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How to use test_boolean method in autotest

Best Python code snippet using autotest_python

test_xclusion_crits.py

Source:test_xclusion_crits.py

1# ----------------------------------------------------------------------------2# Copyright (c) 2020, Franck Lejzerowicz.3#4# Distributed under the terms of the Modified BSD License.5#6# The full license is in the file LICENSE, distributed with this software.7# ----------------------------------------------------------------------------8import unittest9import pandas as pd10import pkg_resources11from pandas.testing import assert_frame_equal12from Xclusion_criteria.xclusion_crits import (13    check_in_md,14    check_factors,15    check_index,16    check_islist,17    check_key,18    check_numeric_indicator,19    check_var_in_md,20    get_criteria,21    do_filtering22)23ROOT = pkg_resources.resource_filename('Xclusion_criteria', 'tests')24class TestCrits(unittest.TestCase):25    def setUp(self):26        self.messages = []27        self.criteria = {}28        self.md = pd.DataFrame({29            'antibiotic_history': ['Yes', 'No', 'No'],30            'col2': [1., 2., 3.],31            'col3': [1.3, 1, 'missing']32        })33        self.nulls = ['missing', 'not applicable']34    def test_check_in_md(self):35        check_in_md(36            ['var_1', 'var_2', 'var_3'],37            ['var_1', 'var_2'],38            self.criteria,39            self.messages,40            ['missing', 'not applicable'],41            'init'42        )43        criteria = {'init': {44                ('var_1', '0'): ['missing', 'not applicable'],45                ('var_2', '0'): ['missing', 'not applicable']46            }47        }48        messages = ['Variable var_3 not in metadata (skipped)']49        self.assertEqual(self.criteria, criteria)50        self.assertEqual(self.messages, messages)51    def test_check_factors(self):52        test_message = []53        test_boolean, test_values = check_factors('col', '2', ['what', 'ever'], self.nulls, pd.DataFrame({'col': ['anything', 'else']}), test_message)54        self.assertEqual(test_boolean, False)55        self.assertEqual(test_values, ['what', 'ever'])56        self.assertEqual(test_message, [])57        test_message = []58        test_boolean, test_values = check_factors('col', '1', ['f4', 'f5'], self.nulls, pd.DataFrame({'col': ['f1', 'f2']}), test_message)59        self.assertEqual(test_boolean, True)60        self.assertEqual(test_values, [])61        self.assertEqual(test_message, ['Subset values for variable col not in table (skipped)'])62        test_message = []63        test_boolean, test_values = check_factors('col', '1', ['f1', 'f2', 'f3'], self.nulls, pd.DataFrame({'col': ['f1', 'f2']}), test_message)64        self.assertEqual(test_boolean, False)65        self.assertEqual(test_values, ['f1', 'f2'])66        self.assertEqual(test_message, ['[Warning] Subset values for variable col not in table\n - f3'])67    def test_check_index(self):68        test_boolean = check_index('0', ['f1', 'f2', 'f3'], [])69        self.assertEqual(test_boolean, False)70        test_boolean = check_index('1', ['f1', 'f2', 'f3'], [])71        self.assertEqual(test_boolean, False)72        test_message = []73        test_boolean = check_index('2', [None], test_message)74        self.assertEqual(test_boolean, True)75        test_message = []76        test_boolean = check_index('2', ['f1', 'f2', 'f3'], test_message)77        self.assertEqual(test_boolean, True)78        self.assertEqual(test_message,79                         ['For min-max subsetting, two-items list need: no min (or no max) should be "None"'])80    def check_is_list(self):81        test_messages = []82        test_boolean = check_islist('var', ['f1', 'f2', 'f3'], test_messages)83        self.assertEqual(test_boolean, False)84        self.assertEqual(test_messages, [])85        test_messages = []86        test_boolean = check_islist('var', 'f1', test_messages)87        self.assertEqual(test_boolean, True)88        self.assertEqual(test_messages, ['Values to subset for must be in a list format (var skipped)'])89        test_messages = []90        test_boolean = check_islist('var', False, test_messages)91        self.assertEqual(test_boolean, True)92        self.assertEqual(test_messages, ['Values to subset for must be in a list format (var skipped)'])93        test_messages = []94        test_boolean = check_islist('var', {'f1'}, test_messages)95        self.assertEqual(test_boolean, True)96        self.assertEqual(test_messages, ['Values to subset for must be in a list format (var skipped)'])97    def check_numeric_indicator(self):98        test_boolean = check_numeric_indicator('col', '0', [])99        self.assertEqual(test_boolean, False)100        test_boolean = check_numeric_indicator('col', '1', [])101        self.assertEqual(test_boolean, False)102        test_boolean = check_numeric_indicator('col', '2', [])103        self.assertEqual(test_boolean, False)104        test_messages = []105        test_boolean = check_numeric_indicator('col', 'x', test_messages)106        self.assertEqual(test_boolean, False)107        self.assertEqual(test_messages, ['Numeric indicator not "0", "1" or "2" (x) (col skipped)'])108    def check_var_in_md(self):109        test_messages = []110        test_boolean = check_var_in_md('col1', ['col1', 'col2'], test_messages)111        self.assertEqual(test_boolean, False)112        self.assertEqual(test_messages, [])113        test_boolean = check_var_in_md('col1', ['col2', 'col3'], test_messages)114        self.assertEqual(test_boolean, True)115        self.assertEqual(test_messages, ['Variable col1 not in metadata (skipped)'])116    def check_in_md(self):117        test_messages = []118        test_criteria = {}119        check_in_md(['col1', 'col2'], ['col1', 'col2', 'col3'],120                    test_criteria, test_messages, ['missing'], 'init')121        self.assertEqual(test_messages, [])122        self.assertEqual(test_criteria, {('col1', '0'): ['missing'], ('col2', '0'): ['missing']})123        test_messages = []124        test_criteria = {}125        check_in_md(['col1', 'col2'], ['col2', 'col3'],126                    test_criteria, test_messages, ['missing'], 'init')127        self.assertEqual(test_messages, ['Variable col1 not in metadata (skipped)'])128        self.assertEqual(test_criteria, {('col1', '0'): ['missing']})129        test_messages = []130        test_criteria = {}131        check_in_md(['col1', 'col2'], ['col3'],132                    test_criteria, test_messages, ['missing'], 'init')133        self.assertEqual(test_messages, ['Variable col1 not in metadata (skipped)',134                                         'Variable col2 not in metadata (skipped)'])135        self.assertEqual(test_criteria, {})136    def test_check_key(self):137        test_messages = []138        test_boolean = check_key('col,0', test_messages)139        self.assertEqual(test_boolean, False)140        self.assertEqual(test_messages, [])141        test_messages = []142        test_boolean = check_key('col+0', test_messages)143        self.assertEqual(test_boolean, True)144        self.assertEqual(test_messages, ['Must have a metadata variable and a numeric separated by a comma (",")'])145        test_messages = []146        test_boolean = check_key('col,0,', test_messages)147        self.assertEqual(test_boolean, True)148        