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CompareMonitoring2SimusNachos12.py
Source:CompareMonitoring2SimusNachos12.py 
1#!/usr/bin/env python2#3"""4This script is making some plots from annual means of NACHSO12 outputs using cartopy5"""6## imports7import sys8import numpy as np9import numpy.ma as ma10import xarray as xr11import matplotlib.pyplot as plt12import cartopy.crs as ccrs13import cartopy.feature as cfeature14def all_plots(case1,case2,year,**kwargs):15 dirmean1='/scratch/cnt0024/hmg2840/albert7a/NACHOS12.L75/NACHOS12.L75-'+case1+'-MEAN/1d/'+year+'/'16 dirmean2='/scratch/cnt0024/hmg2840/albert7a/NACHOS12.L75/NACHOS12.L75-'+case2+'-MEAN/1d/'+year+'/'17 dirplot='/scratch/cnt0024/hmg2840/albert7a/NACHOS12.L75/PLOTS/NACHOS12.L75-'+case1+'-'+case2+'/python/'18 title="NACHOS12.L75 "+case1+"-"+case2+" "+year19 file1flxT=dirmean1+'NACHOS12.L75-'+case1+'_y'+year+'.1d_flxT.nc'20 file1T=dirmean1+'NACHOS12.L75-'+case1+'_y'+year+'.1d_gridT.nc'21 file1EKE=dirmean1+'NACHOS12.L75-'+case1+'_y'+year+'.1d_EKE.nc'22 file1MXL03=dirmean1+'NACHOS12.L75-'+case1+'_y'+year+'m03.1d_MXL.nc'23 file1MXL09=dirmean1+'NACHOS12.L75-'+case1+'_y'+year+'m09.1d_MXL.nc'24 file1ICE03=dirmean1+'NACHOS12.L75-'+case1+'_y'+year+'m03.1d_icemod3.nc'25 file1ICE09=dirmean1+'NACHOS12.L75-'+case1+'_y'+year+'m09.1d_icemod3.nc'26 file1PSI=dirmean1+'NACHOS12.L75-'+case1+'_y'+year+'.1d_PSI.nc'27 file2flxT=dirmean2+'NACHOS12.L75-'+case2+'_y'+year+'.1d_flxT.nc'28 file2T=dirmean2+'NACHOS12.L75-'+case2+'_y'+year+'.1d_gridT.nc'29 file2EKE=dirmean2+'NACHOS12.L75-'+case2+'_y'+year+'.1d_EKE.nc'30 file2MXL03=dirmean2+'NACHOS12.L75-'+case2+'_y'+year+'m03.1d_MXL.nc'31 file2MXL09=dirmean2+'NACHOS12.L75-'+case2+'_y'+year+'m09.1d_MXL.nc'32 file2ICE03=dirmean2+'NACHOS12.L75-'+case2+'_y'+year+'m03.1d_icemod3.nc'33 file2ICE09=dirmean2+'NACHOS12.L75-'+case2+'_y'+year+'m09.1d_icemod3.nc'34 file2PSI=dirmean2+'NACHOS12.L75-'+case2+'_y'+year+'.1d_PSI.nc'35 ds1T=xr.open_dataset(file1T)36 tem1=ds1T.votemper[0]37 sal1=ds1T.vosaline[0]38 ssh1=ds1T.sossheig[0]39 lat=ds1T.nav_lat40 lon=ds1T.nav_lon41 ds2T=xr.open_dataset(file2T)42 tem2=ds2T.votemper[0]43 sal2=ds2T.vosaline[0]44 ssh2=ds2T.sossheig[0]45 lat2=ds2T.nav_lat46 lon2=ds2T.nav_lon47 48 ds1MXL03=xr.open_dataset(file1MXL03)49 mxl103_rho010=ds1MXL03.somxl010[0]50 mxl103_rho030=ds1MXL03.somxl030[0]51 mxl103_t02=ds1MXL03.somxlt02[0]52 ds1MXL09=xr.open_dataset(file1MXL09)53 mxl109_rho010=ds1MXL09.somxl010[0]54 mxl109_rho030=ds1MXL09.somxl030[0]55 mxl109_t02=ds1MXL09.somxlt02[0]56 57 ds2MXL03=xr.open_dataset(file2MXL03)58 mxl203_rho010=ds2MXL03.somxl010[0]59 mxl203_rho030=ds2MXL03.somxl030[0]60 mxl203_t02=ds2MXL03.somxlt02[0]61 ds2MXL09=xr.open_dataset(file2MXL09)62 mxl209_rho010=ds2MXL09.somxl010[0]63 mxl209_rho030=ds2MXL09.somxl030[0]64 mxl209_t02=ds2MXL09.somxlt02[0]65 66 ds1EKE=xr.open_dataset(file1EKE)67 eke1=ds1EKE.voeke[0,0]68 69 ds2EKE=xr.open_dataset(file2EKE)70 eke2=ds2EKE.voeke[0,0]71 72 ds1PSI=xr.open_dataset(file1PSI)73 psi1=ds1PSI.sobarstf[0]74 75 ds2PSI=xr.open_dataset(file2PSI)76 psi2=ds2PSI.sobarstf[0]77 78 ds1flxT=xr.open_dataset(file1flxT)79 Heat1=ds1flxT.sohefldo[0]80 WaterFlx1=ds1flxT.sowaflup[0]81 WaterDmp1=ds1flxT.sowafld[0]82 83 ds2flxT=xr.open_dataset(file2flxT)84 Heat2=ds2flxT.sohefldo[0]85 WaterFlx2=ds2flxT.sowaflup[0]86 WaterDmp2=ds2flxT.sowafld[0]87 ds1ICE03=xr.open_dataset(file1ICE03)88 iconc103=ds1ICE03.siconc[0]89 ivolu103=ds1ICE03.sivolu[0]90 ds1ICE09=xr.open_dataset(file1ICE09)91 iconc109=ds1ICE09.siconc[0]92 ivolu109=ds1ICE09.sivolu[0]93 ds2ICE03=xr.open_dataset(file2ICE03)94 iconc203=ds2ICE03.siconc[0]95 ivolu203=ds2ICE03.sivolu[0]96 ds2ICE09=xr.open_dataset(file2ICE09)97 iconc209=ds2ICE09.siconc[0]98 ivolu209=ds2ICE09.sivolu[0]99 100 101 def plot_glob(fig,sub,var,vmin,vmax,unit,name,pal):102 ax = fig.add_subplot(sub,projection=ccrs.Orthographic(central_longitude=-30,103 central_latitude=35))104 cmap = plt.get_cmap(pal)105 