Test your AI Agents with the all-new Agent to Agent Testing Platform.Learn More

How to use get_cc method in autotest

Best Python code snippet using autotest_python

tst_composite_omit_map_2.py

Source:tst_composite_omit_map_2.py

...31ATOM     18  CA  PHE A   2       8.874  10.605   8.831  1.00 10.00           C32TER33END34"""35def get_cc(mc1, mc2, xrs):36  crystal_gridding = mc1.crystal_gridding(37    d_min             = mc1.d_min(),38    symmetry_flags    = maptbx.use_space_group_symmetry,39    resolution_factor = 0.25)40  fft_map = miller.fft_map(41    crystal_gridding     = crystal_gridding,42    fourier_coefficients = mc1)43  fft_map.apply_sigma_scaling()44  m1 = fft_map.real_map_unpadded()45  fft_map = miller.fft_map(46    crystal_gridding     = crystal_gridding,47    fourier_coefficients = mc2)48  fft_map.apply_sigma_scaling()49  m2 = fft_map.real_map_unpadded()50  assert m1.focus()==m2.focus()51  assert m1.all()==m2.all()52  sel = maptbx.grid_indices_around_sites(53    unit_cell  = mc1.unit_cell(),54    fft_n_real = m1.focus(),55    fft_m_real = m1.all(),56    sites_cart = flex.vec3_double(xrs.sites_cart()),57    site_radii = flex.double([1.5]*xrs.scatterers().size()))58  cc = flex.linear_correlation(x=m1.select(sel), y=m2.select(sel)).coefficient()59  def md(m, xrs):60    r = flex.double()61    for sf in xrs.sites_frac():62      r.append(m.eight_point_interpolation(sf))63    return flex.mean(r)64  return cc, md(m=m1, xrs=xrs), md(m=m2, xrs=xrs)65def run(args):66  pdb_inp = iotbx.pdb.input(source_info=None, lines=pdb_str)67  ph = pdb_inp.construct_hierarchy()68  ph.write_pdb_file(file_name="m.pdb")69  xrs = pdb_inp.xray_structure_simple()70  sel = ph.atom_selection_cache().selection("resseq 1")71  xrs1 = xrs.select( sel)72  xrs2 = xrs.select(~sel)73  #74  F  =  xrs.structure_factors(d_min=1.5).f_calc()75  FB = xrs1.structure_factors(d_min=1.5).f_calc()76  FC =   FB.phase_transfer(phase_source=F)77  #78  mtz_dataset = abs(FB).as_mtz_dataset(column_root_label="F-obs")79  mtz_dataset.add_miller_array(miller_array=FB.generate_r_free_flags(),80    column_root_label="R-free-flags")81  mtz_object = mtz_dataset.mtz_object()82  mtz_object.write(file_name = "data.mtz")83  #84  mtz_dataset = F.as_mtz_dataset(column_root_label="f")85  mtz_dataset.add_miller_array(miller_array=FB, column_root_label="FB")86  mtz_dataset.add_miller_array(miller_array=FC, column_root_label="FC")87  mtz_dataset.add_miller_array(miller_array=abs(FB), column_root_label="FOBS")88  #89  fmodel = mmtbx.f_model.manager(f_obs = abs(FB), xray_structure = xrs)90  # mc is model biased: one should not see any density for resseq 291  mc = fmodel.electron_density_map().map_coefficients(92    map_type     = "Fo",93    isotropize   = False,94    fill_missing = False)95  #96  print(get_cc(mc1=mc, mc2=F,  xrs=xrs1), get_cc(mc1=mc, mc2=F,  xrs=xrs2))97  print(get_cc(mc1=mc, mc2=FB, xrs=xrs1), get_cc(mc1=mc, mc2=FB, xrs=xrs2))98  print(get_cc(mc1=mc, mc2=FC, xrs=xrs1), get_cc(mc1=mc, mc2=FC, xrs=xrs2))99  print()100  #101  crystal_gridding = fmodel.f_obs().crystal_gridding(102    d_min             = fmodel.f_obs().d_min(),103    symmetry_flags    = maptbx.use_space_group_symmetry,104    resolution_factor = 0.25)105  #106  oo = mmtbx.maps.composite_omit_map.run(107    crystal_gridding     = crystal_gridding,108    full_resolution_map  = False,109    fmodel               = fmodel.deep_copy(),110    box_size_as_fraction = 0.2)111  mco = oo.map_coefficients(filter_noise=False)112  print(get_cc(mc1=mco, mc2=F, xrs=xrs1), get_cc(mc1=mco, mc2=F, xrs=xrs2))113  #114  mtz_dataset.add_miller_array(miller_array=mco, column_root_label="O")115  mtz_dataset.add_miller_array(miller_array=mc, column_root_label="mc")116  #117  mtz_object = mtz_dataset.mtz_object()118  mtz_object.write(file_name = "m.mtz")119if (__name__ == "__main__"):...