self.assertEqual(test_messages, ['Must have a metadata variable and a numeric separated by a comma (",")'])149    def test_get_criteria(self):150        no_comma = '%s/criteria/criteria_no_comma.yml' % ROOT151        test_messages = []152        test_criteria = get_criteria(no_comma, self.md, self.nulls, test_messages)153        self.assertEqual(test_criteria, {})154        self.assertEqual(test_messages, ['Must have a metadata variable and a numeric separated by a comma (",")'])155        no_correct_index = '%s/criteria/criteria_no_correct_index.yml' % ROOT156        test_messages = []157        test_criteria = get_criteria(no_correct_index, self.md, self.nulls, test_messages)158        self.assertEqual(test_criteria, {})159        self.assertEqual(test_messages, ['Numeric indicator not "0", "1" or "2" (9) (antibiotic_history skipped)'])160        no_index = '%s/criteria/criteria_no_index.yml' % ROOT161        test_messages = []162        test_criteria = get_criteria(no_index, self.md, self.nulls, test_messages)163        self.assertEqual(test_criteria, {})164        self.assertEqual(test_messages, ['Must have a metadata variable and a numeric separated by a comma (",")'])165        var_not_in_md = '%s/criteria/criteria_var_not_in_md.yml' % ROOT166        test_messages = []167        test_criteria = get_criteria(var_not_in_md, self.md, self.nulls, test_messages)168        self.assertEqual(test_criteria, {})169        self.assertEqual(test_messages, ['Variable not_in_md not in metadata (skipped)'])170        is_not_list = '%s/criteria/criteria_is_not_list.yml' % ROOT171        test_messages = []172        test_criteria = get_criteria(is_not_list, self.md, self.nulls, test_messages)173        self.assertEqual(test_criteria, {})174        self.assertEqual(test_messages, ['Values to subset for must be in a list format (antibiotic_history skipped)'])175        wrong_minmax = '%s/criteria/criteria_wrong_minmax.yml' % ROOT176        test_messages = []177        test_criteria = get_criteria(wrong_minmax, self.md, self.nulls, test_messages)178        self.assertEqual(test_criteria, {})179        self.assertEqual(180            test_messages,181            ['For min-max subsetting, two-items list need: no min (or no max) should be "None"'])182    def test_do_filtering(self):183        md_abx_filt_y = pd.DataFrame({'antibiotic_history': ['Yes'], 'col2': [1.], 'col3': ['1.3']})184        test_name, test_boolean, test_md_abx_y = do_filtering(self.md, 'antibiotic_history', '1', ['Yes'], [], [])185        md_abx_filt_y.col3 = md_abx_filt_y.col3.astype('object')186        test_md_abx_y.col3 = md_abx_filt_y.col3.astype('object')187        self.assertEqual(test_name, 'antibiotic_history')188        self.assertEqual(test_boolean, False)189        assert_frame_equal(md_abx_filt_y, test_md_abx_y)190        md_abx_filt_n = pd.DataFrame({'antibiotic_history': ['No', 'No'], 'col2': [2., 3.], 'col3': [1, 'missing']})191        test_name, test_boolean, test_md_abx_x = do_filtering(self.md, 'antibiotic_history', '1', ['No'], [], [])192        md_abx_filt_n.index = range(md_abx_filt_n.shape[0])193        test_md_abx_x.index = range(test_md_abx_x.shape[0])194        self.assertEqual(test_name, 'antibiotic_history')195        self.assertEqual(test_boolean, False)196        assert_frame_equal(md_abx_filt_n, test_md_abx_x)197        md_abx_filt_n = pd.DataFrame({'antibiotic_history': ['No', 'No'], 'col2': [2., 3.], 'col3': [1, 'missing']})198        test_name, test_boolean, test_md_abx_x = do_filtering(self.md, 'antibiotic_history', '0', ['Yes'], [], [])199        md_abx_filt_n.index = range(md_abx_filt_n.shape[0])200        test_md_abx_x.index = range(test_md_abx_x.shape[0])201        self.assertEqual(test_name, 