x', np.arange(0, 60, 10))},174        coords={'x': np.arange(6)},175        attrs={'meta': 'data'},176    )177    chunked = dataset.chunk({'x': 3})178    temp_dir = self.create_tempdir().full_path179    test_util.EagerPipeline() | xbeam.DatasetToZarr(chunked, temp_dir)180    actual = xarray.open_zarr(temp_dir, consolidated=True)181    xarray.testing.assert_identical(actual, dataset)182  def test_dataset_to_zarr_unchunked(self):183    dataset = xarray.Dataset(184        {'foo': ('x', np.arange(0, 60, 10))},185    )186    temp_dir = self.create_tempdir().full_path187    with self.assertRaisesRegex(188        ValueError, 'template does not have any variables chunked with Dask'189    ):190      test_util.EagerPipeline() | xbeam.DatasetToZarr(dataset, temp_dir)191  def test_validate_zarr_chunk_accepts_partial_key(self):192    dataset = xarray.Dataset(193        {'foo': (('x', 'y'), np.zeros((3, 2)))},194        coords={'x': np.arange(3), 'y': np.arange(2)},195    )196    # Should not raise an exception:197    xbeam._src.zarr._validate_zarr_chunk(198        key=xbeam.Key({'x': 0}),199        chunk=dataset,200        template=dataset.chunk(),201        zarr_chunks=None,202    )203  def test_to_zarr_wrong_multiple_error(self):204    inputs = [205        (xbeam.Key({'x': 3}), xarray.Dataset({'foo': ('x', np.arange(3, 6))})),206    ]207    temp_dir = self.create_tempdir().full_path208    with self.assertRaisesRegex(209        ValueError,210        "chunk offset 3 along dimension 'x' is not a multiple of zarr chunks "211        "{'x': 4}",212    ):213      inputs | xbeam.ChunksToZarr(temp_dir, zarr_chunks={'x': 4})214  def test_to_zarr_needs_consolidation_error(self):215    ds = xarray.Dataset({'foo': ('x', np.arange(6))})216    inputs = [217        (xbeam.Key({'x': 0}), ds.head(3)),218        (xbeam.Key({'x': 3}), ds.tail(3)),219    ]220    temp_dir = self.create_tempdir().full_path221    with self.assertRaisesRegex(222        ValueError, 'chunk is smaller than zarr chunks'223    ):224      inputs | xbeam.ChunksToZarr(temp_dir, zarr_chunks={'x': 6})225    with self.assertRaisesRegex(226        ValueError, 'chunk is smaller than zarr chunks'227    ):228      inputs | xbeam.ChunksToZarr(temp_dir, template=ds.chunk())229if __name__ == '__main__':...

test_temp_folder.py

Source:test_temp_folder.py

1# coding=utf-82import pytest3from edlm.convert._temp_folder import Context, TempDir4def test_temp_dir():5    ctx = Context()6    assert ctx.temp_dir is None7    with TempDir(ctx):8        assert ctx.temp_dir.is_dir()9        assert ctx.temp_dir.exists()10        temp_dir = ctx.temp_dir11    assert ctx.temp_dir is None12    assert not temp_dir.exists()13def test_temp_dir_keep():14    ctx = Context()15    ctx.keep_temp_dir = True16    assert ctx.temp_dir is None17    with TempDir(ctx):18        assert ctx.temp_dir.is_dir()...

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