cmap.set_under(color='grey')106 pcolor=ax.pcolormesh(lon,lat,ma.masked_invalid(var),transform=ccrs.PlateCarree(),cmap=cmap,vmin=vmin,vmax=vmax)107 ax.set_global()108 ax.add_feature(cfeature.LAND,facecolor='grey')109 ax.coastlines()110 cbar=plt.colorbar(pcolor,orientation='vertical',fraction=0.026,pad=0.1)111 cbar.ax.tick_params(labelsize=20)112 ax.set_title(name+' '+unit,size=17)113 114 def plot_glob_diff(fig,sub,var1,var2,vmin,vmax,unit,name,pal):115 ax = fig.add_subplot(sub,projection=ccrs.Orthographic(central_longitude=-30,116 central_latitude=35))117 cmap = plt.get_cmap(pal)118 cmap.set_under(color='grey')119 pcolor=ax.pcolormesh(lon,lat,ma.masked_invalid(var1-var2),transform=ccrs.PlateCarree(),cmap=cmap,vmin=vmin,vmax=vmax)120 ax.set_global()121 ax.add_feature(cfeature.LAND,facecolor='grey')122 ax.coastlines()123 cbar=plt.colorbar(pcolor,orientation='vertical',fraction=0.026,pad=0.1)124 cbar.ax.tick_params(labelsize=20)125 ax.set_title(name+' '+unit,size=17)126 def plot_atl(fig,sub,var,vmin,vmax,unit,name,pal):127 ax = fig.add_subplot(sub,projection=ccrs.PlateCarree(central_longitude=-30))128 cmap = plt.get_cmap(pal)129 ax.set_extent([-100, 50, 0, 70])130 cmap.set_under(color='grey')131 pcolor=ax.pcolormesh(lon,lat,ma.masked_invalid(var),transform=ccrs.PlateCarree(),cmap=cmap,vmin=vmin,vmax=vmax)132 ax.add_feature(cfeature.LAND,facecolor='grey')133 ax.coastlines()134 ax.gridlines(crs=ccrs.PlateCarree(), draw_labels=True,135 linewidth=2, color='gray', alpha=0.5, linestyle='--')136 fig.subplots_adjust(right=0.8)137 ax.text(-0.07, 0.55, 'Latitude (in degree)', va='bottom', ha='center',138 rotation='vertical', rotation_mode='anchor',139 transform=ax.transAxes)140 ax.text(0.5, -0.2, 'Longitude (in degree)', va='bottom', ha='center',141 rotation='horizontal', rotation_mode='anchor',142 transform=ax.transAxes)143 cbar = plt.colorbar(pcolor,orientation='horizontal',shrink=0.75)144 ax.set_title(name+' '+unit,size=17,y=1.08)145 146 def plot_atl_cont(fig,sub,var,unit,name,vmin,vmax,pal):147 ax = fig.add_subplot(sub,projection=ccrs.PlateCarree(central_longitude=-30))148 ax.set_extent([-100, 50, 0, 70])149 cmap = plt.get_cmap(pal)150 cmap.set_under(color='grey')151 pcolor=ax.pcolormesh(lon,lat,ma.masked_invalid(var),transform=ccrs.PlateCarree(),cmap=cmap,vmin=vmin,vmax=vmax)152 pcont=ax.contour(lon,lat,ma.masked_invalid(var),10,colors='k',transform=ccrs.PlateCarree())153 ax.add_feature(cfeature.LAND,facecolor='black')154 ax.coastlines()155 ax.gridlines(crs=ccrs.PlateCarree(), draw_labels=True,156 linewidth=2, color='grey', alpha=0.5, linestyle='--')157 fig.subplots_adjust(right=0.8)158 ax.text(-0.07, 0.55, 'Latitude (in degree)', va='bottom', ha='center',159 rotation='vertical', rotation_mode='anchor',160 transform=ax.transAxes)161 ax.text(0.5, -0.2, 'Longitude (in degree)', va='bottom', ha='center',162 rotation='horizontal', rotation_mode='anchor',163 transform=ax.transAxes)164 cbar = plt.colorbar(pcolor,orientation='horizontal',shrink=0.75)165 166 ax.set_title(name+' '+unit,size=17,y=1.08)167 168 def plot_natl(fig,sub,var,vmin,vmax,unit,name,pal):169 ax = fig.add_subplot(sub,projection=ccrs.PlateCarree(central_longitude=-30))170 ax.set_extent([-100, 50, 50, 70])171 cmap = plt.get_cmap(pal)172 cmap.set_under(color='grey')173 pcolor=ax.pcolormesh(lon,lat,ma.masked_invalid(var),transform=ccrs.PlateCarree(),cmap=cmap,vmin=vmin,vmax=vmax)174 ax.add_feature(cfeature.LAND,facecolor='grey')175 ax.coastlines()176 ax.gridlines(crs=ccrs.PlateCarree(), draw_labels=True,177 linewidth=2, color='gray', alpha=0.5, linestyle='--')178 fig.subplots_adjust(right=0.8)179 ax.text(-0.07, 0.55, 'Latitude (in degree)', va='bottom', ha='center',180 rotation='vertical', rotation_mode='anchor',181 transform=ax.transAxes)182 ax.text(0.5, -0.4, 'Longitude (in degree)', va='bottom', ha='center',183 rotation='horizontal', rotation_mode='anchor',184 transform=ax.transAxes)185 cbar = plt.colorbar(pcolor,orientation='horizontal',shrink=0.75)186 