'No_antibiotic_history')202        self.assertEqual(test_boolean, False)203        assert_frame_equal(md_abx_filt_n, test_md_abx_x)204        md_abx_filt_mm = pd.DataFrame({'antibiotic_history': ['Yes', 'No'], 'col2': [1., 2.], 'col3': ['1.3', '1']})205        test_name, test_boolean, test_md_abx_mm = do_filtering(self.md, 'col2', '2', ['None', 3], ['col2'], [])206        # weirdly, if the two col3 contents are "object" and identical, the test fails, hence:207        md_abx_filt_mm.col3 = md_abx_filt_mm.col3.astype('float')208        test_md_abx_mm.col3 = test_md_abx_mm.col3.astype('float')209        md_abx_filt_mm.index = range(md_abx_filt_mm.shape[0])210        test_md_abx_mm.index = range(test_md_abx_mm.shape[0])211        self.assertEqual(test_name, 'Range_col2')212        self.assertEqual(test_boolean, False)213        assert_frame_equal(md_abx_filt_mm, test_md_abx_mm)214        md_abx_filt_mm = pd.DataFrame({'antibiotic_history': ['No'], 'col2': [2.], 'col3': ['1']})215        test_name, test_boolean, test_md_abx_mm = do_filtering(self.md, 'col2', '2', [1, 3], ['col2'], [])216        # weirdly, if the two col3 contents are "object" and identical, the test fails, hence:217        md_abx_filt_mm.col3 = md_abx_filt_mm.col3.astype('float')218        test_md_abx_mm.col3 = test_md_abx_mm.col3.astype('float')219        md_abx_filt_mm.index = range(md_abx_filt_mm.shape[0])220        test_md_abx_mm.index = range(test_md_abx_mm.shape[0])221        self.assertEqual(test_name, 'Range_col2')222        self.assertEqual(test_boolean, False)223        assert_frame_equal(md_abx_filt_mm, test_md_abx_mm)224        test_messages = []225        test_name, test_boolean, output_md = do_filtering(self.md, 'col2', '2', ['None', 3], ['col3'], test_messages)226        self.assertEqual(test_name, '')227        self.assertEqual(test_boolean, True)228        self.assertEqual(test_messages, ['Metadata variable col2 is not numerical (skipping)'])229        test_messages = []230        test_name, test_boolean, output_md = do_filtering(self.md, 'col2', '2', ['None', 'None'], ['col2'], test_messages)231        self.assertEqual(test_name, '')232        self.assertEqual(test_boolean, True)233        self.assertEqual(test_messages, ['[Warning] Both numerical bounds for col2 are "None" (skipping)'])234if __name__ == '__main__':...

test_d04.py

Source:test_d04.py

...31# ex0032print("\nTests for ex00:")33run_command("rm -f cook.txt")34exitcode, out, err = run_command("curl -v -c cook.txt '" + day_on_server_location + "/ex00/index.php' | grep 'login'")35test_boolean('name="login"' in out, "login named correctly")36test_boolean(("value" not in out) or ('value=""' in out), "login set correctly")37exitcode, out, err = run_command("curl -v -c cook.txt '" + day_on_server_location + "/ex00/index.php' | grep 'passwd'")38test_boolean('name="passwd"' in out, "passwd named correctly")39test_boolean(("value" not in out) or ('value=""' in out), "passwd set correctly")40exitcode, out, err = run_command("curl -v -c cook.txt '" + day_on_server_location + "/ex00/index.php' | grep 'submit'")41test_boolean('name="submit"' in out, "submit named correctly")42test_boolean(("value" not in out) or ('value="OK"' in out), "submit set correctly")43exitcode, out, err = run_command("curl -v -b cook.txt '" + day_on_server_location + "/ex00/index.php?login=sb&passwd=beeone' | grep 'login'")44test_boolean('name="login"' in out, "login named correctly after no ok")45test_boolean(("value" not in out) or ('value=""' in out), "login set correctly after no ok")46exitcode, out, err = run_command("curl -v -b cook.txt '" + day_on_server_location + "/ex00/index.php?login=sb&passwd=beeone' | grep 'passwd'")47test_boolean('name="passwd"' in out, "passwd