drink.py

Source:drink.py

...10d = None11character().create_cc_nx(cc, 0, constitution*6, 'long', reset_to="0")12#return f'''embed -title "Test" -desc "{character().resistances}" '''13if help:14	return f'''embed -title "{name} considers getting another drink" -desc "What's one more, right?\n\n**Intoxication**\n{character().get_cc(cc)}/{character().get_cc_max(cc)}\n\n**Stage**\n{floor(character().get_cc(cc)/constitution)}/6"'''15else:16	for x in drinks:17		if args[0].lower() in x.lower():18			au += drinks[x]19			d = x20	if not d:21		return f'''embed -title "{name} drinks...something we don't sell here" -desc "Check your spelling of the drink!" '''22	au = int(au/2) if "poison" in str(character().resistances.resist) else au23	#return f'''embed -title "Test" -desc "{au}" '''24	au = int(au*2) if get('size','Medium') == "Small" or get('size','Medium') == "Tiny" else au25	#return f'''embed -title "Test" -desc "{au}" '''26	character().mod_cc(cc, au)27	cs = floor(character().get_cc(cc)/constitution)28	drunk = statlist[cs]29	if d == "Phoenix Fire":30		beakRoll = roll("1d4")31		beakd = this["Beak"][str(beakRoll)]32		if beakRoll == 1:33			dmg = vroll("1d4[fire]")34			totaldmg = dmg.total35			character().modify_hp(-totaldmg)36			return f'''embed -title "{name} drinks {d} and is {drunk}!" -desc "{status[drunk]}\n\n**Talon of the Phoenix**\nYou take {dmg} fire damage as the drink burns your stomach internally\n\n**Intoxication**\n{character().get_cc(cc)}/{character().get_cc_max(cc)}\n\n**Stage**\n{cs}/6\n\n**{name}**\n{character().hp_str()}" '''37		return f'''embed -title "{name} drinks {d} and is {drunk}!" -desc "{status[drunk]}\n\n**Talon of the Phoenix**\n{beakd}\n\n**Intoxication**\n{character().get_cc(cc)}/{character().get_cc_max(cc)}\n\n**Stage**\n{cs}/6" '''38	return f'''embed -title "{name} drinks {d} and is {drunk}!" -desc "{status[drunk]}\n\n**Intoxication**\n{character().get_cc(cc)}/{character().get_cc_max(cc)}\n\n**Stage**\n{cs}/6" '''39</drac2>40-thumb "<image>"...

Automation Testing Tutorials

Learn to execute automation testing from scratch with LambdaTest Learning Hub. Right from setting up the prerequisites to run your first automation test, to following best practices and diving deeper into advanced test scenarios. LambdaTest Learning Hubs compile a list of step-by-step guides to help you be proficient with different test automation frameworks i.e. Selenium, Cypress, TestNG etc.