ax.set_title(name+' '+unit,size=17,y=1.19)187 188 print dirplot189# Tous les plots190# Tous les plots glob191# Eke, SSH,T et S192 fig = plt.figure(figsize=(22,7))193 plot_glob(fig,131,10000*eke1,0,2500,'',case1,'jet')194 plot_glob(fig,132,10000*eke2,0,2500,'',case2,'jet')195 plot_glob(fig,133,10000*eke1-10000*eke2,-500,500,'',case1+'-'+case2,'bwr')196 fig.suptitle('NACHOS12.L75 Surf EKE 1e4m2s '+year, fontsize=25)197 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_eke0_'+year+'.png')198 plt.close()199 fig = plt.figure(figsize=(22,7))200 plot_glob(fig,131,ssh1,-2.5,-0.7,'',case1,'tab20b')201 plot_glob(fig,132,ssh2,-2.5,-0.7,'',case2,'tab20b')202 plot_glob(fig,133,ssh1-ssh2,-0.2,0.2,'',case1+'-'+case2,'bwr')203 fig.suptitle('NACHOS12.L75 SSH m '+year, fontsize=25)204 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_ssh_'+year+'.png')205 plt.close()206 fig = plt.figure(figsize=(22,7))207 plot_glob(fig,131,tem1[0],-2,30,'',case1,'jet')208 plot_glob(fig,132,tem2[0],-2,30,'',case2,'jet')209 plot_glob(fig,133,tem1[0]-tem2[0],-2,2,'',case1+'-'+case2,'bwr')210 fig.suptitle('NACHOS12.L75 Surf Temperature deg C '+year, fontsize=25)211 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_t0_'+year+'.png')212 plt.close()213 fig = plt.figure(figsize=(22,7))214 plot_glob(fig,131,sal1[0],30,40,'',case1,'jet')215 plot_glob(fig,132,sal2[0],30,40,'',case2,'jet')216 plot_glob(fig,133,sal1[0]-sal2[0],-1,1,'',case1+'-'+case2,'bwr')217 fig.suptitle('NACHOS12.L75 Surf Salinity PSU '+year, fontsize=25)218 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_s0_'+year+'.png')219 plt.close()220#MXL 221 fig = plt.figure(figsize=(22,7))222 plot_glob(fig,131,mxl103_rho010,0,1500,'',case1,'jet')223 plot_glob(fig,132,mxl203_rho010,0,1500,'',case2,'jet')224 plot_glob(fig,133,mxl103_rho010-mxl203_rho010,-100,100,'',case1+'-'+case2,'bwr')225 fig.suptitle('NACHOS12.L75 March MXL rho010 m '+year, fontsize=25)226 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_mxl03_rho010_'+year+'.png')227 plt.close()228 fig = plt.figure(figsize=(22,7))229 plot_glob(fig,131,mxl109_rho010,0,200,'',case1,'jet')230 plot_glob(fig,132,mxl209_rho010,0,200,'',case2,'jet')231 plot_glob(fig,133,mxl109_rho010-mxl209_rho010,-50,50,'',case1+'-'+case2,'bwr')232 fig.suptitle('NACHOS12.L75 Sept MXL rho010 m '+year, fontsize=25)233 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_mxl09_rho010_'+year+'.png')234 plt.close()235 fig = plt.figure(figsize=(22,7))236 plot_glob(fig,131,mxl103_rho030,0,1500,'',case1,'jet')237 plot_glob(fig,132,mxl203_rho030,0,1500,'',case2,'jet')238 plot_glob(fig,133,mxl103_rho030-mxl203_rho030,-100,100,'',case1+'-'+case2,'bwr')239 fig.suptitle('NACHOS12.L75 March MXL rho030 m '+year, fontsize=25)240 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_mxl03_rho030_'+year+'.png')241 plt.close()242 fig = plt.figure(figsize=(22,7))243 plot_glob(fig,131,mxl109_rho030,0,200,'',case1,'jet')244 plot_glob(fig,132,mxl209_rho030,0,200,'',case2,'jet')245 plot_glob(fig,133,mxl109_rho030-mxl209_rho030,-50,50,'',case1+'-'+case2,'bwr')246 fig.suptitle('NACHOS12.L75 Sept MXL rho030 m '+year, fontsize=25)247 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_mxl09_rho030_'+year+'.png')248 plt.close()249 fig = plt.figure(figsize=(22,7))250 plot_glob(fig,131,mxl103_t02,0,1500,'',case1,'jet')251 plot_glob(fig,132,mxl203_t02,0,1500,'',case2,'jet')252 plot_glob(fig,133,mxl103_t02-mxl203_t02,-100,100,'',case1+'-'+case2,'bwr')253 fig.suptitle('NACHOS12.L75 March MXL t02 m '+year, fontsize=25)254 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_mxl03_t02_'+year+'.png')255 plt.close()256 fig = plt.figure(figsize=(22,7))257 plot_glob(fig,131,mxl109_t02,0,200,'',case1,'jet')258 plot_glob(fig,132,mxl209_t02,0,200,'',case2,'jet')259 plot_glob(fig,133,mxl109_t02-mxl209_t02,-50,50,'',case1+'-'+case2,'bwr')260 fig.suptitle('NACHOS12.L75 Sept MXL t02 m '+year, fontsize=25)261 