named correctly after no ok")48test_boolean(("value" not in out) or ('value=""' in out), "passwd set correctly after no ok")49exitcode, out, err = run_command("curl -v -b cook.txt '" + day_on_server_location + "/ex00/index.php?login=sb&passwd=beeone' | grep 'submit'")50test_boolean('name="submit"' in out, "submit named correctly after no ok")51test_boolean(("value" not in out) or ('value="OK"' in out), "submit set correctly after no ok")52exitcode, out, err = run_command("curl -v -b cook.txt '" + day_on_server_location + "/ex00/index.php?login=sb&passwd=beeone&submit=OK' | grep 'login'")53test_boolean('name="login"' in out, "login named correctly after ok")54test_boolean('value="sb"' in out, "login set correctly after ok")55exitcode, out, err = run_command("curl -v -b cook.txt '" + day_on_server_location + "/ex00/index.php?login=sb&passwd=beeone' | grep 'passwd'")56test_boolean('name="passwd"' in out, "passwd named correctly after ok")57test_boolean('value="beeone"' in out, "passwd set correctly after ok")58exitcode, out, err = run_command("curl -v -b cook.txt '" + day_on_server_location + "/ex00/index.php?login=sb&passwd=beeone' | grep 'submit'")59test_boolean('name="submit"' in out, "submit named correctly after ok")60test_boolean('value="OK"' in out, "submit set correctly after ok")61exitcode, out, err = run_command("curl -v -b cook.txt '" + day_on_server_location + "/ex00/index.php' | grep 'login'")62test_boolean('name="login"' in out, "login named correctly after not passing stuff in url")63test_boolean('value="sb"' in out, "login set correctly after not passing stuff in url")64exitcode, out, err = run_command("curl -v -b cook.txt '" + day_on_server_location + "/ex00/index.php' | grep 'passwd'")65test_boolean('name="passwd"' in out, "passwd named correctly after not passing stuff in url")66test_boolean('value="beeone"' in out, "passwd set correctly after not passing stuff in url")67exitcode, out, err = run_command("curl -v -b cook.txt '" + day_on_server_location + "/ex00/index.php' | grep 'submit'")68test_boolean('name="submit"' in out, "submit named correctly after not passing stuff in url")69test_boolean('value="OK"' in out, "submit set correctly after not passing stuff in url")70exitcode, out, err = run_command("curl -v '" + day_on_server_location + "/ex00/index.php' | grep 'login'")71test_boolean('name="login"' in out, "login named correctly after removing cookie file")72test_boolean(("value" not in out) or ('value=""' in out), "login set correctly after removing cookie file")73exitcode, out, err = run_command("curl -v -c cook.txt '" + day_on_server_location + "/ex00/index.php' | grep 'passwd'")74test_boolean('name="passwd"' in out, "passwd named correctly after removing cookie file")75test_boolean(("value" not in out) or ('value=""' in out), "passwd set correctly after removing cookie file")76exitcode, out, err = run_command("curl -v -c cook.txt '" + day_on_server_location + "/ex00/index.php' | grep 'submit'")77test_boolean('name="submit"' in out, "submit named correctly after removing cookie file")78test_boolean(("value" not in out) or ('value="OK"' in out), "submit set correctly after removing cookie file")79run_command("rm -f cook.txt")80print("")81# ex0182print("Tests for ex01:")83run_command("rm -rf " + expanduser(location_of_private))84test_command("curl -d login=toto1 -d passwd=titi1 -d submit=OK '" + day_on_server_location + "/ex01/create.php'", "OK\n", 0)85password_file = expanduser(location_of_private + "/passwd")86test_boolean('a:1:{' == get_file_contents(password_file)[:5]87                  , "begin part of serialized file (" + password_file + ")")88test_command("curl -d login=toto1 -d passwd=titi1 -d submit=OK '" + day_on_server_location + "/ex01/create.php'", "ERROR\n", 