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_mxl09_t02_'+year+'.png')262 plt.close()263 264#flx 265 fig = plt.figure(figsize=(22,7))266 plot_glob(fig,131,Heat1,-400,400,'',case1,'jet')267 plot_glob(fig,132,Heat2,-400,400,'',case2,'jet')268 plot_glob(fig,133,Heat1-Heat2,-100,100,'',case1+'-'+case2,'bwr')269 fig.suptitle('NACHOS12.L75 Net Heat Flux '+year, fontsize=25)270 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_heat_'+year+'.png')271 plt.close()272 fig = plt.figure(figsize=(22,7))273 plot_glob(fig,131,86400*WaterFlx1,-9,7,'',case1,'jet')274 plot_glob(fig,132,86400*WaterFlx2,-9,7,'',case2,'jet')275 plot_glob(fig,133,86400*WaterFlx1-86400*WaterFlx2,-2,2,'',case1+'-'+case2,'bwr')276 fig.suptitle('NACHOS12.L75 Water Flux '+year, fontsize=25)277 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_wflx_'+year+'.png')278 plt.close()279 fig = plt.figure(figsize=(22,7))280 plot_glob(fig,131,86400*WaterDmp1,-7,7,'',case1,'jet')281 plot_glob(fig,132,86400*WaterDmp2,-7,7,'',case2,'jet')282 plot_glob(fig,133,86400*WaterDmp1-86400*WaterDmp2,-2,2,'',case1+'-'+case2,'bwr')283 fig.suptitle('NACHOS12.L75 Water Damping '+year, fontsize=25)284 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_wdmp_'+year+'.png')285 plt.close()286 287#ice288 fig = plt.figure(figsize=(22,7))289 plot_glob(fig,131,iconc103,0,1,'',case1,'jet')290 plot_glob(fig,132,iconc203,0,1,'',case2,'jet')291 plot_glob(fig,133,iconc103-iconc203,-0.5,0.5,'',case1+'-'+case2,'bwr')292 fig.suptitle('NACHOS12.L75 March Ice concentration % '+year, fontsize=25)293 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_iceconc03_'+year+'.png')294 plt.close()295 fig = plt.figure(figsize=(22,7))296 plot_glob(fig,131,ivolu103,0,4,'',case1,'jet')297 plot_glob(fig,132,ivolu203,0,4,'',case2,'jet')298 plot_glob(fig,133,ivolu103-ivolu203,-0.5,0.5,'',case1+'-'+case2,'bwr')299 fig.suptitle('NACHOS12.L75 March Ice Volume m '+year, fontsize=25)300 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_icevolu03_'+year+'.png')301 plt.close()302 fig = plt.figure(figsize=(22,7))303 plot_glob(fig,131,iconc109,0,1,'',case1,'jet')304 plot_glob(fig,132,iconc209,0,1,'',case2,'jet')305 plot_glob(fig,133,iconc109-iconc209,-0.2,0.2,'',case1+'-'+case2,'bwr')306 fig.suptitle('NACHOS12.L75 Sept Ice concentration % '+year, fontsize=25)307 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_iceconc09_'+year+'.png')308 plt.close()309 fig = plt.figure(figsize=(22,7))310 plot_glob(fig,131,ivolu109,0,4,'',case1,'jet')311 plot_glob(fig,132,ivolu209,0,4,'',case2,'jet')312 plot_glob(fig,133,ivolu109-ivolu209,-0.5,0.5,'',case1+'-'+case2,'bwr')313 fig.suptitle('NACHOS12.L75 Sept Ice Volume m '+year, fontsize=25)314 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_glob_icevolu09_'+year+'.png')315 plt.close()316 317# Tous les plots Atlantique318# T & S319 fig = plt.figure(figsize=(22,7))320 plot_atl(fig,131,tem1[0],-2,30,'',case1,'jet')321 plot_atl(fig,132,tem2[0],-2,30,'',case2,'jet')322 plot_atl(fig,133,tem1[0]-tem2[0],-2,2,'',case1+'-'+case2,'bwr')323 fig.suptitle('NACHOS12.L75 Surf Temperature deg C '+year, fontsize=25)324 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_t0_'+year+'.png')325 plt.close()326 fig = plt.figure(figsize=(22,7))327 plot_atl(fig,131,sal1[0],30,40,'',case1,'jet')328 plot_atl(fig,132,sal2[0],30,40,'',case2,'jet')329 plot_atl(fig,133,sal1[0]-sal2[0],-1,1,'',case1+'-'+case2,'bwr')330 fig.suptitle('NACHOS12.L75 Surf Salinity PSU '+year, fontsize=25)331 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_s0_'+year+'.png')332 plt.close()333 fig = plt.figure(figsize=(22,7))334 plot_atl(fig,131,tem1[30],-2,30,'',case1,'jet')335 plot_atl(fig,132,tem2[30],-2,30,'',case2,'jet')336 plot_atl(fig,133,tem1[30]-tem2[30],-2,2,'',case1+'-'+case2,'bwr')337 fig.suptitle('NACHOS12.L75 200m Temperature deg C '+year, fontsize=25)338 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_t200_'+year+'.png')339 plt.close()340 fig = plt.figure(figsize=(22,7))341 plot_atl(fig,131,sal1[30],30,40,'',case1,'jet')342 plot_atl(fig,132,sal2[30],30,40,'',case2,'jet')343 plot_atl(fig,133,sal1[30]-sal2[30],-2,2,'',case1+'-'+case2,'bwr')344 fig.suptitle('NACHOS12.L75 200m Salinity PSU '+year, fontsize=25)345 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_s200_'+year+'.png')346 plt.close()347 fig = plt.figure(figsize=(22,7))348 plot_atl(fig,131,tem1[46],-2,30,'',case1,'jet')349 plot_atl(fig,132,tem2[46],-2,30,'',case2,'jet')350 plot_atl(fig,133,tem1[46]-tem2[46],-2,2,'',case1+'-'+case2,'bwr')351 fig.suptitle('NACHOS12.L75 1000m Temperature deg C '+year, fontsize=25)352 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_t1000_'+year+'.png')353 plt.close()354 fig = plt.figure(figsize=(22,7))355 plot_atl(fig,131,sal1[46],30,40,'',case1,'jet')356 plot_atl(fig,132,sal2[46],30,40,'',case2,'jet')357 plot_atl(fig,133,sal1[46]-sal2[46],-1,1,'',case1+'-'+case2,'bwr')358 fig.suptitle('NACHOS12.L75 1000m Salinity PSU '+year, fontsize=25)359 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_s1000_'+year+'.png')360 plt.close()361#PSI 362 fig = plt.figure(figsize=(22,7))363 plot_atl_cont(fig,131,1e-7*psi1,'',case1,-4,4,'Blues')364 plot_atl_cont(fig,132,1e-7*psi2,'',case2,-4,4,'Blues')365 plot_atl_cont(fig,133,1e-7*psi1-1e-7*psi2,'',case1+'-'+case2,-1,1,'bwr')366 fig.suptitle('NACHOS12.L75 Stream function '+year, fontsize=25)367 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_psi_'+year+'.png')368 plt.close()369#flx 370 fig = plt.figure(figsize=(22,7))371 plot_atl(fig,131,Heat1,-400,400,'',case1,'jet')372 plot_atl(fig,132,Heat2,-400,400,'',case2,'jet')373 plot_atl(fig,133,Heat1-Heat2,-100,100,'',case1+'-'+case2,'bwr')374 fig.suptitle('NACHOS12.L75 Net Heat Flux '+year, fontsize=25)375 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_heat_'+year+'.png')376 plt.close()377 fig = plt.figure(figsize=(22,7))378 plot_atl(fig,131,86400*WaterFlx1,-9,7,'',case1,'jet')379 plot_atl(fig,132,86400*WaterFlx2,-9,7,'',case2,'jet')380 plot_atl(fig,133,86400*WaterFlx1-86400*WaterFlx2,-2,2,'',case1+'-'+case2,'bwr')381 fig.suptitle('NACHOS12.L75 Water Flux '+year, fontsize=25)382 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_wflx_'+year+'.png')383 plt.close()384 fig = plt.figure(figsize=(22,7))385 plot_atl(fig,131,86400*WaterDmp1,-7,7,'',case1,'jet')386 plot_atl(fig,132,86400*WaterDmp2,-7,7,'',case2,'jet')387 plot_atl(fig,133,86400*WaterDmp1-86400*WaterDmp2,-2,2,'',case1+'-'+case2,'bwr')388 fig.suptitle('NACHOS12.L75 Water Damping '+year, fontsize=25)389 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_wdmp_'+year+'.png')390 plt.close()391 392#MXL393 fig = plt.figure(figsize=(22,7))394 plot_atl(fig,131,mxl103_rho010,0,1500,'',case1,'jet')395 plot_atl(fig,132,mxl203_rho010,0,1500,'',case2,'jet')396 plot_atl(fig,133,mxl103_rho010-mxl203_rho010,-100,100,'',case1+'-'+case2,'bwr')397 fig.suptitle('NACHOS12.L75 March MXL rho010 m '+year, fontsize=25)398 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_mxl03_rho010_'+year+'.png')399 plt.close()400 fig = plt.figure(figsize=(22,7))401 plot_atl(fig,131,mxl109_rho010,0,200,'',case1,'jet')402 plot_atl(fig,132,mxl209_rho010,0,200,'',case2,'jet')403 plot_atl(fig,133,mxl109_rho010-mxl209_rho010,-50,50,'',case1+'-'+case2,'bwr')404 fig.suptitle('NACHOS12.L75 Sept MXL rho010 m '+year, fontsize=25)405 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_atl_mxl09_rho010_'+year+'.png')406 plt.close()407 408#Tous les plots N Atlantique409 410 fig = plt.figure(figsize=(22,7))411 plot_natl(fig,131,iconc103,0,1,'',case1,'jet')412 plot_natl(fig,132,iconc203,0,1,'',case2,'jet')413 plot_natl(fig,133,iconc103-iconc203,-0.5,0.5,'',case1+'-'+case2,'bwr')414 fig.suptitle('NACHOS12.L75 March Ice concentration % '+year, fontsize=25)415 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_natl_iceconc03_'+year+'.png')416 plt.close()417 fig = plt.figure(figsize=(22,7))418 