0)89test_command("curl -d login=toto2 -d passwd= -d submit=OK '" + day_on_server_location + "/ex01/create.php'", "ERROR\n", 0)90test_command("curl -d login= -d passwd=hello -d submit=OK '" + day_on_server_location + "/ex01/create.php'", "ERROR\n", 0)91test_command("curl -d login=toto1 -d passwd=titi1 -d submit=OK '" + day_on_server_location + "/ex01/create.php'", "ERROR\n", 0)92test_command("curl -d login=toto1 -d passwd=titi1 -d submit=OKK '" + day_on_server_location + "/ex01/create.php'", "ERROR\n", 0)93test_command("curl -d login=login -d passwd=password '" + day_on_server_location + "/ex01/create.php'", "ERROR\n", 0)94exitcode, out, err = run_command("curl -v '" + day_on_server_location + "/ex01/index.html'")95test_boolean('method="POST"' in out or 'method="post"' in out, "correct method")96run_command("rm -rf " + expanduser(location_of_private))97print("")98# ex0299print("Tests for ex02:")100run_command("rm -rf " + expanduser(location_of_private))101test_command("curl -d login=x -d passwd=21 -d submit=OK '" + day_on_server_location + "/ex01/create.php'", "OK\n", 0)102password_file = location_of_private + "/passwd"103test_boolean('a:1:{' == get_file_contents(location_of_private + "/passwd")[:5]104                  , "begin part of serialized file (" + password_file + ")")105test_command("curl -d login=x -d oldpw=21 -d newpw=42 -d submit=OK '" + day_on_server_location + "/ex02/modif.php'", "OK\n", 0) # change to 42106test_command("curl -d login=x -d oldpw=42 -d newpw=hello -d submit=OK '" + day_on_server_location + "/ex02/modif.php'", "OK\n", 0) # change to hello107test_command("curl -d login=x -d oldpw=hello -d newpw=42 '" + day_on_server_location + "/ex02/modif.php'", "ERROR\n", 0) # no submit=OK108test_command("curl -d login=x -d oldpw=hello -d newpw=42 -d submit=OK '" + day_on_server_location + "/ex02/modif.php'", "OK\n", 0) # change to 42109test_command("curl -d login=x -d oldpw=21 -d newpw=42 -d submit=OK '" + day_on_server_location + "/ex02/modif.php'", "ERROR\n", 0) # wrong password110test_command("curl -d login=x -d oldpw=42 -d newpw= -d submit=OK '" + day_on_server_location + "/ex02/modif.php'", "ERROR\n", 0) # blank new password111exitcode, out, err = run_command("curl -v '" + day_on_server_location + "/ex02/index.html'")112test_boolean('method="POST"' in out or 'method="post"' in out, "correct method")113run_command("rm -rf " + expanduser(location_of_private))114print("")115# ex03116print("Tests for ex03:")117run_command("rm -rf " + expanduser(location_of_private))118test_command("curl -d login=toto -d passwd=titi -d submit=OK '" + day_on_server_location + "/ex01/create.php'", "OK\n", 0)119password_file = location_of_private + "/passwd"120test_boolean('a:1:{' == get_file_contents(location_of_private + "/passwd")[:5]121                  , "begin part of serialized file (" + password_file + ")")122test_command("curl '" + day_on_server_location + "/ex03/login.php?login=toto&passwd=titi'", "OK\n", 0) # check login.php: correct123run_command("rm -rf " + expanduser(location_of_private))124run_command("curl -d login=toto -d passwd=titi -d submit=OK '" + day_on_server_location + "/ex01/create.php'")125test_command("curl -c cook.txt '" + day_on_server_location + "/ex03/login.php?login=toto&passwd=titi'", "OK\n", 0)126test_command("curl -b cook.txt '" + day_on_server_location + "/ex03/whoami.php'", "toto\n", 0)127test_command("curl -b cook.txt '" + day_on_server_location + "/ex03/logout.php'", "", 0)128test_command("curl -b cook.txt '" + day_on_server_location + "/ex03/whoami.php'", "ERROR\n", 0)129run_command("rm -f cook.txt")130# END OF TESTS  END OF TESTS  END OF TESTS  END OF TESTS  END OF TESTS...

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