plot_natl(fig,131,ivolu103,0,4,'',case1,'jet')419 plot_natl(fig,132,ivolu203,0,4,'',case2,'jet')420 plot_natl(fig,133,ivolu103-ivolu203,-0.5,0.5,'',case1+'-'+case2,'bwr')421 fig.suptitle('NACHOS12.L75 March Ice Volume m '+year, fontsize=25)422 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_natl_icevolu03_'+year+'.png')423 plt.close()424 fig = plt.figure(figsize=(22,7))425 plot_natl(fig,131,iconc109,0,1,'',case1,'jet')426 plot_natl(fig,132,iconc209,0,1,'',case2,'jet')427 plot_natl(fig,133,iconc109-iconc209,-0.5,0.5,'',case1+'-'+case2,'bwr')428 fig.suptitle('NACHOS12.L75 Sept Ice concentration % '+case1+'-'+case2+' '+year, fontsize=25)429 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_natl_iceconc09_'+year+'.png')430 plt.close()431 fig = plt.figure(figsize=(22,7))432 plot_natl(fig,131,ivolu109,0,4,'',case1,'jet')433 plot_natl(fig,132,ivolu209,0,4,'',case2,'jet')434 plot_natl(fig,133,ivolu109-ivolu209,-0.5,0.5,'',case1+'-'+case2,'bwr')435 fig.suptitle('NACHOS12.L75 Sept Ice Volume m '+year, fontsize=25)436 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_natl_icevolu09_'+year+'.png')437 plt.close()438 439#MXL440 fig = plt.figure(figsize=(22,7))441 plot_natl(fig,131,mxl103_rho010,0,1500,'',case1,'jet')442 plot_natl(fig,132,mxl203_rho010,0,1500,'',case2,'jet')443 plot_natl(fig,133,mxl103_rho010-mxl203_rho010,-100,100,'',case1+'-'+case2,'bwr')444 fig.suptitle('NACHOS12.L75 March MXL rho010 m '+year, fontsize=25)445 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_natl_mxl03_rho010_'+year+'.png')446 plt.close()447 fig = plt.figure(figsize=(22,7))448 plot_natl(fig,131,mxl109_rho010,0,200,'',case1,'jet')449 plot_natl(fig,132,mxl209_rho010,0,200,'',case2,'jet')450 plot_natl(fig,133,mxl109_rho010-mxl209_rho010,-50,50,'',case1+'-'+case2,'bwr')451 fig.suptitle('NACHOS12.L75 Sept MXL rho010 m '+year, fontsize=25)452 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_natl_mxl09_rho010_'+year+'.png')453 plt.close()454 fig = plt.figure(figsize=(22,7))455 plot_natl(fig,131,mxl103_rho030,0,1500,'',case1,'jet')456 plot_natl(fig,132,mxl203_rho030,0,1500,'',case2,'jet')457 plot_natl(fig,133,mxl103_rho030-mxl203_rho030,-100,100,'',case1+'-'+case2,'bwr')458 fig.suptitle('NACHOS12.L75 March MXL rho030 m '+year, fontsize=25)459 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_natl_mxl03_rho030_'+year+'.png')460 plt.close()461 fig = plt.figure(figsize=(22,7))462 plot_natl(fig,131,mxl109_rho030,0,200,'',case1,'jet')463 plot_natl(fig,132,mxl209_rho030,0,200,'',case2,'jet')464 plot_natl(fig,133,mxl109_rho030-mxl209_rho030,-50,50,'',case1+'-'+case2,'bwr')465 fig.suptitle('NACHOS12.L75 Sept MXL rho030 m '+year, fontsize=25)466 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_natl_mxl09_rho030_'+year+'.png')467 plt.close()468 fig = plt.figure(figsize=(22,7))469 plot_natl(fig,131,mxl103_t02,0,1500,'',case1,'jet')470 plot_natl(fig,132,mxl203_t02,0,1500,'',case2,'jet')471 plot_natl(fig,133,mxl103_t02-mxl203_t02,-100,100,'',case1+'-'+case2,'bwr')472 fig.suptitle('NACHOS12.L75 March MXL t02 m '+year, fontsize=25)473 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_natl_mxl03_t02_'+year+'.png')474 plt.close()475 fig = plt.figure(figsize=(22,7))476 plot_natl(fig,131,mxl109_t02,0,200,'',case1,'jet')477 plot_natl(fig,132,mxl209_t02,0,200,'',case2,'jet')478 plot_natl(fig,133,mxl109_t02-mxl209_t02,-50,50,'',case1+'-'+case2,'bwr')479 fig.suptitle('NACHOS12.L75 Sept MXL t02 m '+year, fontsize=25)480 plt.savefig(dirplot+'NACHOS12.L75-'+case1+'-'+case2+'_natl_mxl09_t02_'+year+'.png')481 plt.close()482def script_parser():483 """Customized parser.484 """485 from optparse import OptionParser486 usage = "usage: %prog CASE1 CASE2 year"487 parser = OptionParser(usage=usage)488 return parser489def main():490 parser = script_parser()491 (options, args) = parser.parse_args()492 if len(args) < 3: # print the help message if number of args is not 2.493 parser.print_help()494 sys.exit()495 optdic = vars(options)496 if len(args) == 3:497 case1 = args[0]498 case2 = args[1]499 year = args[2]500 all_plots(case1,case2,year,**optdic)501if __name__ == '__main__':...
normalize_cases
Source:normalize_cases
1#!/usr/bin/env python2"""3Remove uninteresting diffs between cases by changing the4first to be more like the second.5This is for debugging purposes and meant to assist the user6when they want to run case_diff.7"""8from standard_script_setup import *9from CIME.utils import expect, run_cmd_no_fail10import argparse, sys, os, glob11###############################################################################12def parse_command_line(args, description):13###############################################################################14 parser = argparse.ArgumentParser(15 usage="""\n{0} case1 case216OR17{0} --help18\033[1mEXAMPLES:\033[0m19 > {0} case1 case220""".format(os.path.basename(args[0])),21description=description,22formatter_class=argparse.ArgumentDefaultsHelpFormatter23)24 CIME.utils.setup_standard_logging_options(parser)25 parser.add_argument("case1", help="First case. This one will be changed")26 parser.add_argument("case2", help="Second case. This one will not be changed")27 args = CIME.utils.parse_args_and_handle_standard_logging_options(args, parser)28 return args.case1, args.case229###############################################################################30def normalize_cases(case1, case2):31###############################################################################32 # gunzip all logs33 for case_dir in [case1, case2]:34 for log_dir in ["bld", "run"]:35 gzips = glob.glob(os.path.join(case_dir, log_dir, "*.gz"))36 if (gzips):37 run_cmd_no_fail("gunzip -f {}".format(" ".join(gzips)))38 # Change case1 to be as if it had same test-id as case239 test_id1 = run_cmd_no_fail("./xmlquery --value TEST_TESTID", from_dir=case1)40 test_id2 = run_cmd_no_fail("./xmlquery --value TEST_TESTID", from_dir=case2)41 run_cmd_no_fail("for item in $(find -type f); do sed -i 's/{}/{}/g' $item; done".format(test_id1, test_id2),42 from_dir=case1)43 # Change case1 to look as if it is was built/run at exact same time as case244 for log_dir in ["bld", "run"]:45 case1_lids = set()46 for logfile in glob.glob("{}/{}/*.bldlog.*".format(case1, log_dir)):47 case1_lids.add(logfile.split(".")[-1])48 case2_lids = set()49 for logfile in glob.glob("{}/{}/*.bldlog.*".format(case2, log_dir)):50 case2_lids.add(logfile.split(".")[-1])51 case1_lids = list(sorted(case1_lids))52 case2_lids = list(sorted(case2_lids))53 for case1_lid, case2_lid in zip(case1_lids, case2_lids):54 run_cmd_no_fail("for item in $(find -type f); do sed -i 's/{}/{}/g' $item; done".format(case1_lid, case2_lid),55 from_dir=case1)56 for case1_lid, case2_lid in zip(case1_lids, case2_lids):57 files_needing_rename = run_cmd_no_fail('find -depth -name "*.{}"'.format(case1_lid), from_dir=case1).splitlines()58 for file_needing_rename in files_needing_rename:59 expect(file_needing_rename.endswith(case1_lid), "broken")60 new_name = file_needing_rename.rstrip(case1_lid) + case2_lid61 os.rename(os.path.join(case1, file_needing_rename), os.path.join(case1, new_name))62 # Normalize CIMEROOT63 case1_root = run_cmd_no_fail("./xmlquery --value CIMEROOT", from_dir=case1)64 case2_root = run_cmd_no_fail("./xmlquery --value CIMEROOT", from_dir=case2)65 if (case1_root != case2_root):66 run_cmd_no_fail("for item in $(find -type f); do sed -i 's:{}:{}:g' $item; done".format(case1_root, case2_root),67 from_dir=case1)68###############################################################################69def _main_func(description):70###############################################################################71 case1, case2 = parse_command_line(sys.argv, description)72 normalize_cases(case1, case2)73###############################################################################74if (__name__ == "__main__"):...
test_cases.py
Source:test_cases.py
1### Tests cases input, partial order, relevance, etc.2import pytest3from aacbr.cases import Case, different_outcomes, inconsistent_pair #, mostConcise, attacks, newcaseattacks, 4def test_create_case():5 empty_case = Case('empty', set())6 print(empty_case)7 pass8def test_specificity():9 case1 = Case('1', {'a'})10 case2 = Case('2', {'a','b'})11 assert case2 >= case112 assert case2 > case113 assert not case1 >= case214 assert case1 >= case115 assert not case1 > case116 assert case2 >= case217def test_different_outcomes():18 case1 = Case('1', {'a'}, outcome=0)19 case2 = Case('2', {'a','b'}, outcome=1)20 assert different_outcomes(case1, case2)21 assert different_outcomes(case2, case1)22 assert not different_outcomes(case1, case1)23 assert not different_outcomes(case2, case2)24 25# def test_conciseness():26# case1 = Case('1', {'a'})27# case2 = Case('2', {'a','b'})28# case3 = Case('3', {'a','b','c'})29# cases = [case1, case2, case3]30# assert mostConcise(cases, case2, case1)31# assert not mostConcise(cases, case3, case1)32# assert not mostConcise(cases, case1, case2)33# def test_newcaseattack():34# newcase = Case('new', {'a'})35# case1 = Case('1', {'a'}, outcome=0)36# case2 = Case('2', {'a','b'}, outcome=1)37# default = Case('default', set(), outcome=0)38# cases = (default, case1, case2, newcase)39# assert newcaseattacks(newcase, case2)40# assert not newcaseattacks(newcase, case1)41# assert not newcaseattacks(newcase, default)42 43def test_inconsistent_pair():44 case1 = Case('1', {'a','b'}, outcome=0)45 case2 = Case('2', {'a','b'}, outcome=1)46 assert inconsistent_pair(case1, case2)47def test_order_notation():48 default = Case('default', set(), outcome=0)49 case1 = Case('1', {'a'}, outcome=1)50 case2 = Case('2', {'a','b'}, outcome=0)51 case2b = Case('2b', {'a','b'}, outcome=1)52 case3 = Case('3', {'c'})53 case4 = Case('4', {'a','b', 'c'}, outcome=1)54 cases = [default, case1, case2, case2b, case3, case4]55 assert all([default <= case for case in cases])56 assert all([case <= case for case in cases])57 assert not any([case < case for case in cases])58 assert case1 < case259 assert not case1 < case360 assert not case3 < case161 assert all([case >= default for case in cases])62 assert all([case >= case for case in cases])63 assert case4 > case1 and case4 > case364 assert case4 > case2 and case4 > case2b65 assert case2 >= case2b and case2b >= case266 assert not case2 == case2b67 assert case2 != case2b68 69def test_alternative_partial_order(): 70 class OrderedPair:71 """Pair (a,b) where (a,b) are natural numbers.72 Partial order is defined by (a,b) <= (c,d) iff a<=c and b<=d."""73 74 def __init__(self, x, y):75 self.x: int = x76 self.y: int = y77 78 def __eq__(self, other):79 return self.x == other.x and self.y == other.y80 def __le__(self, other):81 return self.x <= other.x and self.y <= other.y82 def __lt__(self, other):83 """Not necessary for Cases, but recommended."""84 return self <= other and self != other85 default = Case('default', OrderedPair(0,0), outcome=0)86 case1 = Case('1', OrderedPair(1,0), outcome=1)87 case2 = Case('2', OrderedPair(0,1), outcome=0)88 case2b = Case('2b', OrderedPair(0,1), outcome=1)89 case3 = Case('3', OrderedPair(2,1), outcome=0)90 cb = (case1, case2, case2b, case3)91 assert default <= default92 assert not default < default93 for case in cb:94 assert default < case95 assert not case < default96 assert not case2 < case197 assert not case2 > case198 assert case2 >= case2b99 assert case2b >= case2100 assert not case2 > case2b101 assert not case2b > case2102 assert case3 > case1103 assert case2 < case3104 105def test_load_cases():106 # TODO: implement107 pass108def test_list_of_numbers_partial_order():109 # TODO: implement110 pass111def test_arbitrary_partial_order():112 # TODO: implement...
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